Wall clock time and date at job start Tue Mar 31 2020 17:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.67275 * 2 1 4 4 C 1.53068 * 109.67458 * 239.49883 * 2 1 3 5 5 C 1.50173 * 109.89342 * 191.36627 * 4 2 1 6 6 O 1.21273 * 118.24818 * 197.60302 * 5 4 2 7 7 N 1.33360 * 123.50543 * 17.58362 * 5 4 2 8 8 C 1.45750 * 124.10799 * 357.77209 * 7 5 4 9 9 H 1.08994 * 109.30337 * 258.97419 * 8 7 5 10 10 C 1.50700 * 109.30020 * 139.38907 * 8 7 5 11 11 O 1.21283 * 119.99990 * 339.99859 * 10 8 7 12 12 N 1.34773 * 120.00321 * 160.00087 * 10 8 7 13 13 C 1.46503 * 120.00314 * 179.97438 * 12 10 8 14 14 C 1.50694 * 109.47113 * 179.97438 * 13 12 10 15 15 C 1.38310 * 119.92958 * 90.00165 * 14 13 12 16 16 C 1.38101 * 120.07029 * 179.97438 * 15 14 13 17 17 C 1.38879 * 119.93021 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.07039 * 179.97438 * 17 16 15 19 19 C 1.34833 * 116.99784 * 5.52986 * 18 17 16 20 20 H 1.07998 * 119.99914 * 354.94279 * 19 18 17 21 21 C 1.38648 * 119.99755 * 174.94557 * 19 18 17 22 22 N 1.31562 * 119.99776 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00398 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47175 * 270.00424 * 23 21 19 25 25 H 1.48505 * 109.47461 * 150.00310 * 23 21 19 26 26 H 1.48496 * 109.47191 * 30.00111 * 23 21 19 27 27 C 1.38883 * 119.86438 * 0.24989 * 17 16 15 28 28 C 1.38109 * 119.92576 * 359.49389 * 27 17 16 29 29 C 1.52925 * 110.48607 * 19.08163 * 8 7 5 30 30 H 1.08999 * 109.47110 * 180.50211 * 1 2 3 31 31 H 1.09002 * 109.46798 * 300.50326 * 1 2 3 32 32 H 1.08998 * 109.46919 * 60.49880 * 1 2 3 33 33 H 1.08996 * 109.40137 * 71.23616 * 4 2 1 34 34 H 1.08998 * 109.32734 * 311.45387 * 4 2 1 35 35 H 0.97001 * 117.94641 * 177.75212 * 7 5 4 36 36 H 0.97007 * 119.99954 * 0.02562 * 12 10 8 37 37 H 1.08996 * 109.46707 * 60.00415 * 13 12 10 38 38 H 1.08996 * 109.47127 * 300.00506 * 13 12 10 39 39 H 1.07997 * 119.96371 * 359.95631 * 15 14 13 40 40 H 1.07999 * 120.03644 * 180.02562 * 16 15 14 41 41 H 0.97008 * 120.00054 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.03752 * 179.72846 * 27 17 16 43 43 H 1.07996 * 119.96255 * 180.23588 * 28 27 17 44 44 H 1.08994 * 109.60384 * 68.99959 * 29 8 7 45 45 H 1.09003 * 109.60204 * 189.48865 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0454 -0.7316 -1.2419 5 6 3.5210 -0.9790 -1.1136 6 8 4.1475 -1.2466 -2.1169 7 7 4.1794 -0.9198 0.0446 8 6 3.5643 -0.5642 1.3172 9 1 3.7969 0.4744 1.5521 10 6 4.1129 -1.4550 2.4018 11 8 4.6376 -2.5096 2.1128 12 7 4.0206 -1.0799 3.6930 13 6 4.5534 -1.9462 4.7474 14 6 4.3259 -1.3013 6.0902 15 6 3.1602 -1.5561 6.7896 16 6 2.9489 -0.9670 8.0206 17 6 3.9082 -0.1175 8.5561 18 8 3.7032 0.4636 9.7657 19 6 2.6026 0.0865 10.4472 20 1 1.8892 -0.5846 9.9921 21 6 2.3868 0.5603 11.7322 22 7 1.3131 0.1920 12.3974 23 14 3.6210 1.7204 12.5196 24 1 4.6459 0.9317 13.2496 25 1 2.9187 2.6196 13.4702 26 1 4.2797 2.5323 11.4651 27 6 5.0752 0.1410 7.8488 28 6 5.2829 -0.4554 6.6206 29 6 2.0462 -0.7336 1.2437 30 1 -0.3633 -1.0276 0.0090 31 1 -0.3633 0.5216 0.8855 32 1 -0.3633 0.5061 -0.8944 33 1 1.8559 -0.1224 -2.1256 34 1 1.5256 -1.6845 -1.3408 35 1 5.1271 -1.1267 0.0399 36 1 3.6006 -0.2366 3.9242 37 1 5.6222 -2.0928 4.5916 38 1 4.0462 -2.9105 4.7164 39 1 2.4142 -2.2163 6.3723 40 1 2.0386 -1.1667 8.5664 41 1 1.1622 0.5232 13.2966 42 1 5.8211 0.8047 8.2606 43 1 6.1919 -0.2578 6.0719 44 1 1.7995 -1.7928 1.1723 45 1 1.5872 -0.3081 2.1361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292941336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:24 Heat of formation + Delta-G solvation = -87.685702 kcal Electronic energy + Delta-G solvation = -27295.175279 eV Core-core repulsion = 23277.656597 eV Total energy + Delta-G solvation = -4017.518682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.12952 -39.67383 -39.18955 -37.25839 -36.92829 -34.75848 -34.33778 -32.55299 -31.03495 -30.45467 -29.69970 -28.33275 -26.39367 -25.22573 -24.14915 -22.27408 -21.94375 -20.78469 -20.72364 -19.65964 -18.15439 -18.00769 -17.48173 -17.27852 -16.81757 -15.91407 -15.50549 -15.43331 -15.04212 -14.78435 -14.56841 -14.44934 -14.10495 -13.96765 -13.89331 -13.77609 -13.48036 -13.07747 -12.91232 -12.79858 -12.58630 -12.33839 -12.23142 -12.12064 -11.85471 -11.58302 -11.40452 -11.26688 -11.06335 -10.90749 -10.85912 -10.40204 -10.28742 -10.01422 -9.56221 -9.41321 -9.21624 -9.01221 -8.47052 -7.56674 -6.56225 -4.23455 1.82471 1.93938 2.24579 2.31734 2.78481 3.11739 3.16208 3.20544 3.29663 4.07332 4.10982 4.11489 4.14346 4.20034 4.32830 4.56591 4.65623 4.67249 4.88629 4.95652 5.02756 5.06192 5.10627 5.19279 5.23657 5.27502 5.34702 5.46130 5.50398 5.62006 5.66200 5.72966 5.78543 5.94642 6.15511 6.23393 6.37116 6.40492 6.58883 6.80613 6.95605 7.03059 7.09834 7.30395 7.41778 7.63395 7.86985 7.87328 7.95570 8.78056 9.37955 10.50713 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002062 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.688119 B =13573.846960 C =14281.425192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.525 3.475 6 O -0.556 6.556 7 N -0.699 5.699 8 C 0.125 3.875 9 H 0.100 0.900 10 C 0.498 3.502 11 O -0.534 6.534 12 N -0.715 5.715 13 C 0.178 3.822 14 C -0.209 4.209 15 C -0.051 4.051 16 C -0.224 4.224 17 C 0.167 3.833 18 O -0.211 6.211 19 C -0.392 4.392 20 H 0.108 0.892 21 C 0.065 3.935 22 N -0.874 5.874 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.195 4.195 28 C -0.055 4.055 29 C -0.124 4.124 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.405 0.595 36 H 0.404 0.596 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.281 0.719 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 1.603 -20.420 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.102 0.898 4 C -0.172 4.172 5 C 0.312 3.688 6 O -0.434 6.434 7 N -0.352 5.352 8 C 0.016 3.984 9 H 0.118 0.882 10 C 0.282 3.718 11 O -0.410 6.410 12 N -0.366 5.366 13 C 0.055 3.945 14 C -0.211 4.211 15 C -0.070 4.070 16 C -0.243 4.243 17 C 0.114 3.886 18 O -0.115 6.115 19 C -0.468 4.468 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.510 5.510 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.206 1.206 26 H -0.183 1.183 27 C -0.214 4.214 28 C -0.074 4.074 29 C -0.163 4.163 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.242 0.758 36 H 0.239 0.761 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.100 0.900 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.264 0.929 -20.784 20.807 hybrid contribution 0.436 0.675 0.903 1.208 sum 0.700 1.603 -19.881 19.958 Atomic orbital electron populations 1.21818 0.93532 1.02546 1.02580 1.21263 0.97020 0.99809 0.93137 0.89834 1.21780 0.91615 1.03554 1.00257 1.20155 0.90425 0.75829 0.82380 1.90773 1.68387 1.49112 1.35145 1.45232 1.13738 1.70138 1.06116 1.20901 0.95102 0.98844 0.83581 0.88239 1.20738 0.79916 0.87186 0.83936 1.90752 1.43896 1.23728 1.82625 1.46315 1.60407 1.24509 1.05413 1.20034 0.98867 0.92464 0.83088 1.19238 0.97861 1.06643 0.97329 1.20695 0.95493 0.97065 0.93749 1.21282 1.01914 1.03351 0.97796 1.19193 0.92854 0.90561 0.86008 1.83577 1.44069 1.57734 1.26153 1.20785 0.97974 1.30342 0.97671 0.87460 1.24498 0.96964 0.97452 0.95031 1.69644 1.25728 1.43057 1.12611 0.86169 0.80674 0.80634 0.79378 1.19764 1.20643 1.18325 1.20218 0.97505 1.06926 0.96795 1.20533 0.97592 0.95018 0.94279 1.21977 0.91223 1.02974 1.00085 0.92182 0.91784 0.92023 0.87888 0.87946 0.75847 0.76144 0.91270 0.91257 0.87094 0.84764 0.90838 0.86338 0.86774 0.90005 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.19 37.16 0.34 -0.26 16 2 C -0.09 -0.46 2.80 -90.41 -0.25 -0.71 16 3 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 4 C -0.13 -0.89 5.36 -28.10 -0.15 -1.04 16 5 C 0.52 5.49 7.71 -11.87 -0.09 5.40 16 6 O -0.56 -8.21 17.78 5.56 0.10 -8.11 16 7 N -0.70 -6.55 4.79 -55.99 -0.27 -6.82 16 8 C 0.13 0.90 3.46 -69.53 -0.24 0.66 16 9 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 10 C 0.50 5.07 6.99 -10.99 -0.08 5.00 16 11 O -0.53 -7.68 16.38 5.55 0.09 -7.59 16 12 N -0.71 -6.73 5.55 -61.48 -0.34 -7.07 16 13 C 0.18 2.06 5.80 -5.19 -0.03 2.03 16 14 C -0.21 -2.86 5.25 -104.58 -0.55 -3.41 16 15 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 16 C -0.22 -4.28 9.17 -39.39 -0.36 -4.65 16 17 C 0.17 3.48 6.65 -39.11 -0.26 3.22 16 18 O -0.21 -5.18 8.59 0.04 0.00 -5.18 16 19 C -0.39 -10.38 9.95 30.88 0.31 -10.07 16 20 H 0.11 2.89 5.44 -52.49 -0.29 2.60 16 21 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 22 N -0.87 -24.05 13.96 55.48 0.77 -23.28 16 23 Si 0.91 20.54 28.62 -169.99 -4.86 15.67 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 27 C -0.20 -3.40 9.99 -39.39 -0.39 -3.80 16 28 C -0.06 -0.79 9.69 -39.61 -0.38 -1.18 16 29 C -0.12 -0.71 4.58 -26.59 -0.12 -0.83 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.40 4.16 8.44 -40.82 -0.34 3.82 16 36 H 0.40 3.07 8.46 -40.82 -0.35 2.72 16 37 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 38 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 41 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -32.17 378.57 -7.86 -40.03 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.31 Total: 5.80 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.74 Total: -9.17 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.17 Total: -37.16 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.19 Total: -20.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.17 -7.86 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292941336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.655 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds