Wall clock time and date at job start Tue Mar 31 2020 17:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.70341 * 2 1 4 4 C 1.53193 * 109.58728 * 120.35787 * 2 1 3 5 5 C 1.53039 * 109.31498 * 174.42093 * 4 2 1 6 6 C 1.53046 * 109.53433 * 298.63716 * 5 4 2 7 7 C 1.52758 * 109.38787 * 61.23740 * 6 5 4 8 8 N 1.46928 * 109.58188 * 239.64360 * 2 1 3 9 9 C 1.34772 * 120.63533 * 6.58714 * 8 2 1 10 10 O 1.21357 * 119.99679 * 6.63509 * 9 8 2 11 11 C 1.49351 * 120.00201 * 186.63639 * 9 8 2 12 12 O 1.21374 * 120.00113 * 6.19700 * 11 9 8 13 13 N 1.34777 * 119.99832 * 186.19547 * 11 9 8 14 14 C 1.39731 * 119.99891 * 175.11453 * 13 11 9 15 15 C 1.39019 * 120.03987 * 330.99725 * 14 13 11 16 16 C 1.38138 * 120.06100 * 180.02562 * 15 14 13 17 17 C 1.38173 * 120.14490 * 359.95110 * 16 15 14 18 18 C 1.38920 * 120.08330 * 0.02874 * 17 16 15 19 19 O 1.35748 * 120.03173 * 179.97438 * 18 17 16 20 20 C 1.34838 * 117.00021 * 174.28353 * 19 18 17 21 21 H 1.07999 * 119.99807 * 5.06743 * 20 19 18 22 22 C 1.38653 * 120.00016 * 185.06689 * 20 19 18 23 23 N 1.31558 * 119.99858 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99927 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47339 * 90.00158 * 24 22 20 26 26 H 1.48501 * 109.46941 * 210.00032 * 24 22 20 27 27 H 1.48504 * 109.47273 * 329.99832 * 24 22 20 28 28 C 1.38756 * 119.93742 * 359.97438 * 18 17 16 29 29 H 1.09001 * 109.47491 * 173.08146 * 1 2 3 30 30 H 1.09002 * 109.47296 * 293.08038 * 1 2 3 31 31 H 1.08997 * 109.47542 * 53.07410 * 1 2 3 32 32 H 1.08996 * 109.49705 * 294.37289 * 4 2 1 33 33 H 1.09007 * 109.49619 * 54.46952 * 4 2 1 34 34 H 1.08993 * 109.45730 * 58.65343 * 5 4 2 35 35 H 1.08993 * 109.46288 * 178.63098 * 5 4 2 36 36 H 1.08998 * 109.49598 * 181.31732 * 6 5 4 37 37 H 1.08999 * 109.49523 * 301.37573 * 6 5 4 38 38 H 1.08994 * 109.50877 * 185.70310 * 7 6 5 39 39 H 1.09004 * 109.42874 * 65.42111 * 7 6 5 40 40 H 0.97001 * 120.00054 * 355.10872 * 13 11 9 41 41 H 1.08005 * 119.96752 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.92589 * 179.97438 * 16 15 14 43 43 H 1.08006 * 119.96100 * 180.02562 * 17 16 15 44 44 H 0.97002 * 119.99856 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.07164 * 179.72971 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8481 1.1701 6 6 3.9568 -1.6658 -0.0636 7 6 3.4643 -0.9520 -1.3212 8 7 2.0224 -0.6996 -1.1945 9 6 1.1672 -1.1069 -2.1532 10 8 -0.0036 -0.7930 -2.0952 11 6 1.6604 -1.9447 -3.2870 12 8 2.8035 -2.3527 -3.2877 13 7 0.8361 -2.2476 -4.3094 14 6 1.3246 -2.9440 -5.4179 15 6 2.6583 -2.8150 -5.7885 16 6 3.1416 -3.5029 -6.8846 17 6 2.3021 -4.3217 -7.6154 18 6 0.9684 -4.4553 -7.2502 19 8 0.1445 -5.2596 -7.9692 20 6 -1.1047 -5.4381 -7.4938 21 1 -1.4359 -4.8874 -6.6258 22 6 -1.9639 -6.3284 -8.1195 23 7 -1.5606 -6.9987 -9.1772 24 14 -3.6946 -6.5750 -7.4614 25 1 -4.6153 -5.6115 -8.1166 26 1 -4.1413 -7.9614 -7.7507 27 1 -3.7032 -6.3482 -5.9938 28 6 0.4793 -3.7659 -6.1498 29 1 -0.3634 -1.0202 -0.1238 30 1 -0.3634 0.4029 0.9454 31 1 -0.3634 0.6174 -0.8215 32 1 1.7660 -0.1669 2.1368 33 1 1.6029 -1.7254 1.2912 34 1 4.0061 0.1472 1.0993 35 1 3.9377 -1.3452 2.0666 36 1 5.0411 -1.7697 -0.1038 37 1 3.4987 -2.6531 -0.0051 38 1 3.6503 -1.5798 -2.1925 39 1 3.9928 -0.0050 -1.4310 40 1 -0.0963 -1.9822 -4.2757 41 1 3.3172 -2.1763 -5.2188 42 1 4.1780 -3.4007 -7.1708 43 1 2.6832 -4.8585 -8.4716 44 1 -2.1616 -7.6218 -9.6147 45 1 -0.5582 -3.8648 -5.8666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298925659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:18 Heat of formation + Delta-G solvation = -36.519798 kcal Electronic energy + Delta-G solvation = -28451.091674 eV Core-core repulsion = 24435.791712 eV Total energy + Delta-G solvation = -4015.299962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -41.42706 -39.78884 -38.63230 -37.76621 -36.60098 -34.53940 -33.04168 -32.92015 -32.27727 -29.61998 -28.79214 -27.88636 -25.68284 -25.26132 -24.32675 -22.69535 -21.93688 -21.51632 -20.56880 -19.75989 -18.15327 -17.97377 -17.19294 -16.74374 -16.17383 -15.63354 -15.49878 -15.26936 -15.15060 -14.80339 -14.48502 -14.27205 -14.13263 -13.94623 -13.87300 -13.61878 -13.21090 -13.04356 -12.76562 -12.53311 -12.39645 -12.13156 -11.89848 -11.68243 -11.58674 -11.34490 -11.28194 -11.10810 -11.00149 -10.91478 -10.82674 -10.47498 -10.23479 -9.91566 -9.54338 -8.96302 -8.87443 -8.80258 -7.83670 -7.24785 -6.48351 -4.08384 1.13026 2.07154 2.19930 2.34179 3.09975 3.12311 3.15218 3.17176 3.36447 3.93954 4.17866 4.45421 4.47637 4.52822 4.58393 4.77437 4.96380 5.03125 5.04630 5.16903 5.23225 5.34834 5.45491 5.49003 5.56440 5.61141 5.64634 5.71280 5.75766 5.88161 5.90553 6.00390 6.04853 6.06363 6.14863 6.21529 6.38567 6.51447 6.75818 6.86961 6.96693 7.05221 7.21783 7.35299 7.39495 7.67047 7.71779 7.94599 7.98998 8.97023 9.65215 10.69359 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.002793 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.896047 B =10021.879994 C =11246.218853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.139 3.861 3 H 0.076 0.924 4 C -0.131 4.131 5 C -0.123 4.123 6 C -0.131 4.131 7 C 0.044 3.956 8 N -0.576 5.576 9 C 0.511 3.489 10 O -0.513 6.513 11 C 0.504 3.496 12 O -0.492 6.492 13 N -0.630 5.630 14 C 0.172 3.828 15 C -0.208 4.208 16 C -0.062 4.062 17 C -0.196 4.196 18 C 0.169 3.831 19 O -0.174 6.174 20 C -0.394 4.394 21 H 0.091 0.909 22 C 0.041 3.959 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.252 4.252 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.161 0.839 39 H 0.063 0.937 40 H 0.419 0.581 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.271 0.729 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.207 13.444 18.276 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.169 4.169 5 C -0.161 4.161 6 C -0.169 4.169 7 C -0.076 4.076 8 N -0.310 5.310 9 C 0.294 3.706 10 O -0.390 6.390 11 C 0.287 3.713 12 O -0.369 6.369 13 N -0.274 5.274 14 C 0.079 3.921 15 C -0.229 4.229 16 C -0.081 4.081 17 C -0.216 4.216 18 C 0.114 3.886 19 O -0.077 6.077 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.273 4.273 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.177 0.823 39 H 0.081 0.919 40 H 0.257 0.743 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.291 13.057 17.965 23.705 hybrid contribution -1.306 0.041 0.599 1.438 sum 6.985 13.098 18.564 23.769 Atomic orbital electron populations 1.22242 0.92413 1.04032 1.01343 1.21434 0.95975 0.95253 0.83644 0.90638 1.22018 0.96281 1.01504 0.97141 1.21574 0.95469 1.00567 0.98449 1.21776 1.01360 0.99544 0.94200 1.23254 0.78080 1.02579 1.03713 1.48006 1.08306 1.55507 1.19176 1.19949 0.86082 0.81071 0.83534 1.90820 1.16925 1.55414 1.75800 1.20310 0.85998 0.81615 0.83355 1.90295 1.17819 1.52028 1.76718 1.43190 1.14237 1.53474 1.16498 1.17442 0.93912 0.93933 0.86809 1.20632 0.94338 1.07037 1.00887 1.20534 0.98380 0.95212 0.93973 1.20305 0.91505 1.05771 1.03988 1.19047 0.90395 0.89841 0.89304 1.84009 1.22760 1.56583 1.44307 1.21297 0.86134 1.25328 1.14236 0.89129 1.25281 0.99951 0.95218 0.95928 1.70035 1.36469 1.24548 1.18498 0.85724 0.80463 0.78181 0.79159 1.19821 1.20211 1.19178 1.20806 1.01073 1.04024 1.01440 0.91479 0.93328 0.90219 0.90616 0.91332 0.91841 0.91669 0.90541 0.91479 0.82328 0.91894 0.74327 0.85718 0.86399 0.86222 0.91950 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.61 37.16 0.28 -1.15 16 2 C 0.14 1.27 3.49 -67.60 -0.24 1.04 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -0.99 5.37 -26.61 -0.14 -1.14 16 5 C -0.12 -0.86 5.89 -26.69 -0.16 -1.01 16 6 C -0.13 -1.09 6.06 -26.83 -0.16 -1.25 16 7 C 0.04 0.44 6.25 -3.93 -0.02 0.41 16 8 N -0.58 -6.34 2.98 -166.03 -0.49 -6.83 16 9 C 0.51 6.76 7.54 -11.63 -0.09 6.68 16 10 O -0.51 -7.34 12.09 5.49 0.07 -7.27 16 11 C 0.50 7.41 7.56 -11.63 -0.09 7.32 16 12 O -0.49 -7.62 10.46 5.48 0.06 -7.57 16 13 N -0.63 -9.83 5.34 -10.31 -0.06 -9.89 16 14 C 0.17 3.19 6.36 -83.77 -0.53 2.66 16 15 C -0.21 -3.74 8.68 -39.33 -0.34 -4.08 16 16 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 17 C -0.20 -4.05 9.99 -39.35 -0.39 -4.44 16 18 C 0.17 3.99 6.64 -39.14 -0.26 3.73 16 19 O -0.17 -4.85 9.76 0.03 0.00 -4.85 16 20 C -0.39 -10.80 9.49 30.89 0.29 -10.51 16 21 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 23 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 24 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 C -0.25 -5.34 9.07 -39.19 -0.36 -5.70 16 29 H 0.07 0.79 6.87 -51.93 -0.36 0.44 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.92 6.63 -51.93 -0.34 0.57 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.16 1.88 3.76 -56.88 -0.21 1.67 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.42 5.89 8.28 -40.82 -0.34 5.56 16 41 H 0.13 2.09 6.07 -52.48 -0.32 1.78 16 42 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -30.54 360.83 -7.88 -38.42 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.93 Total: 9.37 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.70 Total: -7.94 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.21 Total: -40.90 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.12 Total: -19.68 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.54 -7.88 -38.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298925659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.898 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds