Wall clock time and date at job start Tue Mar 31 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46978 * 2 1 4 4 C 1.50697 * 109.47359 * 240.00011 * 2 1 3 5 5 H 1.08005 * 119.99645 * 240.00097 * 4 2 1 6 6 C 1.37875 * 120.00077 * 60.00014 * 4 2 1 7 7 N 1.31514 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99897 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47232 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47305 * 119.99957 * 8 6 4 11 11 H 1.48506 * 109.46885 * 239.99737 * 8 6 4 12 12 N 1.46504 * 109.46908 * 119.99381 * 2 1 3 13 13 C 1.34773 * 120.00481 * 275.00101 * 12 2 1 14 14 O 1.21288 * 119.99582 * 0.02562 * 13 12 2 15 15 C 1.50691 * 119.99921 * 179.97438 * 13 12 2 16 16 C 1.53007 * 109.47314 * 274.99940 * 15 13 12 17 17 O 1.42900 * 109.47144 * 35.00548 * 15 13 12 18 18 C 1.53009 * 109.47091 * 155.00241 * 15 13 12 19 19 N 1.46493 * 109.47095 * 179.97438 * 18 15 13 20 20 C 1.46741 * 125.62205 * 90.00425 * 19 18 15 21 21 C 1.50823 * 106.30502 * 179.97438 * 20 19 18 22 22 C 1.37573 * 133.23981 * 179.97438 * 21 20 19 23 23 C 1.38476 * 119.95480 * 180.02562 * 22 21 20 24 24 C 1.38379 * 120.19188 * 359.97438 * 23 22 21 25 25 C 1.37944 * 120.31890 * 0.02803 * 24 23 22 26 26 C 1.39618 * 119.82786 * 359.97319 * 25 24 23 27 27 C 1.34546 * 125.70089 * 269.92955 * 19 18 15 28 28 O 1.21552 * 124.83354 * 0.02620 * 27 19 18 29 29 H 1.09004 * 109.47547 * 300.00246 * 1 2 3 30 30 H 1.09005 * 109.47152 * 60.00301 * 1 2 3 31 31 H 1.08994 * 109.47148 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00160 * 180.02562 * 7 6 4 33 33 H 0.97004 * 119.99300 * 95.00777 * 12 2 1 34 34 H 1.08993 * 109.46879 * 300.00043 * 16 15 13 35 35 H 1.08995 * 109.46447 * 60.00301 * 16 15 13 36 36 H 1.09002 * 109.46773 * 179.97438 * 16 15 13 37 37 H 0.96696 * 114.00306 * 59.99603 * 17 15 13 38 38 H 1.08999 * 109.46787 * 59.99748 * 18 15 13 39 39 H 1.09000 * 109.46857 * 300.00104 * 18 15 13 40 40 H 1.09002 * 110.10027 * 60.75858 * 20 19 18 41 41 H 1.08996 * 110.09496 * 299.21489 * 20 19 18 42 42 H 1.07995 * 120.02534 * 0.02856 * 22 21 20 43 43 H 1.08003 * 119.90031 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.84106 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.08714 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2870 -3.6036 10 1 1.1663 -1.5867 -4.8160 11 1 3.1468 -0.1873 -4.8164 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6487 -0.7287 3.5878 16 6 1.4789 -1.4223 4.2888 17 8 3.6237 -1.7030 3.2110 18 6 3.2840 0.2869 4.5397 19 7 3.7712 -0.4037 5.7362 20 6 5.1124 -0.9739 5.9074 21 6 5.1439 -1.5744 7.2906 22 6 6.1117 -2.2390 8.0077 23 6 5.8386 -2.6842 9.2902 24 6 4.5944 -2.4621 9.8537 25 6 3.6169 -1.7968 9.1433 26 6 3.8846 -1.3449 7.8497 27 6 3.0646 -0.6194 6.8607 28 8 1.9147 -0.2669 7.0364 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7082 1.1608 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 0.7353 -0.6790 4.5762 35 1 1.0264 -2.1457 3.6107 36 1 1.8420 -1.9366 5.1787 37 1 4.3953 -1.3335 2.7603 38 1 2.5403 1.0301 4.8270 39 1 4.1174 0.7811 4.0402 40 1 5.8660 -0.1909 5.8220 41 1 5.2892 -1.7466 5.1593 42 1 7.0838 -2.4134 7.5708 43 1 6.5989 -3.2062 9.8522 44 1 4.3877 -2.8114 10.8545 45 1 2.6473 -1.6251 9.5869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277249158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:10 Heat of formation + Delta-G solvation = -78.454689 kcal Electronic energy + Delta-G solvation = -28659.307596 eV Core-core repulsion = 24642.189201 eV Total energy + Delta-G solvation = -4017.118395 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43422 -39.70255 -38.30111 -36.90939 -35.91235 -34.91667 -32.66352 -32.32563 -31.42645 -30.58448 -28.82823 -27.20318 -26.88309 -25.29135 -24.10721 -22.60090 -21.97322 -20.75562 -19.98688 -19.46971 -18.21572 -17.17217 -16.91054 -16.68589 -16.23876 -15.79306 -15.45902 -15.05925 -14.89256 -14.73218 -14.51015 -14.38692 -13.76202 -13.57141 -13.50172 -13.44340 -13.15387 -12.73255 -12.43792 -12.27962 -12.22992 -12.07004 -11.90752 -11.69674 -11.53997 -11.39342 -11.12684 -11.01093 -10.93737 -10.76068 -10.32697 -10.26984 -10.00352 -9.44461 -9.27769 -9.10035 -9.06552 -8.62523 -8.56130 -7.98385 -6.15679 -4.25240 0.48636 0.93455 2.53330 2.62839 3.15602 3.21482 3.29359 3.32026 3.51824 3.79352 3.92229 4.16053 4.19464 4.33859 4.52494 4.61825 4.69370 4.84118 4.93313 5.02407 5.11749 5.16255 5.17392 5.30473 5.39005 5.51785 5.57849 5.66714 5.85591 5.86834 5.91584 5.94376 6.02455 6.27391 6.37116 6.45543 6.78912 6.84488 6.93978 7.11142 7.35546 7.40106 7.55660 7.66786 7.87032 8.00736 8.10945 8.58860 8.72046 9.01661 9.42269 10.90242 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.002507 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.655042 B =11166.190822 C =11762.676565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.694 5.694 13 C 0.480 3.520 14 O -0.550 6.550 15 C 0.101 3.899 16 C -0.127 4.127 17 O -0.547 6.547 18 C 0.126 3.874 19 N -0.603 5.603 20 C 0.138 3.862 21 C -0.079 4.079 22 C -0.104 4.104 23 C -0.090 4.090 24 C -0.130 4.130 25 C -0.047 4.047 26 C -0.155 4.155 27 C 0.556 3.444 28 O -0.520 6.520 29 H 0.015 0.985 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.395 0.605 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.379 0.621 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 -7.507 21.690 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.342 5.342 13 C 0.262 3.738 14 O -0.430 6.430 15 C 0.056 3.944 16 C -0.184 4.184 17 O -0.353 6.353 18 C 0.004 3.996 19 N -0.335 5.335 20 C 0.015 3.985 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.066 4.066 26 C -0.158 4.158 27 C 0.345 3.655 28 O -0.396 6.396 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.228 0.772 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.226 0.774 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.685 -6.685 21.792 25.174 hybrid contribution 0.830 -0.574 -1.229 1.591 sum 11.515 -7.259 20.562 24.660 Atomic orbital electron populations 1.22080 0.98349 0.99224 1.00984 1.18805 0.91173 0.93943 0.79988 0.93354 1.21238 1.32481 1.13212 0.90225 0.91967 1.24898 0.94803 0.94954 0.99108 1.69911 1.35808 1.22486 1.23829 0.86384 0.78626 0.79511 0.82514 1.19708 1.20853 1.20884 1.46539 1.63498 1.13996 1.10122 1.20862 0.80065 0.87572 0.85276 1.90693 1.51603 1.15813 1.84857 1.21963 0.90508 0.89330 0.92602 1.21652 0.95469 1.01206 1.00120 1.86563 1.33296 1.35596 1.79840 1.21854 1.00661 0.93606 0.83435 1.47759 1.13658 1.57332 1.14741 1.20556 0.85139 0.98670 0.94113 1.20516 0.94480 0.97280 0.95731 1.20311 0.98816 0.98760 0.94381 1.21322 0.96947 0.97879 0.94711 1.21131 0.93405 0.99846 1.00415 1.20891 0.99621 0.94318 0.91820 1.20472 0.96057 1.03286 0.95975 1.18289 0.85848 0.79191 0.82179 1.90802 1.16235 1.52638 1.79972 0.96601 0.89065 0.95408 0.92590 0.77180 0.90175 0.91446 0.91610 0.77383 0.87281 0.89082 0.88765 0.87745 0.85092 0.85056 0.85076 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.60 2.56 -69.08 -0.18 6.43 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 N -0.69 -14.23 4.98 -54.93 -0.27 -14.50 16 13 C 0.48 9.25 6.66 -10.99 -0.07 9.18 16 14 O -0.55 -12.65 15.76 5.55 0.09 -12.56 16 15 C 0.10 1.50 1.08 -91.77 -0.10 1.40 16 16 C -0.13 -1.96 7.85 37.16 0.29 -1.67 16 17 O -0.55 -6.83 11.38 -35.23 -0.40 -7.23 16 18 C 0.13 1.70 4.76 -4.04 -0.02 1.68 16 19 N -0.60 -7.26 2.59 -176.10 -0.46 -7.72 16 20 C 0.14 1.18 7.22 -5.00 -0.04 1.14 16 21 C -0.08 -0.71 6.38 -104.27 -0.66 -1.37 16 22 C -0.10 -0.71 10.03 -39.74 -0.40 -1.10 16 23 C -0.09 -0.55 10.05 -39.44 -0.40 -0.95 16 24 C -0.13 -0.90 10.02 -39.64 -0.40 -1.30 16 25 C -0.05 -0.45 10.10 -39.17 -0.40 -0.85 16 26 C -0.15 -1.76 6.26 -105.05 -0.66 -2.42 16 27 C 0.56 7.84 6.41 -12.57 -0.08 7.76 16 28 O -0.52 -9.06 16.78 5.32 0.09 -8.98 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 7.34 7.98 -40.82 -0.33 7.02 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.01 6.21 -51.93 -0.32 0.68 16 37 H 0.38 3.59 9.04 45.56 0.41 4.00 16 38 H 0.11 1.71 7.74 -51.93 -0.40 1.31 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.80 7.51 -51.93 -0.39 0.41 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -33.30 375.59 -8.35 -41.65 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.51 Total: 10.34 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.15 Total: 1.98 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.10 Total: -46.28 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.22 Total: -28.77 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.30 -8.35 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277249158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.808 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds