Wall clock time and date at job start Tue Mar 31 2020 17:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46674 * 2 1 4 4 C 1.50694 * 109.47132 * 240.00333 * 2 1 3 5 5 O 1.21282 * 119.99746 * 246.13459 * 4 2 1 6 6 N 1.34776 * 120.00457 * 66.13213 * 4 2 1 7 7 C 1.46966 * 120.59179 * 3.27291 * 6 4 2 8 8 C 1.53811 * 108.39628 * 124.75614 * 7 6 4 9 9 N 1.46963 * 108.57756 * 49.64180 * 8 7 6 10 10 C 1.36937 * 120.59302 * 124.66839 * 9 8 7 11 11 H 1.08005 * 120.00062 * 211.38562 * 10 9 8 12 12 C 1.38813 * 120.00366 * 31.38671 * 10 9 8 13 13 N 1.31616 * 119.99667 * 11.22470 * 12 10 9 14 14 Si 1.86796 * 120.00119 * 191.22454 * 12 10 9 15 15 H 1.48495 * 109.47282 * 60.00155 * 14 12 10 16 16 H 1.48509 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47291 * 299.99641 * 14 12 10 18 18 C 1.46962 * 118.81386 * 304.64095 * 9 8 7 19 19 C 1.46963 * 120.59734 * 183.55587 * 6 4 2 20 20 C 1.50697 * 109.47188 * 119.99850 * 2 1 3 21 21 C 1.38251 * 119.93030 * 59.97971 * 20 2 1 22 22 C 1.38239 * 120.14688 * 179.97438 * 21 20 2 23 23 C 1.38541 * 120.02739 * 0.14056 * 22 21 20 24 24 C 1.39270 * 119.82769 * 359.88421 * 23 22 21 25 25 C 1.38237 * 119.93125 * 239.99837 * 20 2 1 26 26 O 1.36501 * 108.63938 * 179.97438 * 24 23 22 27 27 C 1.43986 * 105.48305 * 17.28599 * 26 24 23 28 28 O 1.36507 * 131.53376 * 179.88644 * 23 22 21 29 29 H 1.08994 * 109.47562 * 64.68298 * 1 2 3 30 30 H 1.09001 * 109.46782 * 184.68756 * 1 2 3 31 31 H 1.08999 * 109.47086 * 304.67650 * 1 2 3 32 32 H 1.08995 * 109.61552 * 244.54173 * 7 6 4 33 33 H 1.09002 * 109.60971 * 5.05508 * 7 6 4 34 34 H 1.09001 * 109.74718 * 289.84911 * 8 7 6 35 35 H 1.09003 * 109.53135 * 169.30717 * 8 7 6 36 36 H 0.97006 * 119.99938 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.61227 * 295.49037 * 18 9 8 38 38 H 1.08994 * 109.75197 * 175.05584 * 18 9 8 39 39 H 1.08996 * 109.60754 * 354.94787 * 19 6 4 40 40 H 1.08999 * 109.61370 * 115.46205 * 19 6 4 41 41 H 1.08009 * 119.92453 * 359.97438 * 21 20 2 42 42 H 1.08002 * 119.98288 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.98200 * 0.02562 * 25 20 2 44 44 H 1.08999 * 110.57262 * 214.31378 * 27 26 24 45 45 H 1.09003 * 110.57361 * 91.44093 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.6351 -1.7572 -1.1226 6 7 1.8118 -0.1823 -2.4507 7 6 1.1461 1.1202 -2.5929 8 6 2.0558 2.0423 -3.4223 9 7 2.4711 1.3231 -4.6348 10 6 2.2469 1.8596 -5.8745 11 1 2.0642 1.2111 -6.7186 12 6 2.2545 3.2370 -6.0465 13 7 2.6907 4.0182 -5.0813 14 14 1.6456 3.9817 -7.6477 15 1 0.2264 3.6013 -7.8625 16 1 1.7572 5.4611 -7.5796 17 1 2.4699 3.4751 -8.7743 18 6 3.1317 0.0180 -4.4929 19 6 2.2270 -0.9016 -3.6632 20 6 2.0324 -0.7104 1.2305 21 6 1.6972 -2.0338 1.4480 22 6 2.1560 -2.6900 2.5750 23 6 2.9511 -2.0210 3.4912 24 6 3.2884 -0.6876 3.2723 25 6 2.8271 -0.0372 2.1394 26 8 4.0698 -0.2597 4.3066 27 6 4.5441 -1.4569 4.9508 28 8 3.5217 -2.4287 4.6624 29 1 -0.3634 0.4394 -0.9289 30 1 -0.3633 -1.0243 0.0840 31 1 -0.3633 0.5847 0.8451 32 1 0.1913 0.9895 -3.1021 33 1 0.9813 1.5563 -1.6076 34 1 2.9355 2.3138 -2.8386 35 1 1.5066 2.9418 -3.7005 36 1 2.6963 4.9808 -5.2016 37 1 4.0879 0.1452 -3.9853 38 1 3.2954 -0.4209 -5.4770 39 1 2.7762 -1.8010 -3.3849 40 1 1.3474 -1.1729 -4.2469 41 1 1.0755 -2.5563 0.7359 42 1 1.8928 -3.7240 2.7421 43 1 3.0868 0.9969 1.9673 44 1 4.6342 -1.3032 6.0261 45 1 5.4985 -1.7680 4.5261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293284820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:41 Heat of formation + Delta-G solvation = -53.354515 kcal Electronic energy + Delta-G solvation = -28817.641779 eV Core-core repulsion = 24801.611809 eV Total energy + Delta-G solvation = -4016.029970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.14594 -41.42032 -39.24810 -38.14982 -37.28821 -35.69169 -34.79980 -33.02008 -31.80029 -31.53893 -29.94817 -28.65677 -26.74231 -26.07918 -25.00866 -24.48763 -23.98205 -23.22401 -21.71765 -20.21860 -18.99575 -18.85601 -18.47107 -18.12372 -17.71480 -17.18637 -16.87397 -16.48196 -16.26912 -15.51815 -15.46911 -15.37933 -15.26414 -15.12253 -14.87813 -14.76441 -14.56371 -14.23052 -14.00615 -13.82989 -13.64329 -13.28648 -13.13431 -12.97173 -12.65380 -12.63098 -12.56081 -12.44610 -12.21809 -11.99242 -11.87277 -11.84729 -11.69088 -11.63263 -10.69576 -10.53919 -9.84994 -9.76084 -9.02724 -8.58586 -7.86010 -5.39504 0.08524 0.22279 1.51300 1.51639 1.58816 1.66399 1.72538 2.10515 2.50736 2.52258 2.60672 3.29446 3.46086 3.50401 3.61880 3.64596 3.81878 3.98919 4.06441 4.14247 4.26107 4.27455 4.29236 4.32214 4.38771 4.42420 4.54956 4.60025 4.68954 4.78673 4.84692 4.86136 4.91617 5.01603 5.05688 5.10291 5.19775 5.25412 5.33964 5.39236 5.53283 5.59217 5.63479 5.70585 6.11311 6.39994 6.54474 7.14343 7.21089 7.80413 8.34868 9.18056 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.002572 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.867751 B =10882.955010 C =11223.530327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 H 0.116 0.884 4 C 0.515 3.485 5 O -0.577 6.577 6 N -0.599 5.599 7 C 0.093 3.907 8 C 0.161 3.839 9 N -0.609 5.609 10 C -0.265 4.265 11 H 0.067 0.933 12 C -0.044 4.044 13 N -0.934 5.934 14 Si 0.970 3.030 15 H -0.274 1.274 16 H -0.295 1.295 17 H -0.280 1.280 18 C 0.132 3.868 19 C 0.107 3.893 20 C -0.060 4.060 21 C -0.074 4.074 22 C -0.104 4.104 23 C 0.015 3.985 24 C 0.012 3.988 25 C -0.100 4.100 26 O -0.325 6.325 27 C 0.204 3.796 28 O -0.323 6.323 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.110 0.890 34 H -0.003 1.003 35 H 0.077 0.923 36 H 0.252 0.748 37 H 0.004 0.996 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.165 0.835 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -9.692 17.523 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 H 0.134 0.866 4 C 0.304 3.696 5 O -0.457 6.457 6 N -0.331 5.331 7 C -0.030 4.030 8 C 0.035 3.965 9 N -0.333 5.333 10 C -0.395 4.395 11 H 0.085 0.915 12 C -0.240 4.240 13 N -0.579 5.579 14 Si 0.798 3.202 15 H -0.200 1.200 16 H -0.221 1.221 17 H -0.206 1.206 18 C 0.005 3.995 19 C -0.017 4.017 20 C -0.061 4.061 21 C -0.092 4.092 22 C -0.123 4.123 23 C -0.029 4.029 24 C -0.033 4.033 25 C -0.118 4.118 26 O -0.242 6.242 27 C 0.094 3.906 28 O -0.240 6.240 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.015 0.985 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.022 0.978 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.163 0.837 44 H 0.182 0.818 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.693 -10.027 17.779 20.743 hybrid contribution 0.532 0.729 -0.850 1.240 sum -3.162 -9.298 16.929 19.571 Atomic orbital electron populations 1.21946 0.89474 1.03930 1.04504 1.20236 0.99618 1.00199 0.88330 0.86622 1.20895 0.78765 0.85092 0.84823 1.90644 1.43093 1.25369 1.86612 1.48070 1.58445 1.21058 1.05496 1.22711 0.96019 0.82532 1.01786 1.21150 0.94865 0.94509 0.85965 1.44208 1.67384 1.18975 1.02685 1.19461 1.42227 0.90238 0.87616 0.91519 1.25884 1.00116 0.97443 1.00538 1.70097 1.49923 1.03498 1.34400 0.85316 0.78584 0.76642 0.79675 1.19978 1.22090 1.20611 1.21354 0.92975 0.86913 0.98237 1.21982 0.99176 0.95095 0.85476 1.19132 0.97665 0.94560 0.94694 1.20841 0.99135 0.93569 0.95654 1.20265 0.98960 1.01158 0.91909 1.20015 1.01382 0.93059 0.88459 1.19834 0.99059 0.92821 0.91540 1.20080 0.99497 1.01599 0.90669 1.87316 1.64026 1.32027 1.40815 1.26090 0.90508 0.72097 1.01927 1.87303 1.50469 1.50227 1.35960 0.90511 0.91470 0.89133 0.90767 0.87248 0.98497 0.90494 0.93885 0.97752 0.91149 0.89678 0.90927 0.84070 0.82962 0.83718 0.81822 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.66 71.98 0.62 -1.87 16 2 C -0.06 -1.47 2.05 -12.29 -0.03 -1.50 16 3 H 0.12 2.51 6.97 -2.39 -0.02 2.49 16 4 C 0.52 16.04 6.91 87.66 0.61 16.65 16 5 O -0.58 -21.19 14.30 -3.04 -0.04 -21.24 16 6 N -0.60 -19.64 2.94 -817.16 -2.40 -22.04 16 7 C 0.09 2.97 5.13 86.56 0.44 3.41 16 8 C 0.16 7.10 5.48 86.56 0.47 7.57 16 9 N -0.61 -29.15 2.96 -697.34 -2.06 -31.21 16 10 C -0.27 -13.86 9.58 84.03 0.81 -13.05 16 11 H 0.07 3.39 7.85 -2.91 -0.02 3.37 16 12 C -0.04 -2.33 5.04 84.86 0.43 -1.90 16 13 N -0.93 -52.32 11.05 21.65 0.24 -52.08 16 14 Si 0.97 42.74 29.57 68.60 2.03 44.77 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 C 0.13 5.44 6.67 86.42 0.58 6.01 16 19 C 0.11 3.70 6.60 86.42 0.57 4.27 16 20 C -0.06 -1.47 4.46 -19.86 -0.09 -1.56 16 21 C -0.07 -1.76 7.80 22.27 0.17 -1.58 16 22 C -0.10 -2.40 10.06 22.34 0.22 -2.17 16 23 C 0.02 0.38 7.15 22.59 0.16 0.54 16 24 C 0.01 0.30 7.15 22.59 0.16 0.46 16 25 C -0.10 -2.48 9.68 22.34 0.22 -2.27 16 26 O -0.32 -7.75 11.40 -76.07 -0.87 -8.61 16 27 C 0.20 3.42 8.89 113.37 1.01 4.42 16 28 O -0.32 -7.34 11.40 -76.13 -0.87 -8.21 16 29 H 0.08 1.34 5.79 -2.39 -0.01 1.33 16 30 H 0.07 1.15 7.23 -2.39 -0.02 1.13 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.11 2.73 4.88 -2.39 -0.01 2.72 16 34 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.08 3.78 6.03 -2.39 -0.01 3.77 16 36 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.07 2.78 7.94 -2.39 -0.02 2.76 16 39 H 0.08 2.91 6.99 -2.39 -0.02 2.89 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.14 3.15 7.33 -2.91 -0.02 3.13 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.15 3.17 7.94 -2.91 -0.02 3.15 16 44 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -68.31 358.56 3.39 -64.91 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.01 Total: 16.29 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.36 Total: 17.44 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.23 Total: -105.34 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.78 Total: -38.06 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -68.31 3.39 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293284820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.557 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds