Wall clock time and date at job start Tue Mar 31 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46893 * 2 1 4 4 C 1.50697 * 109.46773 * 119.99612 * 2 1 3 5 5 H 1.08001 * 120.00416 * 119.99757 * 4 2 1 6 6 C 1.37883 * 120.00266 * 299.99862 * 4 2 1 7 7 N 1.31511 * 119.99733 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00298 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47237 * 89.99959 * 8 6 4 10 10 H 1.48500 * 109.47332 * 209.99942 * 8 6 4 11 11 H 1.48498 * 109.47155 * 330.00185 * 8 6 4 12 12 N 1.46492 * 109.47002 * 239.99622 * 2 1 3 13 13 C 1.34776 * 120.00361 * 85.00364 * 12 2 1 14 14 O 1.21364 * 119.99655 * 359.97438 * 13 12 2 15 15 C 1.49352 * 120.00098 * 179.97438 * 13 12 2 16 16 O 1.21373 * 120.00018 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99515 * 180.02562 * 15 13 12 18 18 C 1.39728 * 119.99575 * 185.27303 * 17 15 13 19 19 C 1.38934 * 120.07517 * 33.29746 * 18 17 15 20 20 C 1.38095 * 119.92322 * 179.97438 * 19 18 17 21 21 C 1.38293 * 120.07508 * 0.02569 * 20 19 18 22 22 C 1.50699 * 119.92476 * 179.97438 * 21 20 19 23 23 H 1.09008 * 110.80576 * 3.62503 * 22 21 20 24 24 C 1.54816 * 110.91064 * 240.00168 * 22 21 20 25 25 C 1.54096 * 104.19018 * 220.91896 * 24 22 21 26 26 O 1.43741 * 107.29319 * 357.96795 * 25 24 22 27 27 C 1.44383 * 106.97534 * 26.51538 * 26 25 24 28 28 C 1.38290 * 120.15506 * 359.97438 * 21 20 19 29 29 C 1.38101 * 120.07443 * 0.02562 * 28 21 20 30 30 H 1.08993 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46878 * 300.00704 * 1 2 3 32 32 H 1.09005 * 109.46510 * 60.00045 * 1 2 3 33 33 H 0.96998 * 120.00058 * 179.97438 * 7 6 4 34 34 H 0.97009 * 119.99758 * 264.99866 * 12 2 1 35 35 H 0.96995 * 120.00733 * 5.27555 * 17 15 13 36 36 H 1.07992 * 120.03745 * 0.25424 * 19 18 17 37 37 H 1.07999 * 119.96273 * 179.97438 * 20 19 18 38 38 H 1.09007 * 110.48330 * 339.59795 * 24 22 21 39 39 H 1.09004 * 110.48897 * 102.23957 * 24 22 21 40 40 H 1.09006 * 109.87892 * 117.38933 * 25 24 22 41 41 H 1.08995 * 109.87936 * 238.54147 * 25 24 22 42 42 H 1.09008 * 110.61874 * 201.44002 * 27 26 25 43 43 H 1.08996 * 110.62303 * 78.44112 * 27 26 25 44 44 H 1.08002 * 119.96858 * 179.97438 * 28 21 20 45 45 H 1.08002 * 120.03392 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1192 4.0081 9 1 3.6304 -0.5437 4.4120 10 1 1.3443 -0.9486 5.1124 11 1 2.4879 -2.5651 3.7125 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8581 1.1590 -2.4118 15 6 2.6455 -0.7225 -3.5763 16 8 2.9350 -1.8999 -3.5215 17 7 2.7748 -0.0500 -4.7372 18 6 3.1349 -0.7313 -5.9028 19 6 2.7153 -2.0407 -6.1017 20 6 3.0726 -2.7109 -7.2551 21 6 3.8475 -2.0803 -8.2112 22 6 4.2359 -2.8150 -9.4683 23 1 3.7757 -3.8027 -9.4974 24 6 5.7755 -2.9190 -9.5942 25 6 6.0509 -2.6576 -11.0877 26 8 4.7784 -2.4789 -11.7319 27 6 3.8621 -1.9925 -10.7277 28 6 4.2669 -0.7770 -8.0165 29 6 3.9133 -0.1008 -6.8654 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3632 0.5139 -0.8901 33 1 0.7081 1.1611 3.4843 34 1 2.2491 -1.6319 -1.1524 35 1 2.6179 0.9068 -4.7636 36 1 2.1067 -2.5324 -5.3573 37 1 2.7471 -3.7289 -7.4102 38 1 6.2606 -2.1616 -8.9785 39 1 6.1148 -3.9159 -9.3125 40 1 6.6536 -1.7565 -11.2013 41 1 6.5704 -3.5109 -11.5236 42 1 2.8309 -2.1883 -11.0219 43 1 4.0162 -0.9281 -10.5507 44 1 4.8724 -0.2875 -8.7650 45 1 4.2415 0.9169 -6.7138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294633215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:21 Heat of formation + Delta-G solvation = -92.120323 kcal Electronic energy + Delta-G solvation = -27235.792748 eV Core-core repulsion = 23218.081766 eV Total energy + Delta-G solvation = -4017.710982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96990 -40.14079 -38.90423 -37.87536 -35.56786 -34.83979 -32.89669 -32.43921 -31.20702 -30.22243 -29.24675 -28.23847 -25.39981 -24.99253 -23.57101 -22.96241 -22.42370 -21.15619 -20.38485 -19.67657 -18.74582 -17.70134 -16.93928 -16.76319 -16.39262 -15.89202 -15.65143 -15.42912 -15.22576 -15.08955 -14.58262 -14.31468 -13.98691 -13.81642 -13.75898 -13.43223 -13.28725 -13.09935 -12.84829 -12.52860 -11.99517 -11.92540 -11.85177 -11.61065 -11.51455 -11.21655 -11.11608 -11.05372 -11.02013 -10.84854 -10.39887 -10.36938 -10.30998 -10.07415 -9.24768 -9.18064 -9.06955 -8.66229 -8.24325 -8.16917 -6.21022 -4.30762 0.90651 1.18797 1.82017 2.60520 3.21508 3.28317 3.31099 3.39543 3.55335 3.68976 4.01149 4.23119 4.28750 4.30065 4.54676 4.63672 4.67440 4.73980 4.84622 4.94138 5.02303 5.12166 5.15257 5.24230 5.32028 5.37875 5.40931 5.42211 5.55784 5.67764 5.78754 6.01802 6.10665 6.27151 6.36664 6.44240 6.67350 6.77173 6.80100 6.97275 7.03052 7.16424 7.35070 7.57820 7.72569 7.84611 8.00871 8.37721 8.55601 8.80148 9.36360 10.85000 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.001891 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.201103 B =14799.586302 C =15164.645739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.667 5.667 13 C 0.494 3.506 14 O -0.535 6.535 15 C 0.508 3.492 16 O -0.503 6.503 17 N -0.653 5.653 18 C 0.151 3.849 19 C -0.118 4.118 20 C -0.092 4.092 21 C -0.096 4.096 22 C -0.078 4.078 23 H 0.093 0.907 24 C -0.150 4.150 25 C 0.046 3.954 26 O -0.380 6.380 27 C 0.053 3.947 28 C -0.096 4.096 29 C -0.140 4.140 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.423 0.577 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 -5.121 -24.388 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.316 5.316 13 C 0.273 3.727 14 O -0.414 6.414 15 C 0.291 3.709 16 O -0.377 6.377 17 N -0.300 5.300 18 C 0.057 3.943 19 C -0.138 4.138 20 C -0.110 4.110 21 C -0.097 4.097 22 C -0.097 4.097 23 H 0.112 0.888 24 C -0.188 4.188 25 C -0.031 4.031 26 O -0.299 6.299 27 C -0.023 4.023 28 C -0.115 4.115 29 C -0.161 4.161 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.261 0.739 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.461 -5.032 -24.322 25.664 hybrid contribution 0.429 -0.338 1.192 1.311 sum 6.890 -5.370 -23.130 24.725 Atomic orbital electron populations 1.22102 0.97770 0.99592 1.01249 1.18996 0.91499 0.94148 0.79319 0.92763 1.21182 1.32844 1.13515 0.89992 0.91735 1.24883 0.94664 0.94952 0.99121 1.69887 1.35588 1.22393 1.24123 0.86382 0.78604 0.79910 0.81856 1.20476 1.20995 1.19723 1.46515 1.61202 1.14563 1.09276 1.19654 0.81268 0.87309 0.84518 1.90735 1.50852 1.15194 1.84589 1.20991 0.77849 0.87252 0.84804 1.90741 1.46301 1.15707 1.84925 1.43282 1.67176 1.13264 1.06231 1.17812 0.96576 0.93218 0.86695 1.21193 1.00652 0.93955 0.97972 1.20911 0.97555 0.99711 0.92836 1.19518 0.99998 0.94485 0.95728 1.21652 0.95816 0.99613 0.92585 0.88840 1.23088 0.95312 1.03647 0.96739 1.23189 0.86657 1.01247 0.92021 1.88879 1.20493 1.86695 1.33792 1.23719 0.94623 0.97630 0.86349 1.20709 0.99878 0.93980 0.96918 1.20903 0.99172 1.01104 0.94881 0.95069 0.88677 0.96456 0.92417 0.76303 0.73865 0.84509 0.85600 0.90066 0.90149 0.92298 0.89824 0.88677 0.91627 0.85740 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.46 2.56 -69.08 -0.18 6.29 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.15 11.32 55.43 0.63 -23.52 16 8 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 N -0.67 -14.01 5.06 -55.40 -0.28 -14.29 16 13 C 0.49 9.67 7.85 -11.63 -0.09 9.58 16 14 O -0.53 -11.54 16.15 5.48 0.09 -11.46 16 15 C 0.51 8.40 7.62 -11.63 -0.09 8.31 16 16 O -0.50 -8.91 14.16 5.48 0.08 -8.83 16 17 N -0.65 -8.74 5.32 -10.30 -0.05 -8.79 16 18 C 0.15 1.85 6.28 -83.75 -0.53 1.32 16 19 C -0.12 -1.45 8.65 -39.38 -0.34 -1.79 16 20 C -0.09 -0.91 9.68 -39.61 -0.38 -1.29 16 21 C -0.10 -0.84 4.95 -104.58 -0.52 -1.35 16 22 C -0.08 -0.56 3.34 -89.76 -0.30 -0.86 16 23 H 0.09 0.63 7.96 -51.92 -0.41 0.22 16 24 C -0.15 -0.96 6.50 -25.20 -0.16 -1.12 16 25 C 0.05 0.30 7.70 37.73 0.29 0.59 16 26 O -0.38 -3.40 11.52 -35.23 -0.41 -3.81 16 27 C 0.05 0.39 7.10 38.21 0.27 0.66 16 28 C -0.10 -0.82 8.19 -39.61 -0.32 -1.14 16 29 C -0.14 -1.37 9.96 -39.38 -0.39 -1.77 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.40 7.87 8.01 -40.82 -0.33 7.54 16 35 H 0.42 5.02 8.30 -40.82 -0.34 4.68 16 36 H 0.14 1.87 6.42 -52.49 -0.34 1.53 16 37 H 0.13 1.02 7.98 -52.49 -0.42 0.60 16 38 H 0.08 0.52 7.21 -51.92 -0.37 0.14 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 43 H 0.07 0.44 6.69 -51.93 -0.35 0.09 16 44 H 0.12 0.81 7.23 -52.49 -0.38 0.43 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -29.99 374.46 -8.26 -38.26 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.14 Total: 9.88 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.79 Total: 1.59 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.29 Total: -46.61 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.24 Total: -24.09 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.99 -8.26 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294633215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.863 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds