Wall clock time and date at job start Tue Mar 31 2020 18:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46978 * 2 1 4 4 C 1.50697 * 109.47359 * 240.00011 * 2 1 3 5 5 H 1.08005 * 119.99645 * 240.00097 * 4 2 1 6 6 C 1.37875 * 120.00077 * 60.00014 * 4 2 1 7 7 N 1.31514 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99897 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47232 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47305 * 119.99957 * 8 6 4 11 11 H 1.48506 * 109.46885 * 239.99737 * 8 6 4 12 12 N 1.46504 * 109.46908 * 119.99381 * 2 1 3 13 13 C 1.34773 * 120.00481 * 275.00101 * 12 2 1 14 14 O 1.21288 * 119.99582 * 0.02562 * 13 12 2 15 15 C 1.50691 * 119.99921 * 179.97438 * 13 12 2 16 16 C 1.53007 * 109.47314 * 274.99940 * 15 13 12 17 17 O 1.42900 * 109.47144 * 35.00548 * 15 13 12 18 18 C 1.53009 * 109.47091 * 155.00241 * 15 13 12 19 19 N 1.46493 * 109.47095 * 179.97438 * 18 15 13 20 20 C 1.46741 * 125.62205 * 90.00425 * 19 18 15 21 21 C 1.50823 * 106.30502 * 179.97438 * 20 19 18 22 22 C 1.37573 * 133.23981 * 179.97438 * 21 20 19 23 23 C 1.38476 * 119.95480 * 180.02562 * 22 21 20 24 24 C 1.38379 * 120.19188 * 359.97438 * 23 22 21 25 25 C 1.37944 * 120.31890 * 0.02803 * 24 23 22 26 26 C 1.39618 * 119.82786 * 359.97319 * 25 24 23 27 27 C 1.34546 * 125.70089 * 269.92955 * 19 18 15 28 28 O 1.21552 * 124.83354 * 0.02620 * 27 19 18 29 29 H 1.09004 * 109.47547 * 300.00246 * 1 2 3 30 30 H 1.09005 * 109.47152 * 60.00301 * 1 2 3 31 31 H 1.08994 * 109.47148 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00160 * 180.02562 * 7 6 4 33 33 H 0.97004 * 119.99300 * 95.00777 * 12 2 1 34 34 H 1.08993 * 109.46879 * 300.00043 * 16 15 13 35 35 H 1.08995 * 109.46447 * 60.00301 * 16 15 13 36 36 H 1.09002 * 109.46773 * 179.97438 * 16 15 13 37 37 H 0.96696 * 114.00306 * 59.99603 * 17 15 13 38 38 H 1.08999 * 109.46787 * 59.99748 * 18 15 13 39 39 H 1.09000 * 109.46857 * 300.00104 * 18 15 13 40 40 H 1.09002 * 110.10027 * 60.75858 * 20 19 18 41 41 H 1.08996 * 110.09496 * 299.21489 * 20 19 18 42 42 H 1.07995 * 120.02534 * 0.02856 * 22 21 20 43 43 H 1.08003 * 119.90031 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.84106 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.08714 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2870 -3.6036 10 1 1.1663 -1.5867 -4.8160 11 1 3.1468 -0.1873 -4.8164 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6487 -0.7287 3.5878 16 6 1.4789 -1.4223 4.2888 17 8 3.6237 -1.7030 3.2110 18 6 3.2840 0.2869 4.5397 19 7 3.7712 -0.4037 5.7362 20 6 5.1124 -0.9739 5.9074 21 6 5.1439 -1.5744 7.2906 22 6 6.1117 -2.2390 8.0077 23 6 5.8386 -2.6842 9.2902 24 6 4.5944 -2.4621 9.8537 25 6 3.6169 -1.7968 9.1433 26 6 3.8846 -1.3449 7.8497 27 6 3.0646 -0.6194 6.8607 28 8 1.9147 -0.2669 7.0364 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7082 1.1608 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 0.7353 -0.6790 4.5762 35 1 1.0264 -2.1457 3.6107 36 1 1.8420 -1.9366 5.1787 37 1 4.3953 -1.3335 2.7603 38 1 2.5403 1.0301 4.8270 39 1 4.1174 0.7811 4.0402 40 1 5.8660 -0.1909 5.8220 41 1 5.2892 -1.7466 5.1593 42 1 7.0838 -2.4134 7.5708 43 1 6.5989 -3.2062 9.8522 44 1 4.3877 -2.8114 10.8545 45 1 2.6473 -1.6251 9.5869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277249158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:09 Heat of formation + Delta-G solvation = -102.787948 kcal Electronic energy + Delta-G solvation = -28660.362766 eV Core-core repulsion = 24642.189201 eV Total energy + Delta-G solvation = -4018.173564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.32096 -41.11413 -39.18893 -38.20772 -36.88479 -36.78535 -34.31015 -33.59853 -32.03673 -31.68693 -30.65559 -28.22057 -27.65197 -27.36446 -25.33415 -23.72666 -22.60156 -22.29816 -21.11218 -20.91870 -19.68987 -18.26263 -17.95702 -17.69178 -17.49184 -17.17147 -16.77423 -16.38532 -16.25432 -15.94993 -15.53228 -15.26981 -15.01161 -14.80532 -14.54743 -14.45494 -14.39426 -14.01710 -13.80768 -13.58799 -13.38973 -13.29751 -13.10517 -13.02887 -12.89199 -12.81578 -12.71797 -12.71134 -12.30819 -12.12476 -12.09332 -11.96711 -11.12078 -11.02066 -10.69858 -10.58615 -10.09392 -9.88118 -9.82295 -9.57412 -8.18558 -6.36156 -0.19634 0.37305 1.44462 1.45457 1.53036 1.57972 1.59915 1.76822 2.32670 2.53566 2.84594 3.00148 3.11735 3.12311 3.43503 3.48887 3.69439 3.80482 3.95244 4.20470 4.28912 4.38395 4.43076 4.50677 4.55357 4.58121 4.59438 4.68676 4.72514 4.81869 4.87986 4.97619 5.02332 5.05887 5.14643 5.38507 5.40538 5.48050 5.54788 5.57453 5.63720 5.83850 5.88860 5.95658 6.06493 6.48369 6.71058 6.88220 7.00222 7.28375 7.44017 8.87906 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.002507 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.655042 B =11166.190822 C =11762.676565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.004 0.996 4 C -0.543 4.543 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.258 1.258 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.689 5.689 13 C 0.480 3.520 14 O -0.589 6.589 15 C 0.125 3.875 16 C -0.122 4.122 17 O -0.538 6.538 18 C 0.131 3.869 19 N -0.600 5.600 20 C 0.135 3.865 21 C -0.079 4.079 22 C -0.101 4.101 23 C -0.079 4.079 24 C -0.129 4.129 25 C -0.066 4.066 26 C -0.192 4.192 27 C 0.542 3.458 28 O -0.573 6.573 29 H 0.010 0.990 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.396 0.604 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.156 0.844 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.647 -10.258 22.350 29.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.581 4.581 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.182 1.182 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.338 5.338 13 C 0.265 3.735 14 O -0.471 6.471 15 C 0.080 3.920 16 C -0.179 4.179 17 O -0.346 6.346 18 C 0.008 3.992 19 N -0.331 5.331 20 C 0.014 3.986 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.097 4.097 24 C -0.147 4.147 25 C -0.085 4.085 26 C -0.195 4.195 27 C 0.333 3.667 28 O -0.454 6.454 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.182 0.818 43 H 0.185 0.815 44 H 0.174 0.826 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.320 -9.478 22.467 28.278 hybrid contribution -0.224 0.274 -1.340 1.386 sum 14.096 -9.204 21.126 27.014 Atomic orbital electron populations 1.21931 0.98629 0.99378 0.99602 1.18408 0.90927 0.92158 0.81895 0.97817 1.21535 1.32536 1.13493 0.90559 0.90702 1.25814 0.94881 0.95579 1.02390 1.70057 1.36975 1.24009 1.24583 0.85274 0.78039 0.78559 0.78320 1.18202 1.20732 1.20851 1.46272 1.63670 1.14426 1.09383 1.21643 0.78820 0.87102 0.85949 1.90677 1.52981 1.17895 1.85520 1.21544 0.90934 0.89391 0.90180 1.21560 0.95419 1.00658 1.00276 1.86551 1.33473 1.34584 1.79956 1.21661 1.00826 0.92803 0.83893 1.47795 1.15017 1.56701 1.13540 1.20848 0.83431 0.99816 0.94544 1.20689 0.93958 0.97612 0.95758 1.20733 0.99451 0.97347 0.94402 1.21818 0.97028 0.96357 0.94529 1.21457 0.93197 0.98779 1.01262 1.21046 1.00329 0.95362 0.91731 1.20403 0.96959 1.05482 0.96667 1.18935 0.85579 0.78902 0.83266 1.90754 1.18529 1.55006 1.81096 0.97107 0.91283 0.94298 0.92548 0.75687 0.92205 0.91132 0.91312 0.75318 0.90295 0.86731 0.86086 0.86091 0.81848 0.81485 0.82595 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.05 9.26 71.98 0.67 -6.38 16 2 C 0.27 13.84 2.56 44.24 0.11 13.95 16 3 H 0.00 0.24 7.58 -2.38 -0.02 0.22 16 4 C -0.54 -28.22 8.73 25.60 0.22 -27.99 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 8 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 9 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 N -0.69 -28.24 4.98 -446.10 -2.22 -30.47 16 13 C 0.48 18.78 6.66 87.65 0.58 19.37 16 14 O -0.59 -28.19 15.76 -3.06 -0.05 -28.24 16 15 C 0.13 3.67 1.08 -11.54 -0.01 3.66 16 16 C -0.12 -3.84 7.85 71.98 0.57 -3.28 16 17 O -0.54 -12.14 11.38 -148.98 -1.70 -13.84 16 18 C 0.13 3.54 4.76 86.38 0.41 3.95 16 19 N -0.60 -14.21 2.59 -829.46 -2.15 -16.36 16 20 C 0.13 1.95 7.22 85.63 0.62 2.57 16 21 C -0.08 -1.23 6.38 -19.63 -0.13 -1.35 16 22 C -0.10 -0.95 10.03 22.17 0.22 -0.72 16 23 C -0.08 -0.63 10.05 22.36 0.22 -0.40 16 24 C -0.13 -1.47 10.02 22.23 0.22 -1.24 16 25 C -0.07 -1.23 10.10 22.53 0.23 -1.01 16 26 C -0.19 -4.33 6.26 -20.14 -0.13 -4.45 16 27 C 0.54 15.89 6.41 86.73 0.56 16.44 16 28 O -0.57 -21.61 16.78 -3.88 -0.07 -21.67 16 29 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.41 14.63 7.98 -92.71 -0.74 13.89 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.15 6.21 -2.39 -0.01 2.13 16 37 H 0.40 6.21 9.04 -74.06 -0.67 5.54 16 38 H 0.08 2.65 7.74 -2.39 -0.02 2.63 16 39 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.12 1.39 7.51 -2.39 -0.02 1.37 16 42 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 43 H 0.17 0.16 8.06 -2.91 -0.02 0.14 16 44 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -76.70 375.59 0.53 -76.17 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.38 Total: 28.75 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 4.82 Total: 14.26 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -4.13 Total: -98.85 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -1.81 Total: -63.75 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -76.70 0.53 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277249158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.618 kcal (2) G-P(sol) polarization free energy of solvation -76.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds