Wall clock time and date at job start Tue Mar 31 2020 17:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46674 * 2 1 4 4 C 1.50694 * 109.47132 * 240.00333 * 2 1 3 5 5 O 1.21282 * 119.99746 * 246.13459 * 4 2 1 6 6 N 1.34776 * 120.00457 * 66.13213 * 4 2 1 7 7 C 1.46966 * 120.59179 * 3.27291 * 6 4 2 8 8 C 1.53811 * 108.39628 * 124.75614 * 7 6 4 9 9 N 1.46963 * 108.57756 * 49.64180 * 8 7 6 10 10 C 1.36937 * 120.59302 * 124.66839 * 9 8 7 11 11 H 1.08005 * 120.00062 * 211.38562 * 10 9 8 12 12 C 1.38813 * 120.00366 * 31.38671 * 10 9 8 13 13 N 1.31616 * 119.99667 * 11.22470 * 12 10 9 14 14 Si 1.86796 * 120.00119 * 191.22454 * 12 10 9 15 15 H 1.48495 * 109.47282 * 60.00155 * 14 12 10 16 16 H 1.48509 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47291 * 299.99641 * 14 12 10 18 18 C 1.46962 * 118.81386 * 304.64095 * 9 8 7 19 19 C 1.46963 * 120.59734 * 183.55587 * 6 4 2 20 20 C 1.50697 * 109.47188 * 119.99850 * 2 1 3 21 21 C 1.38251 * 119.93030 * 59.97971 * 20 2 1 22 22 C 1.38239 * 120.14688 * 179.97438 * 21 20 2 23 23 C 1.38541 * 120.02739 * 0.14056 * 22 21 20 24 24 C 1.39270 * 119.82769 * 359.88421 * 23 22 21 25 25 C 1.38237 * 119.93125 * 239.99837 * 20 2 1 26 26 O 1.36501 * 108.63938 * 179.97438 * 24 23 22 27 27 C 1.43986 * 105.48305 * 17.28599 * 26 24 23 28 28 O 1.36507 * 131.53376 * 179.88644 * 23 22 21 29 29 H 1.08994 * 109.47562 * 64.68298 * 1 2 3 30 30 H 1.09001 * 109.46782 * 184.68756 * 1 2 3 31 31 H 1.08999 * 109.47086 * 304.67650 * 1 2 3 32 32 H 1.08995 * 109.61552 * 244.54173 * 7 6 4 33 33 H 1.09002 * 109.60971 * 5.05508 * 7 6 4 34 34 H 1.09001 * 109.74718 * 289.84911 * 8 7 6 35 35 H 1.09003 * 109.53135 * 169.30717 * 8 7 6 36 36 H 0.97006 * 119.99938 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.61227 * 295.49037 * 18 9 8 38 38 H 1.08994 * 109.75197 * 175.05584 * 18 9 8 39 39 H 1.08996 * 109.60754 * 354.94787 * 19 6 4 40 40 H 1.08999 * 109.61370 * 115.46205 * 19 6 4 41 41 H 1.08009 * 119.92453 * 359.97438 * 21 20 2 42 42 H 1.08002 * 119.98288 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.98200 * 0.02562 * 25 20 2 44 44 H 1.08999 * 110.57262 * 214.31378 * 27 26 24 45 45 H 1.09003 * 110.57361 * 91.44093 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.6351 -1.7572 -1.1226 6 7 1.8118 -0.1823 -2.4507 7 6 1.1461 1.1202 -2.5929 8 6 2.0558 2.0423 -3.4223 9 7 2.4711 1.3231 -4.6348 10 6 2.2469 1.8596 -5.8745 11 1 2.0642 1.2111 -6.7186 12 6 2.2545 3.2370 -6.0465 13 7 2.6907 4.0182 -5.0813 14 14 1.6456 3.9817 -7.6477 15 1 0.2264 3.6013 -7.8625 16 1 1.7572 5.4611 -7.5796 17 1 2.4699 3.4751 -8.7743 18 6 3.1317 0.0180 -4.4929 19 6 2.2270 -0.9016 -3.6632 20 6 2.0324 -0.7104 1.2305 21 6 1.6972 -2.0338 1.4480 22 6 2.1560 -2.6900 2.5750 23 6 2.9511 -2.0210 3.4912 24 6 3.2884 -0.6876 3.2723 25 6 2.8271 -0.0372 2.1394 26 8 4.0698 -0.2597 4.3066 27 6 4.5441 -1.4569 4.9508 28 8 3.5217 -2.4287 4.6624 29 1 -0.3634 0.4394 -0.9289 30 1 -0.3633 -1.0243 0.0840 31 1 -0.3633 0.5847 0.8451 32 1 0.1913 0.9895 -3.1021 33 1 0.9813 1.5563 -1.6076 34 1 2.9355 2.3138 -2.8386 35 1 1.5066 2.9418 -3.7005 36 1 2.6963 4.9808 -5.2016 37 1 4.0879 0.1452 -3.9853 38 1 3.2954 -0.4209 -5.4770 39 1 2.7762 -1.8010 -3.3849 40 1 1.3474 -1.1729 -4.2469 41 1 1.0755 -2.5563 0.7359 42 1 1.8928 -3.7240 2.7421 43 1 3.0868 0.9969 1.9673 44 1 4.6342 -1.3032 6.0261 45 1 5.4985 -1.7680 4.5261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293284820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:42 Heat of formation + Delta-G solvation = -34.667119 kcal Electronic energy + Delta-G solvation = -28816.831432 eV Core-core repulsion = 24801.611809 eV Total energy + Delta-G solvation = -4015.219624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26834 -40.16267 -38.11344 -36.66047 -36.40082 -34.21121 -33.53050 -31.29161 -30.65099 -30.15360 -28.99403 -27.01051 -25.95865 -24.79805 -23.57676 -23.05124 -22.95721 -21.99433 -20.28211 -18.80672 -18.02378 -17.65367 -17.54559 -16.84502 -16.50229 -15.98252 -15.44464 -15.10223 -14.77289 -14.57092 -14.36048 -13.97463 -13.87759 -13.72275 -13.60377 -13.43901 -13.24452 -13.12003 -13.08651 -12.73281 -12.53721 -12.14074 -11.71843 -11.58018 -11.57547 -11.25966 -11.02080 -10.87184 -10.85773 -10.73232 -10.51925 -10.24598 -10.08082 -9.88171 -9.36271 -8.87425 -8.62110 -8.26495 -8.09319 -6.69694 -5.88426 -3.38070 1.04975 1.17194 2.59603 2.94739 3.26350 3.32305 3.36362 3.38126 3.39570 3.62741 4.38116 4.40625 4.48296 4.50510 4.68462 4.75795 4.96748 5.03264 5.11140 5.21634 5.23158 5.29866 5.33414 5.42129 5.62622 5.70274 5.76586 5.85881 5.91000 5.94672 5.99255 6.00283 6.09166 6.16902 6.18491 6.31340 6.35113 6.41563 6.48717 6.77326 6.91141 7.02095 7.19089 7.45640 7.68212 7.89143 8.35389 8.52991 9.09996 9.70549 10.28995 11.18872 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.002572 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.867751 B =10882.955010 C =11223.530327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 H 0.107 0.893 4 C 0.515 3.485 5 O -0.551 6.551 6 N -0.594 5.594 7 C 0.075 3.925 8 C 0.158 3.842 9 N -0.591 5.591 10 C -0.256 4.256 11 H 0.066 0.934 12 C 0.005 3.995 13 N -0.905 5.905 14 Si 0.907 3.093 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.282 1.282 18 C 0.132 3.868 19 C 0.096 3.904 20 C -0.051 4.051 21 C -0.069 4.069 22 C -0.102 4.102 23 C 0.026 3.974 24 C 0.026 3.974 25 C -0.090 4.090 26 O -0.310 6.310 27 C 0.214 3.786 28 O -0.312 6.312 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.102 0.898 36 H 0.256 0.744 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -9.043 16.691 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 H 0.125 0.875 4 C 0.303 3.697 5 O -0.430 6.430 6 N -0.325 5.325 7 C -0.049 4.049 8 C 0.031 3.969 9 N -0.314 5.314 10 C -0.385 4.385 11 H 0.083 0.917 12 C -0.194 4.194 13 N -0.549 5.549 14 Si 0.737 3.263 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.208 1.208 18 C 0.004 3.996 19 C -0.028 4.028 20 C -0.052 4.052 21 C -0.087 4.087 22 C -0.120 4.120 23 C -0.018 4.018 24 C -0.018 4.018 25 C -0.109 4.109 26 O -0.227 6.227 27 C 0.102 3.898 28 O -0.229 6.229 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.537 -9.353 16.929 19.507 hybrid contribution 0.057 0.589 -0.650 0.879 sum -2.480 -8.764 16.280 18.654 Atomic orbital electron populations 1.21928 0.91677 1.03128 1.03528 1.20212 0.97924 1.00463 0.90418 0.87542 1.20283 0.79730 0.85386 0.84346 1.90657 1.42046 1.24010 1.86238 1.48016 1.58190 1.21038 1.05299 1.22927 0.97415 0.83686 1.00878 1.21296 0.95320 0.94124 0.86175 1.43934 1.66694 1.18065 1.02705 1.19153 1.42922 0.89894 0.86579 0.91662 1.25180 0.99498 0.97022 0.97657 1.69936 1.48534 1.03704 1.32736 0.86305 0.78846 0.77993 0.83190 1.20898 1.21556 1.20814 1.21300 0.93252 0.87498 0.97503 1.22199 0.99415 0.95854 0.85327 1.19057 0.97328 0.94238 0.94596 1.20713 0.99039 0.93570 0.95412 1.20020 0.99472 1.00244 0.92283 1.19790 1.01119 0.92926 0.87954 1.19628 0.98644 0.92438 0.91111 1.19907 0.99468 1.00982 0.90551 1.87348 1.63975 1.30454 1.40916 1.25578 0.90819 0.73513 0.99923 1.87330 1.49786 1.49360 1.36409 0.90670 0.91878 0.91213 0.91696 0.90669 0.95860 0.88025 0.93372 0.95911 0.91602 0.90015 0.91990 0.84568 0.84851 0.84660 0.85370 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.66 37.16 0.32 -1.17 16 2 C -0.07 -0.88 2.05 -92.93 -0.19 -1.07 16 3 H 0.11 1.27 6.97 -51.93 -0.36 0.91 16 4 C 0.52 8.42 6.91 -10.99 -0.08 8.34 16 5 O -0.55 -10.41 14.30 5.56 0.08 -10.34 16 6 N -0.59 -10.15 2.94 -172.22 -0.51 -10.65 16 7 C 0.08 1.25 5.13 -3.37 -0.02 1.24 16 8 C 0.16 3.44 5.48 -3.37 -0.02 3.42 16 9 N -0.59 -14.06 2.96 -171.76 -0.51 -14.57 16 10 C -0.26 -6.66 9.58 -15.06 -0.14 -6.81 16 11 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 12 C 0.01 0.14 5.04 -17.43 -0.09 0.05 16 13 N -0.91 -24.92 11.05 55.49 0.61 -24.30 16 14 Si 0.91 20.75 29.57 -169.99 -5.03 15.72 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.13 2.71 6.67 -3.60 -0.02 2.68 16 19 C 0.10 1.71 6.60 -3.59 -0.02 1.69 16 20 C -0.05 -0.67 4.46 -104.62 -0.47 -1.14 16 21 C -0.07 -0.87 7.80 -39.58 -0.31 -1.18 16 22 C -0.10 -1.23 10.06 -39.47 -0.40 -1.63 16 23 C 0.03 0.34 7.15 -39.09 -0.28 0.06 16 24 C 0.03 0.35 7.15 -39.09 -0.28 0.07 16 25 C -0.09 -1.17 9.68 -39.47 -0.38 -1.55 16 26 O -0.31 -3.87 11.40 -45.69 -0.52 -4.39 16 27 C 0.21 1.97 8.89 101.05 0.90 2.86 16 28 O -0.31 -3.76 11.40 -45.71 -0.52 -4.29 16 29 H 0.07 0.78 5.79 -51.93 -0.30 0.48 16 30 H 0.06 0.63 7.23 -51.93 -0.38 0.25 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.03 4.88 -51.93 -0.25 0.78 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 2.46 6.03 -51.93 -0.31 2.14 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.30 7.94 -51.93 -0.41 0.88 16 39 H 0.08 1.43 6.99 -51.93 -0.36 1.07 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.14 1.63 7.33 -52.48 -0.38 1.25 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.14 1.55 7.94 -52.49 -0.42 1.13 16 44 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -31.52 358.56 -8.57 -40.09 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.11 Total: 1.44 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.48 Total: 5.86 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.40 Total: -49.52 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.96 Total: -19.01 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.52 -8.57 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293284820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.426 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds