Wall clock time and date at job start Tue Mar 31 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46882 * 2 1 4 4 C 1.50703 * 109.46826 * 119.99836 * 2 1 3 5 5 H 1.07999 * 119.99891 * 119.99923 * 4 2 1 6 6 C 1.37880 * 120.00158 * 300.00294 * 4 2 1 7 7 N 1.31513 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99736 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47032 * 90.00536 * 8 6 4 10 10 H 1.48501 * 109.46795 * 210.00141 * 8 6 4 11 11 H 1.48499 * 109.47391 * 330.00446 * 8 6 4 12 12 N 1.46494 * 109.46882 * 239.99872 * 2 1 3 13 13 C 1.34768 * 120.00110 * 85.00572 * 12 2 1 14 14 O 1.21357 * 120.00044 * 359.97438 * 13 12 2 15 15 C 1.49360 * 119.99867 * 179.97438 * 13 12 2 16 16 O 1.21366 * 120.00319 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99872 * 179.97438 * 15 13 12 18 18 C 1.39723 * 120.00417 * 185.27824 * 17 15 13 19 19 C 1.38931 * 120.07240 * 33.33200 * 18 17 15 20 20 C 1.38096 * 119.92578 * 179.97438 * 19 18 17 21 21 C 1.38296 * 120.07269 * 0.24722 * 20 19 18 22 22 C 1.50701 * 119.92373 * 179.74731 * 21 20 19 23 23 H 1.09007 * 110.45487 * 357.40070 * 22 21 20 24 24 C 1.54504 * 110.51103 * 120.00644 * 22 21 20 25 25 C 1.54479 * 104.06288 * 118.64648 * 24 22 21 26 26 O 1.44426 * 104.80384 * 23.97744 * 25 24 22 27 27 C 1.44419 * 105.27395 * 319.49053 * 26 25 24 28 28 C 1.38293 * 120.15001 * 359.50166 * 21 20 19 29 29 C 1.38093 * 120.07652 * 0.50060 * 28 21 20 30 30 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47200 * 300.00499 * 1 2 3 32 32 H 1.08999 * 109.46706 * 59.99816 * 1 2 3 33 33 H 0.97008 * 119.99565 * 179.97438 * 7 6 4 34 34 H 0.97004 * 119.99495 * 264.99625 * 12 2 1 35 35 H 0.97000 * 120.00196 * 5.27603 * 17 15 13 36 36 H 1.08007 * 120.04279 * 0.02562 * 19 18 17 37 37 H 1.07993 * 119.96536 * 179.97438 * 20 19 18 38 38 H 1.09001 * 110.51376 * 237.29305 * 24 22 21 39 39 H 1.09005 * 110.51343 * 359.86418 * 24 22 21 40 40 H 1.09002 * 110.37200 * 142.80999 * 25 24 22 41 41 H 1.09003 * 110.37269 * 265.14383 * 25 24 22 42 42 H 1.09006 * 110.37282 * 281.67817 * 27 26 25 43 43 H 1.09006 * 110.37259 * 159.34347 * 27 26 25 44 44 H 1.08006 * 119.96038 * 180.25397 * 28 21 20 45 45 H 1.08011 * 120.03513 * 179.77062 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8745 2.6993 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8582 1.1591 -2.4117 15 6 2.6455 -0.7224 -3.5764 16 8 2.9340 -1.9000 -3.5219 17 7 2.7738 -0.0502 -4.7375 18 6 3.1337 -0.7313 -5.9031 19 6 2.7143 -2.0408 -6.1019 20 6 3.0714 -2.7110 -7.2553 21 6 3.8499 -2.0819 -8.2096 22 6 4.2424 -2.8184 -9.4644 23 1 3.8701 -3.8426 -9.4372 24 6 3.7097 -2.0816 -10.7136 25 6 4.9850 -1.7069 -11.5007 26 8 5.9796 -2.6602 -11.0673 27 6 5.7766 -2.8017 -9.6445 28 6 4.2648 -0.7768 -8.0172 29 6 3.9114 -0.1007 -6.8661 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.9038 -0.5274 4.4377 34 1 2.2490 -1.6318 -1.1525 35 1 2.6162 0.9066 -4.7640 36 1 2.1089 -2.5339 -5.3556 37 1 2.7460 -3.7291 -7.4103 38 1 3.0760 -2.7421 -11.3054 39 1 3.1604 -1.1859 -10.4235 40 1 4.8108 -1.8010 -12.5726 41 1 5.2988 -0.6925 -11.2540 42 1 6.2118 -1.9552 -9.1131 43 1 6.2104 -3.7368 -9.2904 44 1 4.8694 -0.2870 -8.7664 45 1 4.2390 0.9173 -6.7149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294633209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:12 Heat of formation + Delta-G solvation = -105.063474 kcal Electronic energy + Delta-G solvation = -27356.096999 eV Core-core repulsion = 23337.824761 eV Total energy + Delta-G solvation = -4018.272239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.17898 -41.04039 -40.12201 -39.02022 -37.20919 -36.20545 -34.45343 -33.60380 -32.00997 -31.90645 -30.72567 -29.08332 -27.29593 -26.35960 -24.53713 -23.68119 -23.37984 -22.48329 -21.46325 -21.03612 -20.21820 -18.78672 -18.47248 -17.67931 -17.45961 -17.30348 -17.14091 -16.93360 -16.25524 -16.03132 -15.85789 -15.60395 -15.18095 -15.07634 -14.80007 -14.66066 -14.41469 -14.16496 -14.07701 -13.97391 -13.75253 -13.41114 -13.28669 -12.91074 -12.76304 -12.65053 -12.42714 -12.25724 -12.16529 -11.99482 -11.59587 -11.54053 -11.35295 -11.30778 -10.90856 -10.75780 -10.68359 -10.15245 -9.92388 -9.11783 -8.39330 -6.47912 -0.11768 0.40635 0.55308 1.24249 1.29674 1.37223 1.46436 2.04726 2.25536 2.61748 2.72715 2.96042 3.05900 3.36144 3.67460 3.75481 3.91973 3.98741 4.00682 4.18602 4.34451 4.35095 4.37797 4.43112 4.47487 4.50113 4.57724 4.61319 4.81402 4.88440 4.90336 4.91602 5.01318 5.09942 5.12223 5.16117 5.19010 5.25351 5.31366 5.39128 5.43532 5.62376 5.82651 5.86184 5.98353 6.09093 6.45253 6.54453 6.68749 6.91004 7.19464 8.75911 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038300 B = 0.001941 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.894245 B =14425.467768 C =14674.087029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.240 3.760 3 H 0.040 0.960 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.028 3.972 7 N -0.932 5.932 8 Si 0.943 3.057 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.253 1.253 12 N -0.667 5.667 13 C 0.501 3.499 14 O -0.550 6.550 15 C 0.516 3.484 16 O -0.518 6.518 17 N -0.634 5.634 18 C 0.122 3.878 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.086 4.086 22 C -0.077 4.077 23 H 0.097 0.903 24 C -0.144 4.144 25 C 0.038 3.962 26 O -0.399 6.399 27 C 0.048 3.952 28 C -0.093 4.093 29 C -0.133 4.133 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.272 0.728 34 H 0.412 0.588 35 H 0.431 0.569 36 H 0.117 0.883 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.149 0.851 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 0.265 -30.814 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.136 3.864 3 H 0.058 0.942 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.571 5.571 8 Si 0.769 3.231 9 H -0.183 1.183 10 H -0.219 1.219 11 H -0.178 1.178 12 N -0.316 5.316 13 C 0.281 3.719 14 O -0.429 6.429 15 C 0.298 3.702 16 O -0.393 6.393 17 N -0.281 5.281 18 C 0.028 3.972 19 C -0.155 4.155 20 C -0.116 4.116 21 C -0.087 4.087 22 C -0.096 4.096 23 H 0.115 0.885 24 C -0.181 4.181 25 C -0.038 4.038 26 O -0.319 6.319 27 C -0.028 4.028 28 C -0.112 4.112 29 C -0.153 4.153 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.248 0.752 35 H 0.270 0.730 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.166 0.834 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.225 0.153 -30.663 30.744 hybrid contribution -0.523 0.460 1.196 1.384 sum 1.702 0.613 -29.467 29.523 Atomic orbital electron populations 1.22371 0.96911 1.02066 1.00241 1.19032 0.91848 0.93614 0.81926 0.94221 1.21190 1.32938 1.13832 0.89976 0.92967 1.25632 0.96833 0.99702 0.95073 1.69988 1.46360 1.41948 0.98759 0.85940 0.79589 0.79876 0.77647 1.18336 1.21946 1.17760 1.45976 1.62117 1.14988 1.08549 1.20053 0.80023 0.86954 0.84866 1.90711 1.51246 1.15869 1.85120 1.20170 0.78528 0.86840 0.84631 1.90764 1.47389 1.16131 1.84991 1.43072 1.65975 1.13487 1.05598 1.17991 0.98747 0.93602 0.86812 1.21182 1.01386 0.94357 0.98571 1.21101 0.97714 1.00455 0.92353 1.19824 0.98539 0.94583 0.95729 1.21493 0.96023 1.00165 0.91916 0.88468 1.23058 0.98416 1.01569 0.95101 1.23631 0.86692 0.92951 1.00534 1.89120 1.56376 1.63728 1.22649 1.23653 0.94235 1.02927 0.82017 1.21007 0.99358 0.93843 0.96942 1.21141 0.97940 1.01953 0.94281 0.91713 0.93352 0.92665 0.91904 0.75154 0.72959 0.86459 0.84185 0.89665 0.89425 0.87959 0.91202 0.91396 0.88599 0.83369 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.53 8.96 71.98 0.65 -5.88 16 2 C 0.24 11.04 2.15 44.25 0.10 11.13 16 3 H 0.04 1.96 6.63 -2.39 -0.02 1.94 16 4 C -0.54 -29.36 9.31 25.60 0.24 -29.12 16 5 H 0.05 3.08 7.98 -2.91 -0.02 3.06 16 6 C 0.03 1.54 5.45 84.66 0.46 2.00 16 7 N -0.93 -55.50 13.96 21.45 0.30 -55.20 16 8 Si 0.94 42.97 24.37 68.60 1.67 44.64 16 9 H -0.26 -10.99 6.87 99.48 0.68 -10.30 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 12 N -0.67 -26.80 5.06 -447.54 -2.27 -29.06 16 13 C 0.50 18.25 7.85 87.24 0.68 18.94 16 14 O -0.55 -21.53 16.15 -3.27 -0.05 -21.58 16 15 C 0.52 16.12 7.62 87.24 0.67 16.79 16 16 O -0.52 -17.92 14.16 -3.30 -0.05 -17.97 16 17 N -0.63 -15.46 5.32 -304.85 -1.62 -17.08 16 18 C 0.12 2.70 6.28 38.21 0.24 2.94 16 19 C -0.13 -3.13 8.65 22.40 0.19 -2.94 16 20 C -0.10 -1.74 9.67 22.25 0.22 -1.53 16 21 C -0.09 -1.24 4.78 -19.84 -0.09 -1.34 16 22 C -0.08 -0.88 3.34 -10.53 -0.04 -0.91 16 23 H 0.10 1.02 7.93 -2.38 -0.02 1.00 16 24 C -0.14 -1.27 6.52 31.61 0.21 -1.07 16 25 C 0.04 0.37 7.63 72.48 0.55 0.92 16 26 O -0.40 -6.30 11.65 -148.98 -1.74 -8.04 16 27 C 0.05 0.62 7.07 72.48 0.51 1.13 16 28 C -0.09 -1.26 8.17 22.25 0.18 -1.08 16 29 C -0.13 -2.17 9.96 22.40 0.22 -1.95 16 30 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.05 2.03 3.27 -2.39 -0.01 2.02 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 34 H 0.41 16.01 8.01 -92.70 -0.74 15.27 16 35 H 0.43 8.88 8.30 -92.71 -0.77 8.12 16 36 H 0.12 3.16 6.42 -2.91 -0.02 3.14 16 37 H 0.14 2.01 7.97 -2.91 -0.02 1.98 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.71 7.40 -2.38 -0.02 0.69 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.82 6.75 -2.38 -0.02 0.81 16 43 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.15 1.30 7.60 -2.91 -0.02 1.28 16 45 H 0.15 1.77 8.06 -2.90 -0.02 1.75 16 Total: -1.00 -67.24 368.09 0.69 -66.55 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.55 Total: 29.69 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.99 Total: 8.04 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.59 Total: -101.34 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -1.84 Total: -47.59 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.67 Total: 44.64 kcal Total: -67.24 0.69 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294633209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.515 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds