Wall clock time and date at job start Tue Mar 31 2020 18:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.50696 * 109.47242 * 239.99386 * 2 1 3 5 5 H 1.08004 * 120.00665 * 240.00411 * 4 2 1 6 6 C 1.37884 * 119.99742 * 59.99791 * 4 2 1 7 7 N 1.31514 * 119.99985 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47364 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00721 * 8 6 4 11 11 H 1.48500 * 109.47233 * 240.00324 * 8 6 4 12 12 N 1.46500 * 109.47007 * 119.99601 * 2 1 3 13 13 C 1.34775 * 120.00463 * 274.99808 * 12 2 1 14 14 O 1.21285 * 119.99685 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00345 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47078 * 85.00196 * 15 13 12 17 17 O 1.42895 * 109.47158 * 324.99734 * 15 13 12 18 18 C 1.53006 * 109.46866 * 205.00018 * 15 13 12 19 19 N 1.46498 * 109.46726 * 184.99887 * 18 15 13 20 20 C 1.46732 * 125.62331 * 269.71710 * 19 18 15 21 21 C 1.50833 * 106.25208 * 179.85684 * 20 19 18 22 22 C 1.37574 * 133.24481 * 180.14647 * 21 20 19 23 23 C 1.38466 * 119.95769 * 180.28588 * 22 21 20 24 24 C 1.38382 * 120.19019 * 0.02562 * 23 22 21 25 25 C 1.37937 * 120.32090 * 359.97243 * 24 23 22 26 26 C 1.39620 * 119.82887 * 0.02562 * 25 24 23 27 27 C 1.34426 * 125.62451 * 90.02600 * 19 18 15 28 28 O 1.21551 * 124.85480 * 0.02562 * 27 19 18 29 29 H 1.09001 * 109.47289 * 60.00571 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00487 * 1 2 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 33 33 H 0.97002 * 120.00030 * 94.99975 * 12 2 1 34 34 H 1.09002 * 109.47153 * 299.99793 * 16 15 13 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.47261 * 59.99965 * 16 15 13 37 37 H 0.96698 * 114.00355 * 300.00487 * 17 15 13 38 38 H 1.09000 * 109.47314 * 304.99779 * 18 15 13 39 39 H 1.09007 * 109.47135 * 65.00150 * 18 15 13 40 40 H 1.08997 * 110.10157 * 299.19945 * 20 19 18 41 41 H 1.09000 * 110.09957 * 60.81177 * 20 19 18 42 42 H 1.08006 * 120.01818 * 0.30771 * 22 21 20 43 43 H 1.08011 * 119.90531 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.83695 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.08535 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1472 -0.1862 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6499 -0.7284 3.5875 16 6 4.1799 -0.7278 3.5872 17 8 2.1740 -2.0758 3.5877 18 6 2.1399 -0.0072 4.8369 19 7 2.7245 -0.6246 6.0299 20 6 2.1418 -1.7366 6.7895 21 6 3.0989 -2.0233 7.9194 22 6 3.0983 -2.9397 8.9456 23 6 4.1405 -2.9578 9.8569 24 6 5.1836 -2.0561 9.7393 25 6 5.1940 -1.1332 8.7142 26 6 4.1467 -1.1086 7.7912 27 6 3.8804 -0.2621 6.6126 28 8 4.6023 0.6355 6.2245 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7094 1.1615 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 4.5432 -1.2416 2.6971 35 1 4.5436 -1.2411 4.4774 36 1 4.5429 0.3000 3.5871 37 1 1.2101 -2.1525 3.5879 38 1 2.4279 1.0431 4.7932 39 1 1.0535 -0.0845 4.8830 40 1 1.1672 -1.4502 7.1847 41 1 2.0445 -2.6154 6.1520 42 1 2.2855 -3.6447 9.0399 43 1 4.1390 -3.6774 10.6625 44 1 5.9935 -2.0751 10.4536 45 1 6.0103 -0.4315 8.6257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277249154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:06 Heat of formation + Delta-G solvation = -77.729155 kcal Electronic energy + Delta-G solvation = -28661.584172 eV Core-core repulsion = 24644.497238 eV Total energy + Delta-G solvation = -4017.086934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45173 -39.70503 -38.30439 -36.90850 -35.92872 -34.91904 -32.66735 -32.31879 -31.42877 -30.56599 -28.82509 -27.21206 -26.89742 -25.30221 -24.11821 -22.59870 -21.97696 -20.74052 -19.98489 -19.47911 -18.22398 -17.17381 -16.93007 -16.68240 -16.24884 -15.78514 -15.35956 -15.13146 -14.91970 -14.74367 -14.51638 -14.38974 -13.71011 -13.56706 -13.46113 -13.42083 -13.27649 -12.73147 -12.46764 -12.26025 -12.22183 -12.03193 -11.83924 -11.69047 -11.62059 -11.39508 -11.11948 -11.01621 -10.92885 -10.77539 -10.33425 -10.26904 -9.99856 -9.44451 -9.28122 -9.09431 -9.07255 -8.63268 -8.55167 -7.98383 -6.14937 -4.24098 0.48495 0.93190 2.53648 2.62757 3.15611 3.22761 3.30778 3.33905 3.51718 3.79064 3.92341 4.15227 4.19262 4.35183 4.52122 4.61572 4.69706 4.83059 4.92818 5.01816 5.11512 5.16357 5.17471 5.29796 5.38546 5.51768 5.57609 5.67474 5.85564 5.87685 5.92043 5.95324 6.02349 6.29934 6.36949 6.45354 6.75729 6.84638 6.88670 7.08707 7.34825 7.39148 7.55342 7.66883 7.87055 8.01201 8.10693 8.59143 8.73127 9.02094 9.43341 10.91084 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.002431 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.718141 B =11512.832123 C =11559.066515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.694 5.694 13 C 0.480 3.520 14 O -0.550 6.550 15 C 0.101 3.899 16 C -0.128 4.128 17 O -0.548 6.548 18 C 0.126 3.874 19 N -0.603 5.603 20 C 0.139 3.861 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.090 4.090 24 C -0.130 4.130 25 C -0.047 4.047 26 C -0.155 4.155 27 C 0.556 3.444 28 O -0.518 6.518 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.395 0.605 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.378 0.622 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -9.996 24.604 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.342 5.342 13 C 0.262 3.738 14 O -0.429 6.429 15 C 0.056 3.944 16 C -0.185 4.185 17 O -0.353 6.353 18 C 0.004 3.996 19 N -0.336 5.336 20 C 0.016 3.984 21 C -0.081 4.081 22 C -0.123 4.123 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.066 4.066 26 C -0.158 4.158 27 C 0.345 3.655 28 O -0.395 6.395 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.225 0.775 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.031 -8.618 24.130 25.801 hybrid contribution -0.266 -0.862 -0.929 1.295 sum 2.766 -9.480 23.201 25.215 Atomic orbital electron populations 1.22073 0.98324 0.99113 1.00946 1.18805 0.91091 0.94050 0.80034 0.93349 1.21247 1.32415 1.13238 0.90242 0.91980 1.24895 0.94792 0.94953 0.99103 1.69907 1.35939 1.22430 1.23824 0.86381 0.78619 0.79552 0.82490 1.19701 1.20858 1.20847 1.46530 1.63532 1.14007 1.10086 1.20851 0.79458 0.87836 0.85606 1.90692 1.51128 1.15813 1.85271 1.21957 0.97338 0.82466 0.92625 1.21664 0.90241 1.03698 1.02918 1.86569 1.26850 1.24981 1.96924 1.21872 0.98024 0.98729 0.80998 1.47744 1.23031 1.34954 1.27828 1.20549 0.95757 0.91074 0.91043 1.20522 0.96027 0.95683 0.95849 1.20306 0.99562 0.98468 0.93933 1.21321 0.93314 0.98027 0.98208 1.21134 0.99276 0.95881 0.98487 1.20896 0.96510 0.97204 0.92030 1.20482 0.97555 0.99520 0.98234 1.18256 0.81122 0.83194 0.82978 1.90809 1.50055 1.31010 1.67628 0.89048 0.95407 0.96734 0.92600 0.77185 0.91304 0.91759 0.90026 0.77489 0.87115 0.89197 0.88761 0.87794 0.85105 0.85055 0.85068 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.26 37.16 0.34 -3.19 16 2 C 0.26 6.60 2.56 -69.09 -0.18 6.43 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.69 -14.28 4.98 -54.94 -0.27 -14.55 16 13 C 0.48 9.31 6.66 -10.99 -0.07 9.23 16 14 O -0.55 -12.71 15.65 5.55 0.09 -12.62 16 15 C 0.10 1.50 1.09 -91.77 -0.10 1.40 16 16 C -0.13 -2.01 7.69 37.16 0.29 -1.73 16 17 O -0.55 -6.73 11.83 -35.23 -0.42 -7.15 16 18 C 0.13 1.68 4.89 -4.04 -0.02 1.66 16 19 N -0.60 -7.27 2.55 -176.13 -0.45 -7.72 16 20 C 0.14 1.17 7.38 -5.00 -0.04 1.13 16 21 C -0.08 -0.71 6.38 -104.26 -0.66 -1.38 16 22 C -0.10 -0.70 10.03 -39.74 -0.40 -1.10 16 23 C -0.09 -0.55 10.05 -39.44 -0.40 -0.94 16 24 C -0.13 -0.90 10.02 -39.64 -0.40 -1.30 16 25 C -0.05 -0.45 10.10 -39.18 -0.40 -0.85 16 26 C -0.15 -1.76 6.26 -105.05 -0.66 -2.42 16 27 C 0.56 7.88 6.26 -12.63 -0.08 7.80 16 28 O -0.52 -9.16 16.78 5.32 0.09 -9.08 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 7.36 7.98 -40.82 -0.33 7.03 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.98 6.27 -51.93 -0.33 0.66 16 36 H 0.08 1.41 8.00 -51.93 -0.42 0.99 16 37 H 0.38 3.44 9.04 45.56 0.41 3.85 16 38 H 0.11 1.77 7.55 -51.93 -0.39 1.37 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.78 7.73 -51.93 -0.40 0.38 16 42 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -33.59 375.84 -8.36 -41.95 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.50 Total: 9.99 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -3.16 Total: 2.00 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.10 Total: -46.46 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.24 Total: -28.85 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.59 -8.36 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277249154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.779 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds