Wall clock time and date at job start Tue Mar 31 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46882 * 2 1 4 4 C 1.50703 * 109.46826 * 119.99836 * 2 1 3 5 5 H 1.07999 * 119.99891 * 119.99923 * 4 2 1 6 6 C 1.37880 * 120.00158 * 300.00294 * 4 2 1 7 7 N 1.31513 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99736 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47032 * 90.00536 * 8 6 4 10 10 H 1.48501 * 109.46795 * 210.00141 * 8 6 4 11 11 H 1.48499 * 109.47391 * 330.00446 * 8 6 4 12 12 N 1.46494 * 109.46882 * 239.99872 * 2 1 3 13 13 C 1.34768 * 120.00110 * 85.00572 * 12 2 1 14 14 O 1.21357 * 120.00044 * 359.97438 * 13 12 2 15 15 C 1.49360 * 119.99867 * 179.97438 * 13 12 2 16 16 O 1.21366 * 120.00319 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99872 * 179.97438 * 15 13 12 18 18 C 1.39723 * 120.00417 * 185.27824 * 17 15 13 19 19 C 1.38931 * 120.07240 * 33.33200 * 18 17 15 20 20 C 1.38096 * 119.92578 * 179.97438 * 19 18 17 21 21 C 1.38296 * 120.07269 * 0.24722 * 20 19 18 22 22 C 1.50701 * 119.92373 * 179.74731 * 21 20 19 23 23 H 1.09007 * 110.45487 * 357.40070 * 22 21 20 24 24 C 1.54504 * 110.51103 * 120.00644 * 22 21 20 25 25 C 1.54479 * 104.06288 * 118.64648 * 24 22 21 26 26 O 1.44426 * 104.80384 * 23.97744 * 25 24 22 27 27 C 1.44419 * 105.27395 * 319.49053 * 26 25 24 28 28 C 1.38293 * 120.15001 * 359.50166 * 21 20 19 29 29 C 1.38093 * 120.07652 * 0.50060 * 28 21 20 30 30 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47200 * 300.00499 * 1 2 3 32 32 H 1.08999 * 109.46706 * 59.99816 * 1 2 3 33 33 H 0.97008 * 119.99565 * 179.97438 * 7 6 4 34 34 H 0.97004 * 119.99495 * 264.99625 * 12 2 1 35 35 H 0.97000 * 120.00196 * 5.27603 * 17 15 13 36 36 H 1.08007 * 120.04279 * 0.02562 * 19 18 17 37 37 H 1.07993 * 119.96536 * 179.97438 * 20 19 18 38 38 H 1.09001 * 110.51376 * 237.29305 * 24 22 21 39 39 H 1.09005 * 110.51343 * 359.86418 * 24 22 21 40 40 H 1.09002 * 110.37200 * 142.80999 * 25 24 22 41 41 H 1.09003 * 110.37269 * 265.14383 * 25 24 22 42 42 H 1.09006 * 110.37282 * 281.67817 * 27 26 25 43 43 H 1.09006 * 110.37259 * 159.34347 * 27 26 25 44 44 H 1.08006 * 119.96038 * 180.25397 * 28 21 20 45 45 H 1.08011 * 120.03513 * 179.77062 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8745 2.6993 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8582 1.1591 -2.4117 15 6 2.6455 -0.7224 -3.5764 16 8 2.9340 -1.9000 -3.5219 17 7 2.7738 -0.0502 -4.7375 18 6 3.1337 -0.7313 -5.9031 19 6 2.7143 -2.0408 -6.1019 20 6 3.0714 -2.7110 -7.2553 21 6 3.8499 -2.0819 -8.2096 22 6 4.2424 -2.8184 -9.4644 23 1 3.8701 -3.8426 -9.4372 24 6 3.7097 -2.0816 -10.7136 25 6 4.9850 -1.7069 -11.5007 26 8 5.9796 -2.6602 -11.0673 27 6 5.7766 -2.8017 -9.6445 28 6 4.2648 -0.7768 -8.0172 29 6 3.9114 -0.1007 -6.8661 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.9038 -0.5274 4.4377 34 1 2.2490 -1.6318 -1.1525 35 1 2.6162 0.9066 -4.7640 36 1 2.1089 -2.5339 -5.3556 37 1 2.7460 -3.7291 -7.4103 38 1 3.0760 -2.7421 -11.3054 39 1 3.1604 -1.1859 -10.4235 40 1 4.8108 -1.8010 -12.5726 41 1 5.2988 -0.6925 -11.2540 42 1 6.2118 -1.9552 -9.1131 43 1 6.2104 -3.7368 -9.2904 44 1 4.8694 -0.2870 -8.7664 45 1 4.2390 0.9173 -6.7149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294633209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:13 Heat of formation + Delta-G solvation = -82.785492 kcal Electronic energy + Delta-G solvation = -27355.130954 eV Core-core repulsion = 23337.824761 eV Total energy + Delta-G solvation = -4017.306193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05682 -40.22783 -38.99671 -37.97318 -35.69684 -34.98728 -32.91234 -32.45953 -31.24282 -30.23281 -30.06419 -28.32946 -25.44422 -25.02888 -23.71317 -23.02397 -22.52045 -21.17499 -20.38496 -19.83077 -18.85670 -17.72276 -16.90302 -16.82948 -16.61000 -15.97930 -15.78404 -15.65557 -15.39643 -15.22203 -14.63187 -14.48638 -14.03555 -13.85478 -13.67670 -13.47274 -13.31710 -13.19947 -12.95882 -12.81681 -12.31199 -12.07861 -11.97541 -11.82194 -11.68422 -11.63646 -11.42839 -11.18195 -11.03456 -10.88939 -10.41452 -10.28592 -10.19501 -9.78006 -9.36253 -9.30928 -9.14023 -8.87135 -8.44212 -8.26355 -6.27623 -4.31873 0.86004 1.15360 1.71481 2.49306 3.17241 3.29775 3.31837 3.33540 3.54000 3.61177 3.89082 4.23033 4.23954 4.29020 4.49073 4.60609 4.66293 4.70367 4.82502 4.85471 4.94556 5.05852 5.12419 5.21851 5.28475 5.35269 5.38776 5.42660 5.53461 5.61327 5.75997 5.97316 6.05873 6.17137 6.21109 6.23015 6.33481 6.37406 6.39929 6.66484 6.72849 6.86383 7.04554 7.07470 7.33982 7.65544 7.97090 8.33056 8.44463 8.72286 9.30491 10.84238 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038300 B = 0.001941 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.894245 B =14425.467768 C =14674.087029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.234 3.766 3 H 0.054 0.946 4 C -0.540 4.540 5 H 0.083 0.917 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.262 1.262 12 N -0.660 5.660 13 C 0.497 3.503 14 O -0.536 6.536 15 C 0.509 3.491 16 O -0.499 6.499 17 N -0.652 5.652 18 C 0.150 3.850 19 C -0.117 4.117 20 C -0.092 4.092 21 C -0.097 4.097 22 C -0.079 4.079 23 H 0.092 0.908 24 C -0.148 4.148 25 C 0.043 3.957 26 O -0.376 6.376 27 C 0.050 3.950 28 C -0.096 4.096 29 C -0.140 4.140 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.269 0.731 34 H 0.409 0.591 35 H 0.423 0.577 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -0.929 -28.108 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.101 0.899 6 C -0.124 4.124 7 N -0.524 5.524 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.309 5.309 13 C 0.276 3.724 14 O -0.415 6.415 15 C 0.292 3.708 16 O -0.372 6.372 17 N -0.299 5.299 18 C 0.056 3.944 19 C -0.137 4.137 20 C -0.111 4.111 21 C -0.097 4.097 22 C -0.098 4.098 23 H 0.110 0.890 24 C -0.186 4.186 25 C -0.034 4.034 26 O -0.295 6.295 27 C -0.026 4.026 28 C -0.115 4.115 29 C -0.160 4.160 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.245 0.755 35 H 0.261 0.739 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.142 0.858 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.639 -1.052 -27.895 28.039 hybrid contribution -0.757 0.894 0.520 1.282 sum 1.882 -0.158 -27.375 27.440 Atomic orbital electron populations 1.22470 0.98662 1.01328 0.99646 1.19326 0.90582 0.94801 0.82116 0.92798 1.20987 1.33755 1.14760 0.88254 0.89858 1.24825 0.95447 0.96734 0.95431 1.69863 1.44478 1.39943 0.98091 0.86880 0.80570 0.83471 0.77601 1.20164 1.21970 1.18656 1.46138 1.61344 1.14829 1.08594 1.19694 0.80946 0.87222 0.84571 1.90729 1.50838 1.15202 1.84707 1.20809 0.78093 0.87254 0.84686 1.90761 1.46053 1.15573 1.84816 1.43247 1.67199 1.13242 1.06203 1.17789 0.96762 0.93247 0.86645 1.21199 1.00658 0.93917 0.97958 1.20923 0.97542 0.99764 0.92823 1.19624 0.99900 0.94468 0.95752 1.21482 0.96199 0.99839 0.92245 0.89007 1.23075 0.98431 1.01365 0.95741 1.23452 0.87192 0.92940 0.99776 1.89137 1.55402 1.62901 1.22065 1.23610 0.94003 1.02657 0.82369 1.20705 0.99832 0.93968 0.96969 1.20897 0.99127 1.01096 0.94873 0.92423 0.92990 0.94377 0.92121 0.75530 0.73897 0.84484 0.85559 0.90377 0.89929 0.89057 0.92215 0.91611 0.88762 0.85798 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.96 37.16 0.33 -3.16 16 2 C 0.23 5.42 2.15 -69.08 -0.15 5.27 16 3 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16 4 C -0.54 -14.34 9.31 -34.44 -0.32 -14.66 16 5 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 8 Si 0.89 21.02 24.37 -169.99 -4.14 16.88 16 9 H -0.27 -6.31 6.87 56.52 0.39 -5.92 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 12 N -0.66 -13.18 5.06 -55.40 -0.28 -13.46 16 13 C 0.50 9.13 7.85 -11.63 -0.09 9.04 16 14 O -0.54 -10.73 16.15 5.49 0.09 -10.65 16 15 C 0.51 8.00 7.62 -11.63 -0.09 7.91 16 16 O -0.50 -8.55 14.16 5.48 0.08 -8.47 16 17 N -0.65 -8.25 5.32 -10.30 -0.05 -8.31 16 18 C 0.15 1.75 6.28 -83.75 -0.53 1.23 16 19 C -0.12 -1.39 8.65 -39.38 -0.34 -1.73 16 20 C -0.09 -0.88 9.67 -39.61 -0.38 -1.27 16 21 C -0.10 -0.81 4.78 -104.58 -0.50 -1.31 16 22 C -0.08 -0.54 3.34 -90.21 -0.30 -0.85 16 23 H 0.09 0.59 7.93 -51.93 -0.41 0.17 16 24 C -0.15 -0.87 6.52 -25.17 -0.16 -1.03 16 25 C 0.04 0.27 7.63 37.93 0.29 0.56 16 26 O -0.38 -3.35 11.65 -35.23 -0.41 -3.76 16 27 C 0.05 0.37 7.07 37.93 0.27 0.64 16 28 C -0.10 -0.79 8.17 -39.61 -0.32 -1.11 16 29 C -0.14 -1.31 9.96 -39.38 -0.39 -1.70 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 34 H 0.41 7.75 8.01 -40.82 -0.33 7.42 16 35 H 0.42 4.65 8.30 -40.82 -0.34 4.31 16 36 H 0.14 1.80 6.42 -52.48 -0.34 1.46 16 37 H 0.13 0.99 7.97 -52.49 -0.42 0.57 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.47 7.40 -51.93 -0.38 0.08 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.48 6.75 -51.93 -0.35 0.13 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.12 0.79 7.60 -52.48 -0.40 0.39 16 45 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -31.13 368.09 -7.23 -38.35 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.04 Total: 9.00 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.79 Total: -0.06 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.44 Total: -46.85 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.24 Total: -22.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.13 -7.23 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294633209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.431 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds