Wall clock time and date at job start Tue Mar 31 2020 17:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46622 * 2 1 4 4 C 1.50705 * 109.47073 * 119.99404 * 2 1 3 5 5 O 1.21276 * 119.99447 * 22.25273 * 4 2 1 6 6 N 1.34772 * 119.99880 * 202.24650 * 4 2 1 7 7 C 1.46962 * 120.59420 * 4.68370 * 6 4 2 8 8 C 1.53816 * 108.39786 * 124.75838 * 7 6 4 9 9 N 1.46970 * 108.58132 * 49.63411 * 8 7 6 10 10 C 1.36937 * 120.59272 * 124.66584 * 9 8 7 11 11 H 1.07999 * 120.00249 * 208.24991 * 10 9 8 12 12 C 1.38808 * 119.99768 * 28.26151 * 10 9 8 13 13 N 1.31621 * 120.00512 * 17.11722 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 197.11643 * 12 10 9 15 15 H 1.48502 * 109.46632 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47329 * 119.99550 * 14 12 10 17 17 H 1.48498 * 109.47178 * 239.99970 * 14 12 10 18 18 C 1.46960 * 118.80992 * 304.65041 * 9 8 7 19 19 C 1.46970 * 120.59197 * 184.95979 * 6 4 2 20 20 C 1.50693 * 109.47635 * 239.99921 * 2 1 3 21 21 C 1.38257 * 119.92529 * 299.73114 * 20 2 1 22 22 C 1.38240 * 120.14216 * 179.69092 * 21 20 2 23 23 C 1.38543 * 120.02731 * 0.58629 * 22 21 20 24 24 C 1.39275 * 119.82986 * 359.68624 * 23 22 21 25 25 C 1.38237 * 119.93082 * 119.99432 * 20 2 1 26 26 O 1.36497 * 108.63714 * 179.97438 * 24 23 22 27 27 C 1.43983 * 105.48871 * 342.72062 * 26 24 23 28 28 O 1.36506 * 131.53152 * 179.68686 * 23 22 21 29 29 H 1.09006 * 109.47469 * 56.73488 * 1 2 3 30 30 H 1.09001 * 109.47347 * 296.73292 * 1 2 3 31 31 H 1.09004 * 109.46843 * 176.72878 * 1 2 3 32 32 H 1.09006 * 109.60733 * 244.53544 * 7 6 4 33 33 H 1.08992 * 109.61114 * 5.05085 * 7 6 4 34 34 H 1.08996 * 109.74220 * 289.84649 * 8 7 6 35 35 H 1.08997 * 109.53339 * 169.30248 * 8 7 6 36 36 H 0.96998 * 120.00172 * 180.02562 * 13 12 10 37 37 H 1.09008 * 109.61253 * 295.47797 * 18 9 8 38 38 H 1.09005 * 109.74864 * 175.05478 * 18 9 8 39 39 H 1.08997 * 109.61095 * 354.95099 * 19 6 4 40 40 H 1.08996 * 109.60756 * 115.45949 * 19 6 4 41 41 H 1.08002 * 119.92816 * 359.96624 * 21 20 2 42 42 H 1.07995 * 119.98679 * 180.26979 * 22 21 20 43 43 H 1.07994 * 119.98526 * 0.02562 * 25 20 2 44 44 H 1.09003 * 110.57382 * 268.55999 * 27 26 24 45 45 H 1.09000 * 110.57268 * 145.68383 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3179 -1.5025 1.8074 6 7 3.2754 -0.4652 1.6898 7 6 4.1146 0.5657 1.0631 8 6 4.5615 1.5560 2.1519 9 7 5.1044 0.7930 3.2846 10 6 6.3675 1.0420 3.7513 11 1 6.9329 0.2538 4.2261 12 6 6.9210 2.3075 3.6141 13 7 6.1468 3.3401 3.3560 14 14 8.7650 2.5451 3.7958 15 1 9.4067 1.2368 4.0818 16 1 9.3188 3.1026 2.5358 17 1 9.0352 3.4845 4.9137 18 6 4.2672 -0.2418 3.9077 19 6 3.8183 -1.2282 2.8226 20 6 2.0324 -0.7104 -1.2304 21 6 1.7021 -2.0357 -1.4448 22 6 2.1553 -2.6899 -2.5752 23 6 2.9523 -2.0215 -3.4903 24 6 3.2897 -0.6881 -3.2715 25 6 2.8270 -0.0371 -2.1394 26 8 4.0739 -0.2614 -4.3040 27 6 4.5491 -1.4592 -4.9463 28 8 3.5247 -2.4300 -4.6603 29 1 -0.3634 0.5637 -0.8593 30 1 -0.3634 0.4623 0.9178 31 1 -0.3633 -1.0260 -0.0586 32 1 4.9885 0.0992 0.6082 33 1 3.5396 1.0921 0.3014 34 1 3.7083 2.1472 2.4845 35 1 5.3322 2.2145 1.7515 36 1 6.5337 4.2244 3.2598 37 1 3.3930 0.2214 4.3654 38 1 4.8411 -0.7710 4.6685 39 1 3.0476 -1.8868 3.2230 40 1 4.6715 -1.8194 2.4900 41 1 1.0851 -2.5597 -0.7299 42 1 1.8922 -3.7238 -2.7423 43 1 3.0873 0.9967 -1.9670 44 1 5.5023 -1.7706 -4.5190 45 1 4.6420 -1.3062 -6.0215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293284814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:36 Heat of formation + Delta-G solvation = -54.390297 kcal Electronic energy + Delta-G solvation = -29309.759756 eV Core-core repulsion = 25293.684871 eV Total energy + Delta-G solvation = -4016.074885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.17056 -41.43035 -39.22014 -38.34177 -37.29945 -35.60698 -34.73941 -33.08976 -31.81809 -31.60264 -29.95999 -28.80696 -26.75011 -26.10659 -25.15550 -24.33910 -23.99827 -23.27384 -21.74332 -20.10658 -19.14299 -18.90840 -18.48616 -18.13625 -17.57266 -17.42478 -16.92498 -16.54281 -16.35290 -15.52025 -15.50246 -15.42358 -15.21481 -15.08167 -14.87507 -14.84010 -14.59526 -14.13587 -14.00717 -13.88442 -13.57081 -13.41156 -13.22779 -12.99225 -12.72095 -12.67987 -12.54068 -12.42007 -12.20049 -12.04637 -12.01539 -11.82201 -11.69898 -11.63481 -10.76945 -10.58401 -9.88539 -9.80753 -9.06451 -8.65096 -7.88618 -5.36564 0.01338 0.16858 1.47265 1.50680 1.54701 1.60222 1.79597 2.06021 2.48880 2.50144 2.52810 3.26131 3.42611 3.52769 3.58381 3.63776 3.80825 3.89602 4.05529 4.09408 4.20430 4.23854 4.23975 4.29266 4.37061 4.42381 4.51922 4.58266 4.66139 4.74941 4.82154 4.87164 4.94897 5.00858 5.03252 5.08394 5.16722 5.23806 5.29339 5.35103 5.44570 5.54447 5.61537 5.66658 6.08491 6.35992 6.50350 7.11365 7.16605 7.78950 8.32250 9.16599 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012055 B = 0.003708 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.060805 B = 7548.873329 C = 9001.354594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.064 4.064 3 H 0.115 0.885 4 C 0.519 3.481 5 O -0.576 6.576 6 N -0.599 5.599 7 C 0.098 3.902 8 C 0.163 3.837 9 N -0.609 5.609 10 C -0.265 4.265 11 H 0.068 0.932 12 C -0.043 4.043 13 N -0.932 5.932 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.294 1.294 18 C 0.132 3.868 19 C 0.105 3.895 20 C -0.063 4.063 21 C -0.098 4.098 22 C -0.097 4.097 23 C 0.018 3.982 24 C 0.020 3.980 25 C -0.093 4.093 26 O -0.323 6.323 27 C 0.204 3.796 28 O -0.322 6.322 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.002 0.998 35 H 0.075 0.925 36 H 0.252 0.748 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.099 0.901 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 -9.015 -16.164 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 H 0.133 0.867 4 C 0.308 3.692 5 O -0.457 6.457 6 N -0.330 5.330 7 C -0.026 4.026 8 C 0.036 3.964 9 N -0.332 5.332 10 C -0.395 4.395 11 H 0.086 0.914 12 C -0.239 4.239 13 N -0.577 5.577 14 Si 0.794 3.206 15 H -0.193 1.193 16 H -0.214 1.214 17 H -0.222 1.222 18 C 0.006 3.994 19 C -0.019 4.019 20 C -0.064 4.064 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.027 4.027 24 C -0.024 4.024 25 C -0.112 4.112 26 O -0.240 6.240 27 C 0.094 3.906 28 O -0.239 6.239 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.020 0.980 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.161 0.839 42 H 0.172 0.828 43 H 0.168 0.832 44 H 0.116 0.884 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.637 -9.246 -16.086 20.064 hybrid contribution 1.288 0.556 0.300 1.435 sum -6.349 -8.689 -15.787 19.106 Atomic orbital electron populations 1.21655 0.90209 1.03440 1.02963 1.20309 0.99216 1.00243 0.88736 0.86674 1.20874 0.80578 0.82111 0.85633 1.90616 1.56186 1.38289 1.60567 1.48115 1.14659 1.37407 1.32856 1.22569 0.94396 0.89499 0.96122 1.21119 0.96483 0.91891 0.86881 1.44248 1.13590 1.41266 1.34108 1.19540 0.90755 0.93980 1.35245 0.91443 1.25740 1.01947 0.94869 1.01315 1.70152 1.34876 0.98669 1.54036 0.85244 0.80787 0.77691 0.76907 1.19285 1.21369 1.22152 1.21348 0.93542 0.90375 0.94123 1.22008 0.98405 0.94067 0.87401 1.19090 0.98118 0.94394 0.94810 1.20961 0.99865 0.93896 0.96863 1.20237 0.98524 1.01222 0.91600 1.20039 1.01129 0.93054 0.88432 1.19857 0.98474 0.92671 0.91385 1.20088 0.99059 1.01707 0.90326 1.87342 1.63733 1.31984 1.40920 1.26109 0.90473 0.72032 1.02007 1.87327 1.50252 1.50259 1.36021 0.89543 0.92313 0.91658 0.91798 0.87918 0.97950 0.90678 0.93873 0.97219 0.91052 0.89313 0.91413 0.83902 0.82810 0.83232 0.88369 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.49 71.98 0.61 -2.01 16 2 C -0.06 -1.54 2.10 -12.29 -0.03 -1.56 16 3 H 0.12 2.52 5.95 -2.39 -0.01 2.50 16 4 C 0.52 16.44 6.44 87.66 0.56 17.01 16 5 O -0.58 -20.96 15.54 -3.02 -0.05 -21.00 16 6 N -0.60 -20.45 2.94 -817.16 -2.40 -22.86 16 7 C 0.10 3.34 6.47 86.57 0.56 3.90 16 8 C 0.16 7.29 5.53 86.57 0.48 7.77 16 9 N -0.61 -29.45 2.97 -697.33 -2.07 -31.52 16 10 C -0.27 -14.01 9.58 84.03 0.81 -13.21 16 11 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 12 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 13 N -0.93 -52.51 11.18 21.65 0.24 -52.27 16 14 Si 0.97 43.08 29.59 68.60 2.03 45.11 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 18 C 0.13 5.49 6.67 86.42 0.58 6.07 16 19 C 0.11 3.74 6.60 86.41 0.57 4.31 16 20 C -0.06 -1.44 4.71 -19.86 -0.09 -1.54 16 21 C -0.10 -2.16 8.76 22.27 0.20 -1.97 16 22 C -0.10 -2.05 10.06 22.34 0.22 -1.83 16 23 C 0.02 0.42 7.15 22.59 0.16 0.58 16 24 C 0.02 0.49 7.15 22.59 0.16 0.65 16 25 C -0.09 -2.11 9.28 22.34 0.21 -1.90 16 26 O -0.32 -7.36 11.40 -76.01 -0.87 -8.23 16 27 C 0.20 3.27 8.89 113.37 1.01 4.28 16 28 O -0.32 -6.94 11.40 -76.13 -0.87 -7.81 16 29 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.40 7.14 -2.39 -0.02 1.38 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.10 2.83 4.72 -2.39 -0.01 2.82 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.08 3.76 5.98 -2.39 -0.01 3.75 16 36 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 37 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.07 2.82 7.94 -2.38 -0.02 2.80 16 39 H 0.09 3.05 6.99 -2.39 -0.02 3.03 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.14 3.12 7.55 -2.91 -0.02 3.10 16 42 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.15 2.95 7.68 -2.91 -0.02 2.93 16 44 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.11 362.47 3.45 -63.66 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.01 Total: 16.25 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.42 Total: 18.67 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -4.23 Total: -106.65 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.78 Total: -37.04 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -67.11 3.45 -63.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293284814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.273 kcal (2) G-P(sol) polarization free energy of solvation -67.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds