Wall clock time and date at job start Tue Mar 31 2020 17:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99781 * 2 1 4 4 O 1.20827 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00207 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.65455 * 56.80893 * 5 3 2 7 7 C 1.54590 * 110.98924 * 293.65094 * 5 3 2 8 8 N 1.48120 * 103.42266 * 204.36986 * 7 5 3 9 9 C 1.34778 * 127.03211 * 219.28872 * 8 7 5 10 10 O 1.21583 * 119.99807 * 179.69083 * 9 8 7 11 11 N 1.34777 * 120.00187 * 359.68191 * 9 8 7 12 12 C 1.39238 * 119.99771 * 175.49453 * 11 9 8 13 13 C 1.39485 * 119.83370 * 215.84743 * 12 11 9 14 14 C 1.36369 * 120.16841 * 179.97438 * 13 12 11 15 15 C 1.40871 * 119.83372 * 0.02562 * 14 13 12 16 16 C 1.41153 * 120.16649 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00190 * 335.29101 * 16 15 14 18 18 C 1.39898 * 119.99603 * 155.00797 * 16 15 14 19 19 N 1.30875 * 120.00251 * 345.08051 * 18 16 15 20 20 Si 1.86802 * 119.99754 * 165.07967 * 18 16 15 21 21 H 1.48495 * 109.47077 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.46818 * 210.00162 * 20 18 16 23 23 H 1.48502 * 109.47209 * 329.99961 * 20 18 16 24 24 C 1.40868 * 119.66632 * 0.25821 * 15 14 13 25 25 C 1.36372 * 119.83141 * 359.43309 * 24 15 14 26 26 C 1.47481 * 105.92959 * 39.02870 * 8 7 5 27 27 C 1.54001 * 107.08419 * 334.77564 * 26 8 7 28 28 H 1.08994 * 110.32594 * 120.30282 * 27 26 8 29 29 C 1.53002 * 110.32822 * 242.41503 * 27 26 8 30 30 H 1.08997 * 109.46682 * 60.00580 * 1 2 3 31 31 H 1.08998 * 109.46376 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47390 * 300.00114 * 1 2 3 33 33 H 1.09011 * 110.61582 * 85.86015 * 7 5 3 34 34 H 1.08997 * 110.54880 * 322.85645 * 7 5 3 35 35 H 0.96998 * 120.00360 * 355.49879 * 11 9 8 36 36 H 1.08006 * 119.91517 * 0.02562 * 13 12 11 37 37 H 1.08008 * 120.08763 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00077 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.08173 * 179.72741 * 24 15 14 40 40 H 1.08000 * 119.92169 * 180.29789 * 25 24 15 41 41 H 1.08997 * 109.91249 * 94.14178 * 26 8 7 42 42 H 1.09001 * 109.90792 * 215.41519 * 26 8 7 43 43 H 1.08998 * 109.46857 * 58.54667 * 29 27 26 44 44 H 1.08995 * 109.47596 * 178.54658 * 29 27 26 45 45 H 1.08999 * 109.46996 * 298.55239 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9799 0.7374 -0.8527 7 6 4.1491 0.7261 1.3230 8 7 5.4640 1.4003 1.4254 9 6 6.6208 0.8616 1.8591 10 8 7.6329 1.5349 1.8849 11 7 6.6557 -0.4233 2.2644 12 6 7.8677 -1.0073 2.6233 13 6 8.1061 -2.3493 2.3267 14 6 9.2908 -2.9280 2.6747 15 6 10.2750 -2.1672 3.3358 16 6 11.5035 -2.7593 3.6997 17 1 11.5649 -3.8270 3.8501 18 6 12.6431 -1.9638 3.8597 19 7 12.6561 -0.7389 3.3989 20 14 14.1463 -2.6499 4.7310 21 1 15.0413 -3.2971 3.7385 22 1 14.8734 -1.5457 5.4073 23 1 13.7191 -3.6522 5.7400 24 6 10.0245 -0.8142 3.6373 25 6 8.8374 -0.2475 3.2774 26 6 5.2497 2.7797 0.9495 27 6 4.0373 2.7477 0.0004 28 1 3.2473 3.3995 0.3733 29 6 4.4544 3.1722 -1.4091 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 4.2747 -0.3554 1.2675 34 1 3.5111 0.9975 2.1641 35 1 5.8366 -0.9412 2.3059 36 1 7.3507 -2.9312 1.8195 37 1 9.4742 -3.9671 2.4440 38 1 13.4461 -0.1871 3.5102 39 1 10.7725 -0.2258 4.1478 40 1 8.6458 0.7911 3.5035 41 1 5.0424 3.4359 1.7947 42 1 6.1321 3.1285 0.4130 43 1 5.2355 2.5049 -1.7733 44 1 3.5926 3.1198 -2.0743 45 1 4.8323 4.1942 -1.3838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280541158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:20 Heat of formation + Delta-G solvation = -101.590385 kcal Electronic energy + Delta-G solvation = -27956.653599 eV Core-core repulsion = 23938.531965 eV Total energy + Delta-G solvation = -4018.121634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.06597 -41.28124 -39.66192 -38.59837 -37.44761 -36.18630 -34.85206 -33.75319 -31.64654 -31.36186 -30.75602 -28.48081 -27.80533 -26.38131 -25.31697 -23.26358 -22.94545 -22.42944 -20.95256 -20.72532 -19.44328 -19.18502 -18.85216 -18.00929 -17.73370 -17.42513 -17.06094 -16.75864 -16.15646 -15.70837 -15.48253 -15.13744 -14.92040 -14.77481 -14.56159 -14.29121 -14.15719 -13.92221 -13.87387 -13.68505 -13.42111 -13.32542 -13.10942 -12.89964 -12.76645 -12.65309 -12.29152 -12.11142 -12.07292 -11.83282 -11.79958 -11.74726 -11.72073 -11.58253 -11.26474 -10.98949 -10.48302 -9.85093 -9.41001 -8.80385 -8.56449 -6.24016 0.88724 1.02844 1.18771 1.39207 1.41976 1.50580 1.55759 1.76276 2.14334 2.23357 2.80103 2.99229 3.21183 3.40097 3.69564 3.78574 3.97569 4.07197 4.15810 4.33140 4.36890 4.38419 4.47198 4.51634 4.53134 4.64690 4.70648 4.76174 4.78020 4.94227 4.96217 5.02274 5.13098 5.18442 5.26354 5.30970 5.34585 5.38166 5.47238 5.70783 5.83374 6.08800 6.14831 6.20091 6.38654 6.64105 6.72911 6.96420 6.99518 7.05850 7.62434 8.37686 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.002284 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.387239 B =12258.261642 C =13043.059806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.482 3.518 4 O -0.525 6.525 5 C -0.090 4.090 6 H 0.135 0.865 7 C 0.114 3.886 8 N -0.637 5.637 9 C 0.715 3.285 10 O -0.621 6.621 11 N -0.653 5.653 12 C 0.025 3.975 13 C -0.098 4.098 14 C -0.221 4.221 15 C 0.071 3.929 16 C -0.492 4.492 17 H 0.082 0.918 18 C 0.027 3.973 19 N -0.832 5.832 20 Si 0.986 3.014 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.181 4.181 25 C -0.101 4.101 26 C 0.124 3.876 27 C -0.083 4.083 28 H 0.106 0.894 29 C -0.141 4.141 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.413 0.587 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.285 0.715 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.970 1.936 -7.357 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.325 3.675 4 O -0.413 6.413 5 C -0.110 4.110 6 H 0.153 0.847 7 C -0.009 4.009 8 N -0.375 5.375 9 C 0.417 3.583 10 O -0.501 6.501 11 N -0.302 5.302 12 C -0.069 4.069 13 C -0.118 4.118 14 C -0.241 4.241 15 C 0.068 3.932 16 C -0.522 4.522 17 H 0.100 0.900 18 C -0.187 4.187 19 N -0.459 5.459 20 Si 0.806 3.194 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.201 4.201 25 C -0.121 4.121 26 C 0.001 3.999 27 C -0.102 4.102 28 H 0.124 0.876 29 C -0.199 4.199 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.154 0.846 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.267 2.888 -7.350 23.626 hybrid contribution 0.386 0.055 0.340 0.517 sum -21.882 2.943 -7.009 23.165 Atomic orbital electron populations 1.23580 0.74547 1.05775 1.02674 1.86520 1.25102 1.32380 1.83392 1.23311 0.91386 0.81409 0.71410 1.90667 1.67355 1.37149 1.46172 1.22162 0.87248 0.99599 1.01977 0.84700 1.22443 0.83144 0.99381 0.95905 1.47727 1.07124 1.14209 1.68428 1.15580 0.82179 0.82209 0.78291 1.90928 1.34144 1.62091 1.62894 1.41814 1.09119 1.10681 1.68542 1.17029 0.88137 0.93172 1.08518 1.20375 0.97498 0.93188 1.00717 1.20827 0.95941 1.00127 1.07228 1.18022 0.93376 0.92182 0.89576 1.19820 0.93726 0.95761 1.42873 0.89957 1.26875 1.03640 0.94606 0.93555 1.69947 1.31085 1.09771 1.35062 0.85153 0.76385 0.78847 0.78988 1.18588 1.19594 1.17821 1.20950 0.96437 0.96998 1.05705 1.20585 0.94707 0.98194 0.98628 1.22118 0.98236 0.82051 0.97466 1.22076 0.96675 0.94313 0.97182 0.87576 1.21840 1.01662 1.02337 0.94018 0.91794 0.85227 0.91757 0.87249 0.89188 0.74962 0.84632 0.86980 0.90423 0.88443 0.88909 0.91012 0.91314 0.92494 0.91425 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.36 -4.91 10.57 -51.40 -0.54 -5.45 16 3 C 0.48 7.71 7.27 71.24 0.52 8.23 16 4 O -0.52 -10.92 15.19 21.96 0.33 -10.59 16 5 C -0.09 -1.32 3.09 -10.45 -0.03 -1.35 16 6 H 0.14 1.71 7.86 -2.39 -0.02 1.69 16 7 C 0.11 1.85 6.34 86.61 0.55 2.39 16 8 N -0.64 -16.27 3.29 -828.05 -2.73 -19.00 16 9 C 0.71 26.12 8.37 179.05 1.50 27.62 16 10 O -0.62 -29.68 14.13 -3.98 -0.06 -29.73 16 11 N -0.65 -22.42 5.27 -316.78 -1.67 -24.09 16 12 C 0.03 1.12 6.30 38.57 0.24 1.36 16 13 C -0.10 -4.07 9.90 22.13 0.22 -3.85 16 14 C -0.22 -10.60 9.74 22.48 0.22 -10.38 16 15 C 0.07 3.94 5.58 -21.28 -0.12 3.82 16 16 C -0.49 -26.98 9.05 23.39 0.21 -26.77 16 17 H 0.08 4.24 7.89 -2.91 -0.02 4.22 16 18 C 0.03 1.41 5.19 85.24 0.44 1.85 16 19 N -0.83 -46.40 10.83 21.82 0.24 -46.17 16 20 Si 0.99 39.37 29.59 68.60 2.03 41.40 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 24 C -0.18 -10.31 8.63 22.48 0.19 -10.12 16 25 C -0.10 -5.30 8.61 22.13 0.19 -5.11 16 26 C 0.12 2.76 6.62 86.53 0.57 3.34 16 27 C -0.08 -1.36 2.99 -9.90 -0.03 -1.39 16 28 H 0.11 1.77 6.86 -2.39 -0.02 1.75 16 29 C -0.14 -2.07 8.89 71.98 0.64 -1.43 16 30 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 31 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.58 8.13 -2.39 -0.02 0.57 16 33 H 0.11 1.39 6.89 -2.38 -0.02 1.37 16 34 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 35 H 0.41 10.25 7.20 -92.71 -0.67 9.59 16 36 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.29 14.50 8.30 -92.71 -0.77 13.73 16 39 H 0.10 5.92 6.09 -2.91 -0.02 5.90 16 40 H 0.09 5.06 6.25 -2.91 -0.02 5.05 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.77 7.59 -2.39 -0.02 1.75 16 43 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.27 373.36 4.47 -70.79 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.35 Total: 33.16 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 6.51 Total: -10.34 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -4.16 Total: -89.25 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.27 Total: -45.77 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -75.27 4.47 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280541158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.797 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds