Wall clock time and date at job start Tue Mar 31 2020 17:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.67275 * 2 1 4 4 C 1.53068 * 109.67458 * 239.49883 * 2 1 3 5 5 C 1.50173 * 109.89342 * 191.36627 * 4 2 1 6 6 O 1.21273 * 118.24818 * 197.60302 * 5 4 2 7 7 N 1.33360 * 123.50543 * 17.58362 * 5 4 2 8 8 C 1.45750 * 124.10799 * 357.77209 * 7 5 4 9 9 H 1.08994 * 109.30337 * 258.97419 * 8 7 5 10 10 C 1.50700 * 109.30020 * 139.38907 * 8 7 5 11 11 O 1.21283 * 119.99990 * 339.99859 * 10 8 7 12 12 N 1.34773 * 120.00321 * 160.00087 * 10 8 7 13 13 C 1.46503 * 120.00314 * 179.97438 * 12 10 8 14 14 C 1.50694 * 109.47113 * 179.97438 * 13 12 10 15 15 C 1.38310 * 119.92958 * 90.00165 * 14 13 12 16 16 C 1.38101 * 120.07029 * 179.97438 * 15 14 13 17 17 C 1.38879 * 119.93021 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.07039 * 179.97438 * 17 16 15 19 19 C 1.34833 * 116.99784 * 5.52986 * 18 17 16 20 20 H 1.07998 * 119.99914 * 354.94279 * 19 18 17 21 21 C 1.38648 * 119.99755 * 174.94557 * 19 18 17 22 22 N 1.31562 * 119.99776 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00398 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47175 * 270.00424 * 23 21 19 25 25 H 1.48505 * 109.47461 * 150.00310 * 23 21 19 26 26 H 1.48496 * 109.47191 * 30.00111 * 23 21 19 27 27 C 1.38883 * 119.86438 * 0.24989 * 17 16 15 28 28 C 1.38109 * 119.92576 * 359.49389 * 27 17 16 29 29 C 1.52925 * 110.48607 * 19.08163 * 8 7 5 30 30 H 1.08999 * 109.47110 * 180.50211 * 1 2 3 31 31 H 1.09002 * 109.46798 * 300.50326 * 1 2 3 32 32 H 1.08998 * 109.46919 * 60.49880 * 1 2 3 33 33 H 1.08996 * 109.40137 * 71.23616 * 4 2 1 34 34 H 1.08998 * 109.32734 * 311.45387 * 4 2 1 35 35 H 0.97001 * 117.94641 * 177.75212 * 7 5 4 36 36 H 0.97007 * 119.99954 * 0.02562 * 12 10 8 37 37 H 1.08996 * 109.46707 * 60.00415 * 13 12 10 38 38 H 1.08996 * 109.47127 * 300.00506 * 13 12 10 39 39 H 1.07997 * 119.96371 * 359.95631 * 15 14 13 40 40 H 1.07999 * 120.03644 * 180.02562 * 16 15 14 41 41 H 0.97008 * 120.00054 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.03752 * 179.72846 * 27 17 16 43 43 H 1.07996 * 119.96255 * 180.23588 * 28 27 17 44 44 H 1.08994 * 109.60384 * 68.99959 * 29 8 7 45 45 H 1.09003 * 109.60204 * 189.48865 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0454 -0.7316 -1.2419 5 6 3.5210 -0.9790 -1.1136 6 8 4.1475 -1.2466 -2.1169 7 7 4.1794 -0.9198 0.0446 8 6 3.5643 -0.5642 1.3172 9 1 3.7969 0.4744 1.5521 10 6 4.1129 -1.4550 2.4018 11 8 4.6376 -2.5096 2.1128 12 7 4.0206 -1.0799 3.6930 13 6 4.5534 -1.9462 4.7474 14 6 4.3259 -1.3013 6.0902 15 6 3.1602 -1.5561 6.7896 16 6 2.9489 -0.9670 8.0206 17 6 3.9082 -0.1175 8.5561 18 8 3.7032 0.4636 9.7657 19 6 2.6026 0.0865 10.4472 20 1 1.8892 -0.5846 9.9921 21 6 2.3868 0.5603 11.7322 22 7 1.3131 0.1920 12.3974 23 14 3.6210 1.7204 12.5196 24 1 4.6459 0.9317 13.2496 25 1 2.9187 2.6196 13.4702 26 1 4.2797 2.5323 11.4651 27 6 5.0752 0.1410 7.8488 28 6 5.2829 -0.4554 6.6206 29 6 2.0462 -0.7336 1.2437 30 1 -0.3633 -1.0276 0.0090 31 1 -0.3633 0.5216 0.8855 32 1 -0.3633 0.5061 -0.8944 33 1 1.8559 -0.1224 -2.1256 34 1 1.5256 -1.6845 -1.3408 35 1 5.1271 -1.1267 0.0399 36 1 3.6006 -0.2366 3.9242 37 1 5.6222 -2.0928 4.5916 38 1 4.0462 -2.9105 4.7164 39 1 2.4142 -2.2163 6.3723 40 1 2.0386 -1.1667 8.5664 41 1 1.1622 0.5232 13.2966 42 1 5.8211 0.8047 8.2606 43 1 6.1919 -0.2578 6.0719 44 1 1.7995 -1.7928 1.1723 45 1 1.5872 -0.3081 2.1361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292941336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:23 Heat of formation + Delta-G solvation = -110.622909 kcal Electronic energy + Delta-G solvation = -27296.169911 eV Core-core repulsion = 23277.656597 eV Total energy + Delta-G solvation = -4018.513314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.87761 -40.97687 -40.29731 -38.63214 -37.70971 -35.78009 -34.98899 -34.43933 -32.08366 -31.81357 -30.66023 -28.80022 -27.79980 -26.46705 -25.09652 -23.70260 -22.55513 -22.06936 -21.57096 -20.22554 -19.84367 -19.18601 -18.77839 -18.10097 -17.60406 -16.77713 -16.68392 -16.34944 -16.21943 -15.83813 -15.76785 -15.59559 -15.42922 -15.17341 -14.94207 -14.62097 -14.40852 -14.26463 -14.22992 -14.04768 -13.48900 -13.34072 -13.10725 -12.98829 -12.77133 -12.59460 -12.46160 -12.42181 -12.31902 -11.93788 -11.89813 -11.64929 -11.29142 -11.24838 -10.92582 -10.80273 -10.21937 -10.10426 -9.81906 -9.08053 -8.50177 -6.22978 0.49220 0.56311 1.33417 1.36203 1.45202 1.50760 1.52678 1.99758 2.27853 2.40093 2.79448 3.03776 3.17218 3.50685 3.56536 3.63144 3.72961 3.84773 4.00354 4.02554 4.15541 4.19483 4.43272 4.45408 4.55821 4.67495 4.68546 4.73607 4.79088 4.83141 4.84477 4.96976 4.97272 5.14884 5.23750 5.32113 5.34549 5.36496 5.47974 5.55203 5.63053 5.71806 5.80157 5.89443 6.20083 6.21905 6.51022 6.84244 7.08280 7.16517 7.57604 8.60925 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002062 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.688119 B =13573.846960 C =14281.425192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.097 0.903 4 C -0.128 4.128 5 C 0.520 3.480 6 O -0.608 6.608 7 N -0.699 5.699 8 C 0.129 3.871 9 H 0.135 0.865 10 C 0.503 3.497 11 O -0.577 6.577 12 N -0.704 5.704 13 C 0.182 3.818 14 C -0.173 4.173 15 C -0.048 4.048 16 C -0.238 4.238 17 C 0.129 3.871 18 O -0.243 6.243 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.269 1.269 26 H -0.260 1.260 27 C -0.193 4.193 28 C -0.044 4.044 29 C -0.124 4.124 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.398 0.602 36 H 0.417 0.583 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.284 0.716 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.068 0.932 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.741 2.662 -22.397 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.115 0.885 4 C -0.168 4.168 5 C 0.309 3.691 6 O -0.491 6.491 7 N -0.349 5.349 8 C 0.021 3.979 9 H 0.152 0.848 10 C 0.289 3.711 11 O -0.457 6.457 12 N -0.356 5.356 13 C 0.059 3.941 14 C -0.174 4.174 15 C -0.066 4.066 16 C -0.257 4.257 17 C 0.079 3.921 18 O -0.150 6.150 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.189 4.189 22 N -0.562 5.562 23 Si 0.792 3.208 24 H -0.193 1.193 25 H -0.194 1.194 26 H -0.184 1.184 27 C -0.212 4.212 28 C -0.063 4.063 29 C -0.162 4.162 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.233 0.767 36 H 0.254 0.746 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.147 0.853 43 H 0.171 0.829 44 H 0.087 0.913 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.182 2.006 -22.773 22.892 hybrid contribution 0.259 0.164 1.141 1.181 sum 1.441 2.170 -21.633 21.789 Atomic orbital electron populations 1.21803 0.92635 1.02612 1.03234 1.21229 0.97559 0.99982 0.91498 0.88478 1.21823 0.88826 1.04310 1.01815 1.20832 0.91741 0.74731 0.81811 1.90745 1.69724 1.51640 1.36944 1.45348 1.13530 1.69288 1.06776 1.21118 0.95784 0.99607 0.81408 0.84783 1.21163 0.78897 0.86737 0.84345 1.90750 1.45912 1.25779 1.83219 1.46064 1.60076 1.24646 1.04789 1.19914 0.99545 0.92514 0.82114 1.19503 0.96225 1.04118 0.97585 1.20923 0.96795 0.96634 0.92260 1.21273 1.01036 1.04154 0.99267 1.19765 0.94757 0.91986 0.85588 1.83526 1.43613 1.59890 1.27958 1.20703 0.98482 1.30058 0.98172 0.89826 1.25278 0.98773 0.99245 0.95580 1.69730 1.27717 1.45430 1.13310 0.85233 0.78458 0.78750 0.78399 1.19334 1.19432 1.18421 1.20518 0.96339 1.06907 0.97433 1.20947 0.98816 0.93501 0.92997 1.22046 0.89979 1.02588 1.01548 0.92454 0.91112 0.91430 0.86999 0.87507 0.76692 0.74606 0.90575 0.91306 0.84634 0.87315 0.90586 0.85293 0.82873 0.91324 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.19 71.98 0.66 -0.05 16 2 C -0.08 -0.54 2.80 -10.65 -0.03 -0.57 16 3 H 0.10 0.42 8.13 -2.39 -0.02 0.40 16 4 C -0.13 -1.46 5.36 29.71 0.16 -1.30 16 5 C 0.52 10.32 7.71 87.71 0.68 11.00 16 6 O -0.61 -18.07 17.78 -3.01 -0.05 -18.13 16 7 N -0.70 -11.88 4.79 -450.24 -2.16 -14.03 16 8 C 0.13 1.42 3.46 44.36 0.15 1.57 16 9 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 10 C 0.50 8.60 6.99 87.66 0.61 9.21 16 11 O -0.58 -15.39 16.38 -3.04 -0.05 -15.44 16 12 N -0.70 -10.19 5.55 -466.80 -2.59 -12.78 16 13 C 0.18 3.45 5.80 85.63 0.50 3.94 16 14 C -0.17 -4.05 5.25 -19.83 -0.10 -4.15 16 15 C -0.05 -1.35 9.69 22.25 0.22 -1.13 16 16 C -0.24 -9.17 9.17 22.39 0.21 -8.97 16 17 C 0.13 5.38 6.65 22.58 0.15 5.53 16 18 O -0.24 -12.26 8.59 -22.77 -0.20 -12.45 16 19 C -0.40 -22.14 9.95 67.92 0.68 -21.46 16 20 H 0.08 4.86 5.44 -2.91 -0.02 4.84 16 21 C 0.01 0.55 5.49 84.83 0.47 1.02 16 22 N -0.92 -53.06 13.96 21.61 0.30 -52.75 16 23 Si 0.97 43.36 28.62 68.60 1.96 45.32 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 C -0.19 -6.30 9.99 22.39 0.22 -6.08 16 28 C -0.04 -1.08 9.69 22.25 0.22 -0.86 16 29 C -0.12 -0.97 4.58 30.68 0.14 -0.83 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.40 7.78 8.44 -92.71 -0.78 7.00 16 36 H 0.42 4.20 8.46 -92.70 -0.78 3.41 16 37 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 38 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 39 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.11 4.74 5.64 -2.91 -0.02 4.72 16 41 H 0.28 15.06 8.31 -92.70 -0.77 14.28 16 42 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 43 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 45 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -75.30 378.57 1.61 -73.69 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.53 Total: 19.71 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.92 Total: -13.14 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -4.44 Total: -79.57 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.30 Total: -46.02 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.96 Total: 45.32 kcal Total: -75.30 1.61 -73.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292941336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.933 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds