Wall clock time and date at job start Tue Mar 31 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46622 * 2 1 4 4 C 1.50705 * 109.47073 * 119.99404 * 2 1 3 5 5 O 1.21276 * 119.99447 * 22.25273 * 4 2 1 6 6 N 1.34772 * 119.99880 * 202.24650 * 4 2 1 7 7 C 1.46962 * 120.59420 * 4.68370 * 6 4 2 8 8 C 1.53816 * 108.39786 * 124.75838 * 7 6 4 9 9 N 1.46970 * 108.58132 * 49.63411 * 8 7 6 10 10 C 1.36937 * 120.59272 * 124.66584 * 9 8 7 11 11 H 1.07999 * 120.00249 * 208.24991 * 10 9 8 12 12 C 1.38808 * 119.99768 * 28.26151 * 10 9 8 13 13 N 1.31621 * 120.00512 * 17.11722 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 197.11643 * 12 10 9 15 15 H 1.48502 * 109.46632 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47329 * 119.99550 * 14 12 10 17 17 H 1.48498 * 109.47178 * 239.99970 * 14 12 10 18 18 C 1.46960 * 118.80992 * 304.65041 * 9 8 7 19 19 C 1.46970 * 120.59197 * 184.95979 * 6 4 2 20 20 C 1.50693 * 109.47635 * 239.99921 * 2 1 3 21 21 C 1.38257 * 119.92529 * 299.73114 * 20 2 1 22 22 C 1.38240 * 120.14216 * 179.69092 * 21 20 2 23 23 C 1.38543 * 120.02731 * 0.58629 * 22 21 20 24 24 C 1.39275 * 119.82986 * 359.68624 * 23 22 21 25 25 C 1.38237 * 119.93082 * 119.99432 * 20 2 1 26 26 O 1.36497 * 108.63714 * 179.97438 * 24 23 22 27 27 C 1.43983 * 105.48871 * 342.72062 * 26 24 23 28 28 O 1.36506 * 131.53152 * 179.68686 * 23 22 21 29 29 H 1.09006 * 109.47469 * 56.73488 * 1 2 3 30 30 H 1.09001 * 109.47347 * 296.73292 * 1 2 3 31 31 H 1.09004 * 109.46843 * 176.72878 * 1 2 3 32 32 H 1.09006 * 109.60733 * 244.53544 * 7 6 4 33 33 H 1.08992 * 109.61114 * 5.05085 * 7 6 4 34 34 H 1.08996 * 109.74220 * 289.84649 * 8 7 6 35 35 H 1.08997 * 109.53339 * 169.30248 * 8 7 6 36 36 H 0.96998 * 120.00172 * 180.02562 * 13 12 10 37 37 H 1.09008 * 109.61253 * 295.47797 * 18 9 8 38 38 H 1.09005 * 109.74864 * 175.05478 * 18 9 8 39 39 H 1.08997 * 109.61095 * 354.95099 * 19 6 4 40 40 H 1.08996 * 109.60756 * 115.45949 * 19 6 4 41 41 H 1.08002 * 119.92816 * 359.96624 * 21 20 2 42 42 H 1.07995 * 119.98679 * 180.26979 * 22 21 20 43 43 H 1.07994 * 119.98526 * 0.02562 * 25 20 2 44 44 H 1.09003 * 110.57382 * 268.55999 * 27 26 24 45 45 H 1.09000 * 110.57268 * 145.68383 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3179 -1.5025 1.8074 6 7 3.2754 -0.4652 1.6898 7 6 4.1146 0.5657 1.0631 8 6 4.5615 1.5560 2.1519 9 7 5.1044 0.7930 3.2846 10 6 6.3675 1.0420 3.7513 11 1 6.9329 0.2538 4.2261 12 6 6.9210 2.3075 3.6141 13 7 6.1468 3.3401 3.3560 14 14 8.7650 2.5451 3.7958 15 1 9.4067 1.2368 4.0818 16 1 9.3188 3.1026 2.5358 17 1 9.0352 3.4845 4.9137 18 6 4.2672 -0.2418 3.9077 19 6 3.8183 -1.2282 2.8226 20 6 2.0324 -0.7104 -1.2304 21 6 1.7021 -2.0357 -1.4448 22 6 2.1553 -2.6899 -2.5752 23 6 2.9523 -2.0215 -3.4903 24 6 3.2897 -0.6881 -3.2715 25 6 2.8270 -0.0371 -2.1394 26 8 4.0739 -0.2614 -4.3040 27 6 4.5491 -1.4592 -4.9463 28 8 3.5247 -2.4300 -4.6603 29 1 -0.3634 0.5637 -0.8593 30 1 -0.3634 0.4623 0.9178 31 1 -0.3633 -1.0260 -0.0586 32 1 4.9885 0.0992 0.6082 33 1 3.5396 1.0921 0.3014 34 1 3.7083 2.1472 2.4845 35 1 5.3322 2.2145 1.7515 36 1 6.5337 4.2244 3.2598 37 1 3.3930 0.2214 4.3654 38 1 4.8411 -0.7710 4.6685 39 1 3.0476 -1.8868 3.2230 40 1 4.6715 -1.8194 2.4900 41 1 1.0851 -2.5597 -0.7299 42 1 1.8922 -3.7238 -2.7423 43 1 3.0873 0.9967 -1.9670 44 1 5.5023 -1.7706 -4.5190 45 1 4.6420 -1.3062 -6.0215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293284814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:37 Heat of formation + Delta-G solvation = -36.124127 kcal Electronic energy + Delta-G solvation = -29308.967675 eV Core-core repulsion = 25293.684871 eV Total energy + Delta-G solvation = -4015.282804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.32645 -40.15240 -38.12333 -36.80710 -36.44617 -33.95733 -33.61223 -31.30112 -30.71642 -30.16316 -29.07467 -27.11268 -25.97764 -24.76893 -23.63160 -23.11361 -22.86899 -22.02540 -20.26848 -18.71472 -18.05095 -17.79696 -17.63342 -16.78818 -16.54991 -16.03272 -15.49900 -15.28912 -14.75989 -14.63860 -14.25470 -14.04686 -13.78037 -13.70605 -13.63881 -13.37534 -13.24849 -13.16246 -13.12794 -12.76217 -12.45018 -12.10431 -11.74521 -11.69187 -11.49760 -11.38482 -10.98483 -10.97094 -10.84054 -10.72147 -10.50560 -10.26174 -10.03814 -9.86939 -9.43696 -8.95371 -8.62960 -8.25887 -8.15696 -6.74299 -5.88840 -3.33195 0.94067 1.06844 2.52610 2.93980 3.24721 3.31213 3.34606 3.39929 3.41812 3.50189 4.30342 4.41540 4.46743 4.56613 4.69323 4.76249 4.85819 4.98523 5.06590 5.16009 5.17976 5.29672 5.36264 5.39644 5.72576 5.74249 5.81124 5.85750 5.89980 5.92971 5.94358 6.05198 6.11328 6.15930 6.20554 6.24507 6.32225 6.37332 6.41699 6.76375 6.90410 6.95078 7.17761 7.42331 7.69694 7.89051 8.32699 8.51692 9.09017 9.71501 10.28374 11.18921 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012055 B = 0.003708 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.060805 B = 7548.873329 C = 9001.354594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 H 0.105 0.895 4 C 0.519 3.481 5 O -0.555 6.555 6 N -0.592 5.592 7 C 0.079 3.921 8 C 0.157 3.843 9 N -0.591 5.591 10 C -0.255 4.255 11 H 0.068 0.932 12 C 0.004 3.996 13 N -0.902 5.902 14 Si 0.903 3.097 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.290 1.290 18 C 0.132 3.868 19 C 0.095 3.905 20 C -0.059 4.059 21 C -0.096 4.096 22 C -0.097 4.097 23 C 0.027 3.973 24 C 0.034 3.966 25 C -0.089 4.089 26 O -0.308 6.308 27 C 0.213 3.787 28 O -0.311 6.311 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.101 0.899 36 H 0.255 0.745 37 H 0.024 0.976 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 -8.185 -14.632 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 H 0.123 0.877 4 C 0.306 3.694 5 O -0.434 6.434 6 N -0.323 5.323 7 C -0.045 4.045 8 C 0.031 3.969 9 N -0.314 5.314 10 C -0.384 4.384 11 H 0.086 0.914 12 C -0.195 4.195 13 N -0.547 5.547 14 Si 0.733 3.267 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.216 1.216 18 C 0.005 3.995 19 C -0.029 4.029 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.017 4.017 24 C -0.011 4.011 25 C -0.108 4.108 26 O -0.224 6.224 27 C 0.101 3.899 28 O -0.228 6.228 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.102 0.898 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.753 -8.390 -14.541 18.492 hybrid contribution 1.359 0.342 -0.180 1.413 sum -6.395 -8.048 -14.721 17.955 Atomic orbital electron populations 1.21643 0.91437 1.03209 1.02241 1.20312 0.98236 1.00307 0.90356 0.87699 1.20262 0.81515 0.82550 0.85038 1.90627 1.55867 1.37269 1.59632 1.48045 1.14067 1.37357 1.32819 1.22845 0.93794 0.90446 0.97415 1.21280 0.98243 0.91284 0.86135 1.43986 1.13615 1.40613 1.33173 1.19252 0.89656 0.93898 1.35610 0.91428 1.25057 0.98299 0.95108 1.01009 1.70015 1.33411 0.98492 1.52743 0.86218 0.85318 0.77806 0.77406 1.20201 1.21474 1.21644 1.21289 0.94456 0.90641 0.93115 1.22210 0.98018 0.94790 0.87850 1.19166 0.97618 0.94187 0.95016 1.20891 0.99885 0.93938 0.96650 1.20029 0.99125 1.00345 0.92092 1.19821 1.00949 0.92930 0.88016 1.19671 0.98074 0.92325 0.90984 1.19969 0.99274 1.01154 0.90395 1.87371 1.63642 1.30457 1.40944 1.25624 0.90772 0.73381 1.00094 1.87350 1.49606 1.49442 1.36385 0.91892 0.91631 0.91399 0.91844 0.91061 0.95773 0.88143 0.93524 0.95830 0.91577 0.89951 0.92019 0.83998 0.84685 0.84298 0.89813 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.49 37.16 0.32 -1.14 16 2 C -0.07 -0.92 2.10 -92.93 -0.19 -1.11 16 3 H 0.11 1.27 5.95 -51.93 -0.31 0.96 16 4 C 0.52 8.59 6.44 -10.99 -0.07 8.52 16 5 O -0.55 -10.41 15.54 5.56 0.09 -10.32 16 6 N -0.59 -10.44 2.94 -172.22 -0.51 -10.94 16 7 C 0.08 1.39 6.47 -3.37 -0.02 1.37 16 8 C 0.16 3.49 5.53 -3.36 -0.02 3.47 16 9 N -0.59 -14.20 2.97 -171.76 -0.51 -14.71 16 10 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 11 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 12 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 13 N -0.90 -25.03 11.18 55.49 0.62 -24.41 16 14 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 C 0.13 2.73 6.67 -3.60 -0.02 2.71 16 19 C 0.10 1.73 6.60 -3.59 -0.02 1.71 16 20 C -0.06 -0.73 4.71 -104.62 -0.49 -1.22 16 21 C -0.10 -1.14 8.76 -39.57 -0.35 -1.49 16 22 C -0.10 -1.11 10.06 -39.47 -0.40 -1.51 16 23 C 0.03 0.34 7.15 -39.08 -0.28 0.06 16 24 C 0.03 0.43 7.15 -39.08 -0.28 0.15 16 25 C -0.09 -1.09 9.28 -39.47 -0.37 -1.46 16 26 O -0.31 -3.77 11.40 -45.68 -0.52 -4.29 16 27 C 0.21 1.94 8.89 101.05 0.90 2.83 16 28 O -0.31 -3.65 11.40 -45.71 -0.52 -4.17 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.79 7.14 -51.93 -0.37 0.42 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.05 4.72 -51.93 -0.25 0.80 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 2.47 5.98 -51.93 -0.31 2.16 16 36 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.07 1.31 7.94 -51.93 -0.41 0.89 16 39 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.14 1.66 7.55 -52.49 -0.40 1.27 16 42 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.14 1.52 7.68 -52.49 -0.40 1.12 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -31.36 362.47 -8.61 -39.98 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.16 Total: 1.49 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -1.53 Total: 6.05 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.40 Total: -50.06 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.96 Total: -18.78 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.36 -8.61 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293284814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.852 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds