Wall clock time and date at job start Tue Mar 31 2020 18:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.50696 * 109.47242 * 239.99386 * 2 1 3 5 5 H 1.08004 * 120.00665 * 240.00411 * 4 2 1 6 6 C 1.37884 * 119.99742 * 59.99791 * 4 2 1 7 7 N 1.31514 * 119.99985 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47364 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00721 * 8 6 4 11 11 H 1.48500 * 109.47233 * 240.00324 * 8 6 4 12 12 N 1.46500 * 109.47007 * 119.99601 * 2 1 3 13 13 C 1.34775 * 120.00463 * 274.99808 * 12 2 1 14 14 O 1.21285 * 119.99685 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00345 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47078 * 85.00196 * 15 13 12 17 17 O 1.42895 * 109.47158 * 324.99734 * 15 13 12 18 18 C 1.53006 * 109.46866 * 205.00018 * 15 13 12 19 19 N 1.46498 * 109.46726 * 184.99887 * 18 15 13 20 20 C 1.46732 * 125.62331 * 269.71710 * 19 18 15 21 21 C 1.50833 * 106.25208 * 179.85684 * 20 19 18 22 22 C 1.37574 * 133.24481 * 180.14647 * 21 20 19 23 23 C 1.38466 * 119.95769 * 180.28588 * 22 21 20 24 24 C 1.38382 * 120.19019 * 0.02562 * 23 22 21 25 25 C 1.37937 * 120.32090 * 359.97243 * 24 23 22 26 26 C 1.39620 * 119.82887 * 0.02562 * 25 24 23 27 27 C 1.34426 * 125.62451 * 90.02600 * 19 18 15 28 28 O 1.21551 * 124.85480 * 0.02562 * 27 19 18 29 29 H 1.09001 * 109.47289 * 60.00571 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00487 * 1 2 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 33 33 H 0.97002 * 120.00030 * 94.99975 * 12 2 1 34 34 H 1.09002 * 109.47153 * 299.99793 * 16 15 13 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.47261 * 59.99965 * 16 15 13 37 37 H 0.96698 * 114.00355 * 300.00487 * 17 15 13 38 38 H 1.09000 * 109.47314 * 304.99779 * 18 15 13 39 39 H 1.09007 * 109.47135 * 65.00150 * 18 15 13 40 40 H 1.08997 * 110.10157 * 299.19945 * 20 19 18 41 41 H 1.09000 * 110.09957 * 60.81177 * 20 19 18 42 42 H 1.08006 * 120.01818 * 0.30771 * 22 21 20 43 43 H 1.08011 * 119.90531 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.83695 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.08535 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1472 -0.1862 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6499 -0.7284 3.5875 16 6 4.1799 -0.7278 3.5872 17 8 2.1740 -2.0758 3.5877 18 6 2.1399 -0.0072 4.8369 19 7 2.7245 -0.6246 6.0299 20 6 2.1418 -1.7366 6.7895 21 6 3.0989 -2.0233 7.9194 22 6 3.0983 -2.9397 8.9456 23 6 4.1405 -2.9578 9.8569 24 6 5.1836 -2.0561 9.7393 25 6 5.1940 -1.1332 8.7142 26 6 4.1467 -1.1086 7.7912 27 6 3.8804 -0.2621 6.6126 28 8 4.6023 0.6355 6.2245 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7094 1.1615 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 4.5432 -1.2416 2.6971 35 1 4.5436 -1.2411 4.4774 36 1 4.5429 0.3000 3.5871 37 1 1.2101 -2.1525 3.5879 38 1 2.4279 1.0431 4.7932 39 1 1.0535 -0.0845 4.8830 40 1 1.1672 -1.4502 7.1847 41 1 2.0445 -2.6154 6.1520 42 1 2.2855 -3.6447 9.0399 43 1 4.1390 -3.6774 10.6625 44 1 5.9935 -2.0751 10.4536 45 1 6.0103 -0.4315 8.6257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277249154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:05 Heat of formation + Delta-G solvation = -102.562603 kcal Electronic energy + Delta-G solvation = -28662.661031 eV Core-core repulsion = 24644.497238 eV Total energy + Delta-G solvation = -4018.163793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33980 -41.11662 -39.19409 -38.20675 -36.90160 -36.78863 -34.32123 -33.59546 -32.03802 -31.68710 -30.62041 -28.24307 -27.65840 -27.36448 -25.34999 -23.71626 -22.60296 -22.28316 -21.12522 -20.91042 -19.70234 -18.28795 -17.96057 -17.71224 -17.48083 -17.11677 -16.78013 -16.40278 -16.30260 -15.97779 -15.52531 -15.13552 -15.08968 -14.87387 -14.52153 -14.44745 -14.42405 -14.01697 -13.73164 -13.59315 -13.40662 -13.32235 -13.07952 -13.03139 -12.90573 -12.84888 -12.70979 -12.68353 -12.30182 -12.15744 -12.07875 -11.97171 -11.12310 -11.02399 -10.70186 -10.59249 -10.09520 -9.87506 -9.82455 -9.58130 -8.20186 -6.37549 -0.19734 0.37239 1.42198 1.43681 1.53129 1.55073 1.60509 1.76596 2.32332 2.52428 2.84560 2.99678 3.10201 3.12263 3.43463 3.48901 3.69560 3.79959 3.95130 4.20372 4.27937 4.38328 4.43455 4.50687 4.55214 4.57292 4.59988 4.68949 4.75190 4.81827 4.90872 4.97038 5.02317 5.06790 5.14728 5.40357 5.40521 5.48024 5.54769 5.56633 5.65150 5.85784 5.89069 5.95706 6.07883 6.49683 6.69565 6.88198 7.00427 7.27403 7.43398 8.86036 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.002431 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.718141 B =11512.832123 C =11559.066515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.285 1.285 12 N -0.689 5.689 13 C 0.480 3.520 14 O -0.589 6.589 15 C 0.126 3.874 16 C -0.122 4.122 17 O -0.537 6.537 18 C 0.130 3.870 19 N -0.600 5.600 20 C 0.136 3.864 21 C -0.079 4.079 22 C -0.101 4.101 23 C -0.079 4.079 24 C -0.129 4.129 25 C -0.066 4.066 26 C -0.192 4.192 27 C 0.541 3.459 28 O -0.574 6.574 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.407 0.593 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.397 0.603 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.165 0.835 43 H 0.168 0.832 44 H 0.156 0.844 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -13.946 26.539 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.164 3.836 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.186 1.186 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.337 5.337 13 C 0.264 3.736 14 O -0.471 6.471 15 C 0.080 3.920 16 C -0.180 4.180 17 O -0.345 6.345 18 C 0.007 3.993 19 N -0.331 5.331 20 C 0.015 3.985 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.097 4.097 24 C -0.147 4.147 25 C -0.085 4.085 26 C -0.196 4.196 27 C 0.332 3.668 28 O -0.455 6.455 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.248 0.752 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.182 0.818 43 H 0.185 0.815 44 H 0.174 0.826 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.202 -12.636 26.103 29.084 hybrid contribution -0.012 0.342 -1.419 1.460 sum 2.190 -12.294 24.683 27.662 Atomic orbital electron populations 1.21867 0.97548 0.99784 0.99818 1.18418 0.91643 0.91731 0.81768 0.98620 1.21549 1.32587 1.13501 0.90868 0.91174 1.25783 0.94871 0.95589 1.02272 1.70049 1.36952 1.23804 1.24593 0.85306 0.78167 0.78473 0.78450 1.18561 1.20107 1.21095 1.46268 1.63710 1.14443 1.09326 1.21650 0.78124 0.87391 0.86397 1.90676 1.52555 1.17875 1.85990 1.21511 0.96420 0.83330 0.90700 1.21561 0.91069 1.02241 1.03115 1.86555 1.28801 1.22511 1.96640 1.21690 0.99563 0.96895 0.81105 1.47789 1.22558 1.35591 1.27153 1.20854 0.96541 0.90208 0.90936 1.20705 0.95059 0.95643 0.96616 1.20736 1.00525 0.97934 0.92675 1.21821 0.92042 0.97483 0.98377 1.21455 1.00447 0.95029 0.97775 1.21045 0.96218 0.98268 0.93016 1.20409 0.99875 1.00876 0.98411 1.18920 0.81096 0.82902 0.83854 1.90761 1.51881 1.33504 1.69378 0.91582 0.93621 0.96404 0.92497 0.75691 0.91283 0.91175 0.92468 0.75235 0.90455 0.86269 0.85895 0.86072 0.81751 0.81456 0.82635 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 9.26 71.98 0.67 -5.78 16 2 C 0.27 13.82 2.56 44.24 0.11 13.94 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.55 -29.10 8.73 25.60 0.22 -28.88 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 N -0.69 -28.42 4.98 -446.11 -2.22 -30.64 16 13 C 0.48 18.90 6.66 87.66 0.58 19.49 16 14 O -0.59 -28.45 15.65 -3.05 -0.05 -28.50 16 15 C 0.13 3.70 1.09 -11.54 -0.01 3.69 16 16 C -0.12 -3.96 7.69 71.98 0.55 -3.41 16 17 O -0.54 -11.79 11.83 -148.98 -1.76 -13.56 16 18 C 0.13 3.49 4.89 86.38 0.42 3.91 16 19 N -0.60 -14.16 2.55 -829.63 -2.12 -16.27 16 20 C 0.14 1.91 7.38 85.63 0.63 2.54 16 21 C -0.08 -1.21 6.38 -19.63 -0.13 -1.34 16 22 C -0.10 -0.91 10.03 22.17 0.22 -0.69 16 23 C -0.08 -0.62 10.05 22.36 0.22 -0.39 16 24 C -0.13 -1.48 10.02 22.23 0.22 -1.26 16 25 C -0.07 -1.26 10.10 22.53 0.23 -1.04 16 26 C -0.19 -4.36 6.26 -20.14 -0.13 -4.49 16 27 C 0.54 16.02 6.26 86.75 0.54 16.56 16 28 O -0.57 -22.11 16.78 -3.88 -0.07 -22.18 16 29 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 30 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.41 14.72 7.98 -92.71 -0.74 13.98 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.20 6.27 -2.39 -0.01 2.18 16 36 H 0.06 2.12 8.00 -2.38 -0.02 2.11 16 37 H 0.40 5.74 9.04 -74.06 -0.67 5.07 16 38 H 0.08 2.64 7.55 -2.39 -0.02 2.62 16 39 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.12 1.33 7.73 -2.39 -0.02 1.31 16 42 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 43 H 0.17 0.14 8.06 -2.90 -0.02 0.12 16 44 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 45 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -78.35 375.84 0.50 -77.85 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.37 Total: 27.11 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 4.82 Total: 14.11 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.09 Total: -99.14 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -1.88 Total: -64.23 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -78.35 0.50 -77.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277249154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.711 kcal (2) G-P(sol) polarization free energy of solvation -78.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds