Wall clock time and date at job start Tue Mar 31 2020 17:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99781 * 2 1 4 4 O 1.20827 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00207 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.65455 * 56.80893 * 5 3 2 7 7 C 1.54590 * 110.98924 * 293.65094 * 5 3 2 8 8 N 1.48120 * 103.42266 * 204.36986 * 7 5 3 9 9 C 1.34778 * 127.03211 * 219.28872 * 8 7 5 10 10 O 1.21583 * 119.99807 * 179.69083 * 9 8 7 11 11 N 1.34777 * 120.00187 * 359.68191 * 9 8 7 12 12 C 1.39238 * 119.99771 * 175.49453 * 11 9 8 13 13 C 1.39485 * 119.83370 * 215.84743 * 12 11 9 14 14 C 1.36369 * 120.16841 * 179.97438 * 13 12 11 15 15 C 1.40871 * 119.83372 * 0.02562 * 14 13 12 16 16 C 1.41153 * 120.16649 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00190 * 335.29101 * 16 15 14 18 18 C 1.39898 * 119.99603 * 155.00797 * 16 15 14 19 19 N 1.30875 * 120.00251 * 345.08051 * 18 16 15 20 20 Si 1.86802 * 119.99754 * 165.07967 * 18 16 15 21 21 H 1.48495 * 109.47077 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.46818 * 210.00162 * 20 18 16 23 23 H 1.48502 * 109.47209 * 329.99961 * 20 18 16 24 24 C 1.40868 * 119.66632 * 0.25821 * 15 14 13 25 25 C 1.36372 * 119.83141 * 359.43309 * 24 15 14 26 26 C 1.47481 * 105.92959 * 39.02870 * 8 7 5 27 27 C 1.54001 * 107.08419 * 334.77564 * 26 8 7 28 28 H 1.08994 * 110.32594 * 120.30282 * 27 26 8 29 29 C 1.53002 * 110.32822 * 242.41503 * 27 26 8 30 30 H 1.08997 * 109.46682 * 60.00580 * 1 2 3 31 31 H 1.08998 * 109.46376 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47390 * 300.00114 * 1 2 3 33 33 H 1.09011 * 110.61582 * 85.86015 * 7 5 3 34 34 H 1.08997 * 110.54880 * 322.85645 * 7 5 3 35 35 H 0.96998 * 120.00360 * 355.49879 * 11 9 8 36 36 H 1.08006 * 119.91517 * 0.02562 * 13 12 11 37 37 H 1.08008 * 120.08763 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00077 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.08173 * 179.72741 * 24 15 14 40 40 H 1.08000 * 119.92169 * 180.29789 * 25 24 15 41 41 H 1.08997 * 109.91249 * 94.14178 * 26 8 7 42 42 H 1.09001 * 109.90792 * 215.41519 * 26 8 7 43 43 H 1.08998 * 109.46857 * 58.54667 * 29 27 26 44 44 H 1.08995 * 109.47596 * 178.54658 * 29 27 26 45 45 H 1.08999 * 109.46996 * 298.55239 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9799 0.7374 -0.8527 7 6 4.1491 0.7261 1.3230 8 7 5.4640 1.4003 1.4254 9 6 6.6208 0.8616 1.8591 10 8 7.6329 1.5349 1.8849 11 7 6.6557 -0.4233 2.2644 12 6 7.8677 -1.0073 2.6233 13 6 8.1061 -2.3493 2.3267 14 6 9.2908 -2.9280 2.6747 15 6 10.2750 -2.1672 3.3358 16 6 11.5035 -2.7593 3.6997 17 1 11.5649 -3.8270 3.8501 18 6 12.6431 -1.9638 3.8597 19 7 12.6561 -0.7389 3.3989 20 14 14.1463 -2.6499 4.7310 21 1 15.0413 -3.2971 3.7385 22 1 14.8734 -1.5457 5.4073 23 1 13.7191 -3.6522 5.7400 24 6 10.0245 -0.8142 3.6373 25 6 8.8374 -0.2475 3.2774 26 6 5.2497 2.7797 0.9495 27 6 4.0373 2.7477 0.0004 28 1 3.2473 3.3995 0.3733 29 6 4.4544 3.1722 -1.4091 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 4.2747 -0.3554 1.2675 34 1 3.5111 0.9975 2.1641 35 1 5.8366 -0.9412 2.3059 36 1 7.3507 -2.9312 1.8195 37 1 9.4742 -3.9671 2.4440 38 1 13.4461 -0.1871 3.5102 39 1 10.7725 -0.2258 4.1478 40 1 8.6458 0.7911 3.5035 41 1 5.0424 3.4359 1.7947 42 1 6.1321 3.1285 0.4130 43 1 5.2355 2.5049 -1.7733 44 1 3.5926 3.1198 -2.0743 45 1 4.8323 4.1942 -1.3838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280541158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:21 Heat of formation + Delta-G solvation = -82.248082 kcal Electronic energy + Delta-G solvation = -27955.814854 eV Core-core repulsion = 23938.531965 eV Total energy + Delta-G solvation = -4017.282889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.21780 -40.02150 -38.36421 -37.11501 -36.60798 -34.42980 -33.27182 -32.49399 -30.84808 -29.44193 -28.95272 -27.93196 -26.63646 -24.92183 -24.21362 -22.06699 -21.28968 -20.96174 -19.99156 -19.38525 -18.30303 -17.91616 -17.26888 -17.11152 -16.80600 -16.21643 -15.59330 -15.29308 -14.81756 -14.55400 -14.09824 -13.92529 -13.86455 -13.61201 -13.49656 -13.19202 -12.98907 -12.68137 -12.58349 -12.33914 -12.28321 -12.01460 -11.76522 -11.45617 -11.35105 -11.31730 -11.21143 -11.08792 -11.01183 -10.92844 -10.84645 -10.46028 -9.99136 -9.86221 -9.50883 -9.18688 -8.70167 -8.62195 -7.46940 -6.95018 -6.67567 -4.25382 1.75829 2.22589 2.67628 2.86558 3.09793 3.10758 3.14716 3.19680 3.64854 3.90748 3.96798 4.12533 4.34776 4.46943 4.67463 4.70166 4.72623 4.79353 4.84240 4.92858 5.11428 5.15144 5.26319 5.42032 5.49222 5.60604 5.73963 5.76849 5.77779 5.94591 5.98648 6.16947 6.20816 6.44149 6.85634 6.94274 7.09755 7.15111 7.32054 7.33974 7.38531 7.67185 7.85411 8.06019 8.10974 8.30961 8.46052 8.68972 8.93498 8.95837 9.13102 10.24654 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.002284 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.387239 B =12258.261642 C =13043.059806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.475 3.525 4 O -0.501 6.501 5 C -0.096 4.096 6 H 0.123 0.877 7 C 0.117 3.883 8 N -0.643 5.643 9 C 0.717 3.283 10 O -0.566 6.566 11 N -0.664 5.664 12 C 0.010 3.990 13 C -0.105 4.105 14 C -0.215 4.215 15 C 0.104 3.896 16 C -0.459 4.459 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.791 5.791 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.156 4.156 25 C -0.086 4.086 26 C 0.129 3.871 27 C -0.094 4.094 28 H 0.104 0.896 29 C -0.144 4.144 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.389 0.611 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.280 0.720 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.728 3.508 -6.552 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.388 6.388 5 C -0.117 4.117 6 H 0.141 0.859 7 C -0.007 4.007 8 N -0.384 5.384 9 C 0.420 3.580 10 O -0.442 6.442 11 N -0.310 5.310 12 C -0.083 4.083 13 C -0.126 4.126 14 C -0.236 4.236 15 C 0.101 3.899 16 C -0.488 4.488 17 H 0.095 0.905 18 C -0.145 4.145 19 N -0.417 5.417 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.176 4.176 25 C -0.106 4.106 26 C 0.005 3.995 27 C -0.113 4.113 28 H 0.122 0.878 29 C -0.201 4.201 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.223 0.777 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.919 4.478 -6.522 21.432 hybrid contribution -0.056 -0.499 0.170 0.530 sum -19.975 3.979 -6.352 21.335 Atomic orbital electron populations 1.23309 0.76042 1.03940 1.02621 1.86533 1.23641 1.33146 1.83850 1.23376 0.91455 0.81435 0.72078 1.90666 1.66870 1.36324 1.44950 1.22224 0.87312 1.00046 1.02071 0.85926 1.22167 0.85274 0.98481 0.94787 1.47858 1.07157 1.13192 1.70158 1.15458 0.81551 0.82534 0.78438 1.90954 1.31524 1.60863 1.60843 1.42087 1.09619 1.10512 1.68756 1.16997 0.87479 0.93006 1.10784 1.20019 0.97329 0.93394 1.01852 1.20532 0.95673 0.99408 1.07947 1.17676 0.92017 0.91917 0.88246 1.19526 0.92958 0.95237 1.41095 0.90498 1.25937 1.00555 0.94532 0.93482 1.69852 1.29870 1.08249 1.33697 0.86311 0.80626 0.79537 0.80210 1.19564 1.20136 1.18521 1.21067 0.95979 0.96418 1.04093 1.20577 0.94052 0.98464 0.97515 1.21945 0.97717 0.83004 0.96812 1.22174 0.98067 0.93706 0.97389 0.87787 1.21858 1.01500 1.02167 0.94587 0.91843 0.87881 0.91739 0.89155 0.90667 0.77695 0.89323 0.88681 0.90853 0.85989 0.87527 0.91511 0.89714 0.91973 0.92314 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.98 10.57 -39.25 -0.41 -3.40 16 3 C 0.47 4.44 7.27 36.01 0.26 4.70 16 4 O -0.50 -5.76 15.19 -18.75 -0.28 -6.05 16 5 C -0.10 -0.84 3.09 -90.09 -0.28 -1.12 16 6 H 0.12 0.98 7.86 -51.93 -0.41 0.57 16 7 C 0.12 1.13 6.34 -2.32 -0.01 1.11 16 8 N -0.64 -8.72 3.29 -175.70 -0.58 -9.30 16 9 C 0.72 13.35 8.37 -86.92 -0.73 12.63 16 10 O -0.57 -13.20 14.13 5.29 0.07 -13.12 16 11 N -0.66 -12.01 5.27 -14.10 -0.07 -12.09 16 12 C 0.01 0.22 6.30 -83.57 -0.53 -0.31 16 13 C -0.11 -2.32 9.90 -39.79 -0.39 -2.72 16 14 C -0.22 -5.24 9.74 -39.26 -0.38 -5.63 16 15 C 0.10 2.81 5.58 -106.80 -0.60 2.22 16 16 C -0.46 -12.24 9.05 -37.86 -0.34 -12.59 16 17 H 0.08 1.95 7.89 -52.49 -0.41 1.54 16 18 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 19 N -0.79 -21.11 10.83 55.55 0.60 -20.51 16 20 Si 0.91 18.89 29.59 -169.99 -5.03 13.86 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.16 -4.22 8.63 -39.26 -0.34 -4.56 16 25 C -0.09 -2.18 8.61 -39.79 -0.34 -2.53 16 26 C 0.13 1.49 6.62 -2.98 -0.02 1.47 16 27 C -0.09 -0.85 2.99 -89.25 -0.27 -1.12 16 28 H 0.10 0.97 6.86 -51.93 -0.36 0.61 16 29 C -0.14 -1.17 8.89 37.16 0.33 -0.84 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.09 0.76 6.89 -51.92 -0.36 0.41 16 34 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.39 5.52 7.20 -40.82 -0.29 5.23 16 36 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 38 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 39 H 0.12 3.44 6.09 -52.49 -0.32 3.12 16 40 H 0.11 2.75 6.25 -52.49 -0.33 2.43 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.08 7.59 -51.93 -0.39 0.69 16 43 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -32.98 373.36 -8.97 -41.95 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.23 Total: 9.28 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.66 Total: -6.24 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.05 Total: -41.90 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.62 Total: -22.57 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.98 -8.97 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280541158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.301 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds