Wall clock time and date at job start Tue Mar 31 2020 18:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46893 * 2 1 4 4 C 1.50697 * 109.46773 * 119.99612 * 2 1 3 5 5 H 1.08001 * 120.00416 * 119.99757 * 4 2 1 6 6 C 1.37883 * 120.00266 * 299.99862 * 4 2 1 7 7 N 1.31511 * 119.99733 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00298 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47237 * 89.99959 * 8 6 4 10 10 H 1.48500 * 109.47332 * 209.99942 * 8 6 4 11 11 H 1.48498 * 109.47155 * 330.00185 * 8 6 4 12 12 N 1.46492 * 109.47002 * 239.99622 * 2 1 3 13 13 C 1.34776 * 120.00361 * 85.00364 * 12 2 1 14 14 O 1.21364 * 119.99655 * 359.97438 * 13 12 2 15 15 C 1.49352 * 120.00098 * 179.97438 * 13 12 2 16 16 O 1.21373 * 120.00018 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99515 * 180.02562 * 15 13 12 18 18 C 1.39728 * 119.99575 * 185.27303 * 17 15 13 19 19 C 1.38934 * 120.07517 * 33.29746 * 18 17 15 20 20 C 1.38095 * 119.92322 * 179.97438 * 19 18 17 21 21 C 1.38293 * 120.07508 * 0.02569 * 20 19 18 22 22 C 1.50699 * 119.92476 * 179.97438 * 21 20 19 23 23 H 1.09008 * 110.80576 * 3.62503 * 22 21 20 24 24 C 1.54816 * 110.91064 * 240.00168 * 22 21 20 25 25 C 1.54096 * 104.19018 * 220.91896 * 24 22 21 26 26 O 1.43741 * 107.29319 * 357.96795 * 25 24 22 27 27 C 1.44383 * 106.97534 * 26.51538 * 26 25 24 28 28 C 1.38290 * 120.15506 * 359.97438 * 21 20 19 29 29 C 1.38101 * 120.07443 * 0.02562 * 28 21 20 30 30 H 1.08993 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46878 * 300.00704 * 1 2 3 32 32 H 1.09005 * 109.46510 * 60.00045 * 1 2 3 33 33 H 0.96998 * 120.00058 * 179.97438 * 7 6 4 34 34 H 0.97009 * 119.99758 * 264.99866 * 12 2 1 35 35 H 0.96995 * 120.00733 * 5.27555 * 17 15 13 36 36 H 1.07992 * 120.03745 * 0.25424 * 19 18 17 37 37 H 1.07999 * 119.96273 * 179.97438 * 20 19 18 38 38 H 1.09007 * 110.48330 * 339.59795 * 24 22 21 39 39 H 1.09004 * 110.48897 * 102.23957 * 24 22 21 40 40 H 1.09006 * 109.87892 * 117.38933 * 25 24 22 41 41 H 1.08995 * 109.87936 * 238.54147 * 25 24 22 42 42 H 1.09008 * 110.61874 * 201.44002 * 27 26 25 43 43 H 1.08996 * 110.62303 * 78.44112 * 27 26 25 44 44 H 1.08002 * 119.96858 * 179.97438 * 28 21 20 45 45 H 1.08002 * 120.03392 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1192 4.0081 9 1 3.6304 -0.5437 4.4120 10 1 1.3443 -0.9486 5.1124 11 1 2.4879 -2.5651 3.7125 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8581 1.1590 -2.4118 15 6 2.6455 -0.7225 -3.5763 16 8 2.9350 -1.8999 -3.5215 17 7 2.7748 -0.0500 -4.7372 18 6 3.1349 -0.7313 -5.9028 19 6 2.7153 -2.0407 -6.1017 20 6 3.0726 -2.7109 -7.2551 21 6 3.8475 -2.0803 -8.2112 22 6 4.2359 -2.8150 -9.4683 23 1 3.7757 -3.8027 -9.4974 24 6 5.7755 -2.9190 -9.5942 25 6 6.0509 -2.6576 -11.0877 26 8 4.7784 -2.4789 -11.7319 27 6 3.8621 -1.9925 -10.7277 28 6 4.2669 -0.7770 -8.0165 29 6 3.9133 -0.1008 -6.8654 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3632 0.5139 -0.8901 33 1 0.7081 1.1611 3.4843 34 1 2.2491 -1.6319 -1.1524 35 1 2.6179 0.9068 -4.7636 36 1 2.1067 -2.5324 -5.3573 37 1 2.7471 -3.7289 -7.4102 38 1 6.2606 -2.1616 -8.9785 39 1 6.1148 -3.9159 -9.3125 40 1 6.6536 -1.7565 -11.2013 41 1 6.5704 -3.5109 -11.5236 42 1 2.8309 -2.1883 -11.0219 43 1 4.0162 -0.9281 -10.5507 44 1 4.8724 -0.2875 -8.7650 45 1 4.2415 0.9169 -6.7138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294633215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:20 Heat of formation + Delta-G solvation = -111.862010 kcal Electronic energy + Delta-G solvation = -27236.648812 eV Core-core repulsion = 23218.081766 eV Total energy + Delta-G solvation = -4018.567045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14329 -40.98016 -40.06651 -39.02542 -37.09519 -36.19399 -34.38089 -33.60641 -31.98964 -31.16213 -30.77711 -29.03767 -27.39446 -26.28149 -24.48161 -23.66699 -23.24450 -22.52105 -21.44835 -21.05504 -20.17283 -18.76488 -18.17166 -17.68587 -17.49665 -17.17704 -16.99609 -16.91939 -16.19754 -15.96184 -15.80274 -15.50552 -15.12180 -14.97261 -14.62767 -14.46952 -14.41554 -14.25271 -13.97800 -13.76059 -13.46683 -13.08957 -12.93615 -12.89060 -12.74348 -12.68203 -12.43727 -12.30617 -12.18200 -12.15429 -12.01702 -11.59353 -11.28132 -11.18393 -10.72102 -10.63608 -10.60163 -10.01562 -9.91960 -9.11265 -8.21598 -6.38877 -0.10261 0.40867 0.57640 1.28840 1.44975 1.46094 1.56619 2.09106 2.37943 2.70597 2.72154 3.02516 3.09277 3.44070 3.67390 3.70859 3.94254 3.99299 4.02922 4.17102 4.32403 4.33643 4.41627 4.48738 4.57159 4.68016 4.81482 4.86534 4.88485 4.89997 4.99603 5.03580 5.07617 5.13061 5.19584 5.24356 5.28111 5.37930 5.43230 5.58073 5.62511 5.74083 5.91298 5.94648 6.01468 6.01821 6.50450 6.62947 6.74991 7.03704 7.33215 8.84518 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.001891 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.201103 B =14799.586302 C =15164.645739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.267 3.733 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.070 0.930 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.972 3.028 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.264 1.264 12 N -0.670 5.670 13 C 0.495 3.505 14 O -0.557 6.557 15 C 0.518 3.482 16 O -0.518 6.518 17 N -0.636 5.636 18 C 0.122 3.878 19 C -0.135 4.135 20 C -0.097 4.097 21 C -0.085 4.085 22 C -0.076 4.076 23 H 0.098 0.902 24 C -0.147 4.147 25 C 0.042 3.958 26 O -0.402 6.402 27 C 0.052 3.948 28 C -0.093 4.093 29 C -0.134 4.134 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.410 0.590 35 H 0.430 0.570 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.151 0.849 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.000 -5.993 -26.001 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.165 3.835 3 H 0.034 0.966 4 C -0.590 4.590 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.797 3.203 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.188 1.188 12 N -0.319 5.319 13 C 0.275 3.725 14 O -0.437 6.437 15 C 0.300 3.700 16 O -0.393 6.393 17 N -0.283 5.283 18 C 0.028 3.972 19 C -0.155 4.155 20 C -0.115 4.115 21 C -0.085 4.085 22 C -0.095 4.095 23 H 0.116 0.884 24 C -0.185 4.185 25 C -0.034 4.034 26 O -0.322 6.322 27 C -0.024 4.024 28 C -0.111 4.111 29 C -0.154 4.154 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.269 0.731 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.169 0.831 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.831 -5.906 -25.992 27.781 hybrid contribution 0.038 -0.042 1.517 1.518 sum 7.869 -5.948 -24.475 26.388 Atomic orbital electron populations 1.21929 0.97398 0.99828 1.00345 1.18637 0.91754 0.92422 0.80688 0.96630 1.21476 1.33071 1.13785 0.90705 0.91177 1.25733 0.94741 0.95585 1.02086 1.70012 1.36470 1.23614 1.24861 0.85339 0.77907 0.79038 0.78037 1.20231 1.20654 1.18827 1.46269 1.61791 1.14836 1.09008 1.20139 0.80262 0.87018 0.85089 1.90714 1.51535 1.16299 1.85157 1.20203 0.78386 0.86837 0.84606 1.90741 1.47487 1.15997 1.85042 1.43104 1.65989 1.13459 1.05717 1.18025 0.98704 0.93623 0.86804 1.21171 1.01374 0.94338 0.98651 1.21091 0.97653 1.00439 0.92318 1.19721 0.98541 0.94582 0.95696 1.21656 0.96535 0.99650 0.91655 0.88407 1.23082 0.94514 1.04162 0.96727 1.23321 0.86013 1.02150 0.91938 1.88862 1.21550 1.86930 1.34820 1.23791 0.94724 0.97965 0.85960 1.21026 0.99391 0.93837 0.96823 1.21145 0.97984 1.01936 0.94317 0.94125 0.90755 0.96080 0.92289 0.75408 0.73090 0.86525 0.84138 0.89786 0.89559 0.91374 0.88994 0.88257 0.90881 0.83117 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.26 71.98 0.67 -6.02 16 2 C 0.27 13.58 2.56 44.25 0.11 13.69 16 3 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 4 C -0.55 -29.04 8.73 25.60 0.22 -28.82 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.91 -50.69 11.32 21.45 0.24 -50.45 16 8 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 9 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 N -0.67 -28.68 5.06 -447.54 -2.27 -30.94 16 13 C 0.50 19.71 7.85 87.24 0.68 20.40 16 14 O -0.56 -24.58 16.15 -3.29 -0.05 -24.63 16 15 C 0.52 17.19 7.62 87.24 0.66 17.86 16 16 O -0.52 -18.42 14.16 -3.32 -0.05 -18.47 16 17 N -0.64 -16.77 5.32 -304.83 -1.62 -18.39 16 18 C 0.12 2.85 6.28 38.21 0.24 3.09 16 19 C -0.14 -3.26 8.65 22.40 0.19 -3.07 16 20 C -0.10 -1.78 9.68 22.25 0.22 -1.56 16 21 C -0.08 -1.26 4.95 -19.84 -0.10 -1.36 16 22 C -0.08 -0.89 3.34 -10.24 -0.03 -0.92 16 23 H 0.10 1.08 7.96 -2.38 -0.02 1.06 16 24 C -0.15 -1.47 6.50 31.58 0.21 -1.26 16 25 C 0.04 0.45 7.70 72.35 0.56 1.00 16 26 O -0.40 -6.33 11.52 -148.98 -1.72 -8.05 16 27 C 0.05 0.62 7.10 72.66 0.52 1.14 16 28 C -0.09 -1.29 8.19 22.25 0.18 -1.11 16 29 C -0.13 -2.31 9.96 22.40 0.22 -2.09 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 3.97 6.07 -2.38 -0.01 3.95 16 32 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.41 16.23 8.01 -92.70 -0.74 15.49 16 35 H 0.43 9.96 8.30 -92.71 -0.77 9.19 16 36 H 0.12 3.26 6.42 -2.91 -0.02 3.24 16 37 H 0.14 2.08 7.98 -2.91 -0.02 2.05 16 38 H 0.08 0.80 7.21 -2.38 -0.02 0.79 16 39 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.07 0.75 6.69 -2.39 -0.02 0.74 16 44 H 0.15 1.35 7.23 -2.91 -0.02 1.33 16 45 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -64.79 374.46 1.10 -63.70 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.47 Total: 31.16 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 5.00 Total: 12.44 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -3.65 Total: -99.78 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.82 Total: -51.15 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -64.79 1.10 -63.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294633215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.166 kcal (2) G-P(sol) polarization free energy of solvation -64.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds