Wall clock time and date at job start Tue Mar 31 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46892 * 2 1 4 4 C 1.50697 * 109.46610 * 240.00177 * 2 1 3 5 5 H 1.07994 * 119.99903 * 245.68896 * 4 2 1 6 6 C 1.37885 * 120.00190 * 65.70306 * 4 2 1 7 7 N 1.31511 * 119.99983 * 197.74711 * 6 4 2 8 8 Si 1.86798 * 120.00005 * 17.73618 * 6 4 2 9 9 H 1.48500 * 109.47277 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.46754 * 60.00540 * 8 6 4 11 11 H 1.48504 * 109.47321 * 300.00891 * 8 6 4 12 12 N 1.46493 * 109.47187 * 120.00243 * 2 1 3 13 13 C 1.34773 * 120.00067 * 274.99968 * 12 2 1 14 14 O 1.21363 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.49361 * 120.00088 * 179.97438 * 13 12 2 16 16 O 1.21375 * 119.99882 * 0.02562 * 15 13 12 17 17 N 1.34773 * 120.00088 * 179.97438 * 15 13 12 18 18 C 1.39725 * 119.99817 * 185.31309 * 17 15 13 19 19 C 1.38926 * 120.07160 * 212.74764 * 18 17 15 20 20 C 1.38096 * 119.92295 * 179.76906 * 19 18 17 21 21 C 1.38299 * 120.07350 * 0.51051 * 20 19 18 22 22 C 1.50703 * 119.92422 * 179.76769 * 21 20 19 23 23 H 1.08997 * 110.80159 * 183.60419 * 22 21 20 24 24 C 1.54809 * 110.90516 * 59.97629 * 22 21 20 25 25 C 1.54108 * 104.18593 * 220.91898 * 24 22 21 26 26 O 1.43743 * 107.29120 * 357.97615 * 25 24 22 27 27 C 1.44380 * 106.97797 * 26.50869 * 26 25 24 28 28 C 1.38288 * 120.15305 * 359.74473 * 21 20 19 29 29 C 1.38102 * 120.07466 * 0.02562 * 28 21 20 30 30 H 1.09003 * 109.46805 * 295.58313 * 1 2 3 31 31 H 1.09000 * 109.47150 * 55.58063 * 1 2 3 32 32 H 1.08997 * 109.47430 * 175.58316 * 1 2 3 33 33 H 0.96998 * 119.99785 * 354.93755 * 7 6 4 34 34 H 0.97002 * 120.00227 * 94.99497 * 12 2 1 35 35 H 0.97009 * 119.99952 * 5.30601 * 17 15 13 36 36 H 1.08008 * 120.04298 * 0.02822 * 19 18 17 37 37 H 1.08002 * 119.96374 * 180.27721 * 20 19 18 38 38 H 1.08998 * 110.49065 * 339.59695 * 24 22 21 39 39 H 1.09002 * 110.49025 * 102.25007 * 24 22 21 40 40 H 1.09008 * 109.87471 * 117.39470 * 25 24 22 41 41 H 1.08993 * 109.87907 * 238.54302 * 25 24 22 42 42 H 1.08997 * 110.61661 * 201.43565 * 27 26 25 43 43 H 1.09001 * 110.61416 * 78.44125 * 27 26 25 44 44 H 1.07998 * 119.96476 * 180.02562 * 28 21 20 45 45 H 1.07998 * 120.03803 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5752 -1.6389 -1.1341 6 6 1.7988 -0.1747 -2.4794 7 7 1.9126 -0.9295 -3.5504 8 14 1.3205 1.6229 -2.6502 9 1 1.1264 1.9493 -4.0858 10 1 2.3980 2.4772 -2.0892 11 1 0.0566 1.8713 -1.9111 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1593 2.4116 15 6 2.6444 -0.7226 3.5767 16 8 2.9331 -1.9003 3.5221 17 7 2.7737 -0.0502 4.7375 18 6 3.3425 -0.6778 5.8488 19 6 2.9117 -0.3518 7.1287 20 6 3.4726 -0.9774 8.2246 21 6 4.4696 -1.9199 8.0496 22 6 5.0830 -2.5967 9.2482 23 1 5.8924 -3.2611 8.9455 24 6 4.0105 -3.3657 10.0574 25 6 4.3717 -3.0817 11.5284 26 8 5.5618 -2.2756 11.5282 27 6 5.5804 -1.5517 10.2791 28 6 4.9044 -2.2429 6.7772 29 6 4.3445 -1.6245 5.6767 30 1 -0.3633 0.4438 0.9270 31 1 -0.3633 0.5809 -0.8477 32 1 -0.3634 -1.0246 -0.0791 33 1 2.2315 -1.8419 -3.4690 34 1 2.2490 -1.6318 1.1525 35 1 2.4719 0.8695 4.8015 36 1 2.1360 0.3871 7.2664 37 1 3.1351 -0.7278 9.2197 38 1 3.0148 -2.9856 9.8289 39 1 4.0690 -4.4341 9.8498 40 1 3.5579 -2.5412 12.0121 41 1 4.5590 -4.0193 12.0517 42 1 6.5927 -1.2271 10.0387 43 1 4.9022 -0.6993 10.3193 44 1 5.6829 -2.9796 6.6441 45 1 4.6843 -1.8776 4.6832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294633211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:17 Heat of formation + Delta-G solvation = -90.950310 kcal Electronic energy + Delta-G solvation = -27306.316894 eV Core-core repulsion = 23288.656648 eV Total energy + Delta-G solvation = -4017.660246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05550 -40.20388 -39.01431 -37.99324 -35.68970 -34.96881 -32.93686 -32.50973 -31.25366 -30.27204 -29.91620 -28.32420 -25.32975 -24.79125 -23.60952 -23.00256 -22.45156 -21.10439 -20.35917 -19.78683 -18.91209 -17.83785 -17.29698 -16.90394 -16.79184 -16.12481 -15.89449 -15.45761 -15.22786 -15.05905 -14.67443 -14.22617 -13.95480 -13.84151 -13.78164 -13.46970 -13.31447 -13.17778 -12.88758 -12.80082 -12.28857 -12.04337 -11.96379 -11.88322 -11.67325 -11.57268 -11.55336 -11.20607 -11.05586 -10.60057 -10.44573 -10.10995 -10.09843 -9.87427 -9.37012 -9.18705 -9.14734 -8.49674 -8.39709 -8.27172 -6.66938 -4.30787 0.84466 1.14246 1.70776 2.48979 3.30009 3.32220 3.38039 3.49978 3.52861 3.59810 3.90016 4.20158 4.25721 4.34497 4.51509 4.59334 4.64441 4.69419 4.81214 4.83550 4.92587 5.09221 5.10689 5.20778 5.28537 5.34604 5.36526 5.38535 5.53071 5.64473 5.74363 5.96956 6.04863 6.21154 6.25333 6.32689 6.37513 6.41738 6.51324 6.71750 6.75982 6.89466 7.10119 7.19310 7.44661 7.70604 8.12489 8.20569 8.41360 8.71370 9.38500 10.74453 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037278 B = 0.001938 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.924781 B =14446.252535 C =14726.508038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.239 3.761 3 H 0.046 0.954 4 C -0.622 4.622 5 H 0.065 0.935 6 C 0.040 3.960 7 N -0.893 5.893 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.270 1.270 12 N -0.660 5.660 13 C 0.495 3.505 14 O -0.537 6.537 15 C 0.509 3.491 16 O -0.501 6.501 17 N -0.652 5.652 18 C 0.150 3.850 19 C -0.140 4.140 20 C -0.096 4.096 21 C -0.095 4.095 22 C -0.078 4.078 23 H 0.094 0.906 24 C -0.150 4.150 25 C 0.046 3.954 26 O -0.379 6.379 27 C 0.053 3.947 28 C -0.091 4.091 29 C -0.118 4.118 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.407 0.593 35 H 0.423 0.577 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -1.553 27.604 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.137 3.863 3 H 0.064 0.936 4 C -0.660 4.660 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.525 5.525 8 Si 0.869 3.131 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.196 1.196 12 N -0.309 5.309 13 C 0.274 3.726 14 O -0.415 6.415 15 C 0.291 3.709 16 O -0.374 6.374 17 N -0.298 5.298 18 C 0.056 3.944 19 C -0.160 4.160 20 C -0.115 4.115 21 C -0.096 4.096 22 C -0.097 4.097 23 H 0.112 0.888 24 C -0.188 4.188 25 C -0.031 4.031 26 O -0.298 6.298 27 C -0.023 4.023 28 C -0.110 4.110 29 C -0.138 4.138 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.242 0.758 35 H 0.261 0.739 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.145 0.855 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.731 -0.408 26.506 26.770 hybrid contribution 0.215 -1.318 0.886 1.603 sum 3.946 -1.726 27.391 27.728 Atomic orbital electron populations 1.22541 0.98217 1.01355 1.00123 1.19239 0.91051 0.94297 0.81743 0.93616 1.22044 1.42368 1.10763 0.90796 0.91727 1.25705 0.94139 1.05241 0.91604 1.70869 1.40467 1.09832 1.31335 0.84096 0.77577 0.74959 0.76443 1.20730 1.20528 1.19621 1.46252 1.61186 1.14706 1.08775 1.19725 0.81025 0.87280 0.84596 1.90725 1.50807 1.15194 1.84818 1.20856 0.78332 0.86940 0.84741 1.90755 1.46942 1.15111 1.84604 1.43254 1.59993 1.17412 1.09183 1.17797 0.93894 0.96395 0.86332 1.20886 1.01486 1.02857 0.90805 1.20713 0.96332 0.96209 0.98226 1.19532 0.98052 0.98261 0.93788 1.21656 0.97896 0.96896 0.93254 0.88805 1.23086 0.99702 1.01728 0.94261 1.23192 0.87942 0.95524 0.96459 1.88882 1.42950 1.59879 1.38119 1.23717 1.02383 0.94097 0.82115 1.20923 0.99587 0.99267 0.91189 1.21214 0.94985 0.97260 1.00324 0.95066 0.91494 0.93110 0.91928 0.75801 0.73873 0.85323 0.85700 0.90084 0.90135 0.92296 0.89804 0.88659 0.91638 0.85543 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.16 37.16 0.34 -3.23 16 2 C 0.24 5.60 2.14 -69.09 -0.15 5.45 16 3 H 0.05 1.13 6.22 -51.93 -0.32 0.81 16 4 C -0.62 -16.54 9.00 -34.44 -0.31 -16.85 16 5 H 0.06 1.81 7.96 -52.49 -0.42 1.40 16 6 C 0.04 1.11 5.34 -17.82 -0.10 1.02 16 7 N -0.89 -26.10 13.70 55.43 0.76 -25.35 16 8 Si 1.04 24.20 26.43 -169.99 -4.49 19.71 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.79 5.51 56.52 0.31 -5.48 16 12 N -0.66 -13.52 5.06 -55.40 -0.28 -13.80 16 13 C 0.50 9.28 7.85 -11.63 -0.09 9.19 16 14 O -0.54 -10.87 16.15 5.49 0.09 -10.78 16 15 C 0.51 8.15 7.63 -11.63 -0.09 8.06 16 16 O -0.50 -8.73 14.14 5.48 0.08 -8.65 16 17 N -0.65 -8.38 5.32 -10.30 -0.05 -8.43 16 18 C 0.15 1.78 6.28 -83.75 -0.53 1.25 16 19 C -0.14 -1.31 9.96 -39.38 -0.39 -1.71 16 20 C -0.10 -0.79 8.19 -39.61 -0.32 -1.11 16 21 C -0.10 -0.81 4.95 -104.58 -0.52 -1.33 16 22 C -0.08 -0.55 3.34 -89.77 -0.30 -0.85 16 23 H 0.09 0.62 7.95 -51.93 -0.41 0.21 16 24 C -0.15 -0.93 6.50 -25.20 -0.16 -1.09 16 25 C 0.05 0.29 7.70 37.74 0.29 0.58 16 26 O -0.38 -3.35 11.52 -35.23 -0.41 -3.75 16 27 C 0.05 0.38 7.10 38.21 0.27 0.65 16 28 C -0.09 -0.89 9.68 -39.61 -0.38 -1.28 16 29 C -0.12 -1.43 8.66 -39.38 -0.34 -1.77 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.47 4.81 -51.93 -0.25 1.22 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 34 H 0.41 7.96 7.99 -40.82 -0.33 7.64 16 35 H 0.42 4.72 8.29 -40.82 -0.34 4.38 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.13 0.77 7.23 -52.49 -0.38 0.39 16 38 H 0.08 0.50 7.21 -51.93 -0.37 0.12 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.42 6.69 -51.93 -0.35 0.08 16 44 H 0.13 1.02 7.98 -52.49 -0.42 0.60 16 45 H 0.14 1.88 6.39 -52.49 -0.34 1.54 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -30.96 369.90 -7.64 -38.60 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.13 Total: 9.90 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.78 Total: -3.02 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.42 Total: -47.57 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.24 Total: -23.19 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -4.49 Total: 19.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.96 -7.64 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294633211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.352 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds