Wall clock time and date at job start Tue Mar 31 2020 18:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46892 * 2 1 4 4 C 1.50697 * 109.46610 * 240.00177 * 2 1 3 5 5 H 1.07994 * 119.99903 * 245.68896 * 4 2 1 6 6 C 1.37885 * 120.00190 * 65.70306 * 4 2 1 7 7 N 1.31511 * 119.99983 * 197.74711 * 6 4 2 8 8 Si 1.86798 * 120.00005 * 17.73618 * 6 4 2 9 9 H 1.48500 * 109.47277 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.46754 * 60.00540 * 8 6 4 11 11 H 1.48504 * 109.47321 * 300.00891 * 8 6 4 12 12 N 1.46493 * 109.47187 * 120.00243 * 2 1 3 13 13 C 1.34773 * 120.00067 * 274.99968 * 12 2 1 14 14 O 1.21363 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.49361 * 120.00088 * 179.97438 * 13 12 2 16 16 O 1.21375 * 119.99882 * 0.02562 * 15 13 12 17 17 N 1.34773 * 120.00088 * 179.97438 * 15 13 12 18 18 C 1.39725 * 119.99817 * 185.31309 * 17 15 13 19 19 C 1.38926 * 120.07160 * 212.74764 * 18 17 15 20 20 C 1.38096 * 119.92295 * 179.76906 * 19 18 17 21 21 C 1.38299 * 120.07350 * 0.51051 * 20 19 18 22 22 C 1.50703 * 119.92422 * 179.76769 * 21 20 19 23 23 H 1.08997 * 110.80159 * 183.60419 * 22 21 20 24 24 C 1.54809 * 110.90516 * 59.97629 * 22 21 20 25 25 C 1.54108 * 104.18593 * 220.91898 * 24 22 21 26 26 O 1.43743 * 107.29120 * 357.97615 * 25 24 22 27 27 C 1.44380 * 106.97797 * 26.50869 * 26 25 24 28 28 C 1.38288 * 120.15305 * 359.74473 * 21 20 19 29 29 C 1.38102 * 120.07466 * 0.02562 * 28 21 20 30 30 H 1.09003 * 109.46805 * 295.58313 * 1 2 3 31 31 H 1.09000 * 109.47150 * 55.58063 * 1 2 3 32 32 H 1.08997 * 109.47430 * 175.58316 * 1 2 3 33 33 H 0.96998 * 119.99785 * 354.93755 * 7 6 4 34 34 H 0.97002 * 120.00227 * 94.99497 * 12 2 1 35 35 H 0.97009 * 119.99952 * 5.30601 * 17 15 13 36 36 H 1.08008 * 120.04298 * 0.02822 * 19 18 17 37 37 H 1.08002 * 119.96374 * 180.27721 * 20 19 18 38 38 H 1.08998 * 110.49065 * 339.59695 * 24 22 21 39 39 H 1.09002 * 110.49025 * 102.25007 * 24 22 21 40 40 H 1.09008 * 109.87471 * 117.39470 * 25 24 22 41 41 H 1.08993 * 109.87907 * 238.54302 * 25 24 22 42 42 H 1.08997 * 110.61661 * 201.43565 * 27 26 25 43 43 H 1.09001 * 110.61416 * 78.44125 * 27 26 25 44 44 H 1.07998 * 119.96476 * 180.02562 * 28 21 20 45 45 H 1.07998 * 120.03803 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5752 -1.6389 -1.1341 6 6 1.7988 -0.1747 -2.4794 7 7 1.9126 -0.9295 -3.5504 8 14 1.3205 1.6229 -2.6502 9 1 1.1264 1.9493 -4.0858 10 1 2.3980 2.4772 -2.0892 11 1 0.0566 1.8713 -1.9111 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1593 2.4116 15 6 2.6444 -0.7226 3.5767 16 8 2.9331 -1.9003 3.5221 17 7 2.7737 -0.0502 4.7375 18 6 3.3425 -0.6778 5.8488 19 6 2.9117 -0.3518 7.1287 20 6 3.4726 -0.9774 8.2246 21 6 4.4696 -1.9199 8.0496 22 6 5.0830 -2.5967 9.2482 23 1 5.8924 -3.2611 8.9455 24 6 4.0105 -3.3657 10.0574 25 6 4.3717 -3.0817 11.5284 26 8 5.5618 -2.2756 11.5282 27 6 5.5804 -1.5517 10.2791 28 6 4.9044 -2.2429 6.7772 29 6 4.3445 -1.6245 5.6767 30 1 -0.3633 0.4438 0.9270 31 1 -0.3633 0.5809 -0.8477 32 1 -0.3634 -1.0246 -0.0791 33 1 2.2315 -1.8419 -3.4690 34 1 2.2490 -1.6318 1.1525 35 1 2.4719 0.8695 4.8015 36 1 2.1360 0.3871 7.2664 37 1 3.1351 -0.7278 9.2197 38 1 3.0148 -2.9856 9.8289 39 1 4.0690 -4.4341 9.8498 40 1 3.5579 -2.5412 12.0121 41 1 4.5590 -4.0193 12.0517 42 1 6.5927 -1.2271 10.0387 43 1 4.9022 -0.6993 10.3193 44 1 5.6829 -2.9796 6.6441 45 1 4.6843 -1.8776 4.6832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294633211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:16 Heat of formation + Delta-G solvation = -112.675011 kcal Electronic energy + Delta-G solvation = -27307.258947 eV Core-core repulsion = 23288.656648 eV Total energy + Delta-G solvation = -4018.602300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19996 -41.01837 -40.13518 -39.06808 -37.19678 -36.23765 -34.51944 -33.63397 -32.01571 -31.73480 -30.82755 -29.08132 -27.01292 -26.28332 -24.48894 -23.68557 -23.21376 -22.39506 -21.47694 -21.12001 -20.38984 -19.30143 -18.60968 -17.77799 -17.55436 -17.28896 -17.05656 -16.69567 -16.16689 -15.91935 -15.70476 -15.52078 -15.11935 -15.00091 -14.73772 -14.62036 -14.45696 -14.32223 -14.21841 -13.99727 -13.62508 -13.48571 -13.42182 -12.91683 -12.70892 -12.46413 -12.45009 -12.19848 -12.06701 -11.96742 -11.65871 -11.61266 -11.31663 -11.17524 -10.77217 -10.63360 -10.49703 -10.19583 -9.94335 -9.13597 -8.85186 -6.49634 -0.14633 0.38564 0.53009 1.22636 1.46104 1.52778 1.71531 2.02256 2.42044 2.60842 2.69517 2.98387 3.01096 3.34200 3.65636 3.69009 3.92236 3.97104 4.01303 4.15568 4.30672 4.31920 4.39458 4.41232 4.46199 4.55129 4.64878 4.68695 4.79999 4.87115 4.88797 4.98250 5.01418 5.06073 5.11147 5.17284 5.20564 5.29090 5.37526 5.42217 5.51759 5.60563 5.86818 5.91345 5.95282 5.98046 6.39760 6.44949 6.65319 6.90384 7.27616 8.55215 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037278 B = 0.001938 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.924781 B =14446.252535 C =14726.508038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.039 0.961 4 C -0.621 4.621 5 H 0.036 0.964 6 C -0.006 4.006 7 N -0.923 5.923 8 Si 1.075 2.925 9 H -0.283 1.283 10 H -0.269 1.269 11 H -0.239 1.239 12 N -0.669 5.669 13 C 0.499 3.501 14 O -0.549 6.549 15 C 0.515 3.485 16 O -0.520 6.520 17 N -0.633 5.633 18 C 0.122 3.878 19 C -0.131 4.131 20 C -0.092 4.092 21 C -0.084 4.084 22 C -0.077 4.077 23 H 0.096 0.904 24 C -0.147 4.147 25 C 0.042 3.958 26 O -0.402 6.402 27 C 0.052 3.948 28 C -0.098 4.098 29 C -0.137 4.137 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.257 0.743 34 H 0.409 0.591 35 H 0.431 0.569 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -0.360 30.666 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.057 0.943 4 C -0.659 4.659 5 H 0.054 0.946 6 C -0.206 4.206 7 N -0.557 5.557 8 Si 0.896 3.104 9 H -0.209 1.209 10 H -0.194 1.194 11 H -0.163 1.163 12 N -0.318 5.318 13 C 0.279 3.721 14 O -0.428 6.428 15 C 0.297 3.703 16 O -0.395 6.395 17 N -0.280 5.280 18 C 0.029 3.971 19 C -0.151 4.151 20 C -0.110 4.110 21 C -0.085 4.085 22 C -0.096 4.096 23 H 0.114 0.886 24 C -0.185 4.185 25 C -0.034 4.034 26 O -0.322 6.322 27 C -0.024 4.024 28 C -0.116 4.116 29 C -0.157 4.157 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.244 0.756 35 H 0.271 0.729 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.156 0.844 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.958 0.786 29.636 29.793 hybrid contribution 0.557 -1.764 0.109 1.853 sum 3.515 -0.979 29.745 29.968 Atomic orbital electron populations 1.22422 0.96625 1.01523 1.00975 1.19007 0.92157 0.93480 0.81569 0.94310 1.22201 1.41408 1.09740 0.92525 0.94566 1.26999 0.93838 1.08355 0.91458 1.70985 1.42827 1.09531 1.32369 0.83700 0.79132 0.70722 0.76843 1.20870 1.19415 1.16304 1.46092 1.62056 1.14834 1.08863 1.20078 0.80085 0.87039 0.84897 1.90707 1.51123 1.15764 1.85210 1.20214 0.78707 0.86550 0.84783 1.90760 1.48219 1.15740 1.84830 1.43074 1.58931 1.17565 1.08464 1.18000 0.94913 0.97513 0.86715 1.21148 1.01473 1.02774 0.89737 1.21045 0.95561 0.95303 0.99131 1.19723 0.97460 0.97657 0.93653 1.21656 0.98238 0.97031 0.92646 0.88577 1.23080 0.99469 1.01956 0.93953 1.23325 0.87573 0.95832 0.96688 1.88863 1.44071 1.60432 1.38805 1.23787 1.02929 0.94140 0.81545 1.21081 0.99910 0.99442 0.91212 1.21169 0.96131 0.98399 1.00040 0.93315 0.91549 0.93217 0.93353 0.75567 0.72882 0.83027 0.82971 0.89672 0.89645 0.91267 0.89038 0.88332 0.90755 0.84389 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.61 9.16 71.98 0.66 -5.95 16 2 C 0.24 11.19 2.14 44.25 0.09 11.29 16 3 H 0.04 1.87 6.22 -2.39 -0.01 1.86 16 4 C -0.62 -33.62 9.00 25.60 0.23 -33.39 16 5 H 0.04 2.12 7.96 -2.91 -0.02 2.09 16 6 C -0.01 -0.31 5.34 84.66 0.45 0.14 16 7 N -0.92 -55.27 13.70 21.45 0.29 -54.98 16 8 Si 1.07 47.99 26.43 68.60 1.81 49.80 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.24 -9.42 5.51 99.48 0.55 -8.87 16 12 N -0.67 -27.45 5.06 -447.54 -2.27 -29.71 16 13 C 0.50 18.44 7.85 87.24 0.68 19.13 16 14 O -0.55 -21.53 16.15 -3.29 -0.05 -21.59 16 15 C 0.52 16.36 7.63 87.24 0.67 17.02 16 16 O -0.52 -18.35 14.14 -3.32 -0.05 -18.40 16 17 N -0.63 -15.59 5.32 -304.84 -1.62 -17.22 16 18 C 0.12 2.73 6.28 38.21 0.24 2.97 16 19 C -0.13 -2.09 9.96 22.40 0.22 -1.87 16 20 C -0.09 -1.21 8.19 22.25 0.18 -1.02 16 21 C -0.08 -1.22 4.95 -19.84 -0.10 -1.32 16 22 C -0.08 -0.88 3.34 -10.24 -0.03 -0.92 16 23 H 0.10 1.08 7.95 -2.39 -0.02 1.06 16 24 C -0.15 -1.42 6.50 31.59 0.21 -1.21 16 25 C 0.04 0.43 7.70 72.36 0.56 0.99 16 26 O -0.40 -6.22 11.52 -148.98 -1.72 -7.94 16 27 C 0.05 0.61 7.10 72.66 0.52 1.13 16 28 C -0.10 -1.81 9.68 22.25 0.22 -1.59 16 29 C -0.14 -3.30 8.66 22.40 0.19 -3.10 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.77 4.81 -2.39 -0.01 2.76 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.26 15.57 8.73 -92.71 -0.81 14.76 16 34 H 0.41 16.38 7.99 -92.71 -0.74 15.64 16 35 H 0.43 8.91 8.29 -92.70 -0.77 8.14 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.15 1.20 7.23 -2.91 -0.02 1.18 16 38 H 0.08 0.76 7.21 -2.39 -0.02 0.75 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.56 8.14 -2.38 -0.02 0.55 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 0.72 6.69 -2.39 -0.02 0.71 16 44 H 0.14 2.11 7.98 -2.91 -0.02 2.09 16 45 H 0.11 3.24 6.39 -2.91 -0.02 3.22 16 Total: -1.00 -67.20 369.90 0.73 -66.47 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.66 Total: 31.28 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 4.99 Total: 2.28 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -3.59 Total: -101.91 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.82 Total: -47.92 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.81 Total: 49.80 kcal Total: -67.20 0.73 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294633211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.205 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds