Wall clock time and date at job start Tue Mar 31 2020 17:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.70341 * 2 1 4 4 C 1.53193 * 109.58728 * 120.35787 * 2 1 3 5 5 C 1.53039 * 109.31498 * 174.42093 * 4 2 1 6 6 C 1.53046 * 109.53433 * 298.63716 * 5 4 2 7 7 C 1.52758 * 109.38787 * 61.23740 * 6 5 4 8 8 N 1.46928 * 109.58188 * 239.64360 * 2 1 3 9 9 C 1.34772 * 120.63533 * 6.58714 * 8 2 1 10 10 O 1.21357 * 119.99679 * 6.63509 * 9 8 2 11 11 C 1.49351 * 120.00201 * 186.63639 * 9 8 2 12 12 O 1.21374 * 120.00113 * 6.19700 * 11 9 8 13 13 N 1.34777 * 119.99832 * 186.19547 * 11 9 8 14 14 C 1.39731 * 119.99891 * 175.11453 * 13 11 9 15 15 C 1.39019 * 120.03987 * 330.99725 * 14 13 11 16 16 C 1.38138 * 120.06100 * 180.02562 * 15 14 13 17 17 C 1.38173 * 120.14490 * 359.95110 * 16 15 14 18 18 C 1.38920 * 120.08330 * 0.02874 * 17 16 15 19 19 O 1.35748 * 120.03173 * 179.97438 * 18 17 16 20 20 C 1.34838 * 117.00021 * 174.28353 * 19 18 17 21 21 H 1.07999 * 119.99807 * 5.06743 * 20 19 18 22 22 C 1.38653 * 120.00016 * 185.06689 * 20 19 18 23 23 N 1.31558 * 119.99858 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99927 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47339 * 90.00158 * 24 22 20 26 26 H 1.48501 * 109.46941 * 210.00032 * 24 22 20 27 27 H 1.48504 * 109.47273 * 329.99832 * 24 22 20 28 28 C 1.38756 * 119.93742 * 359.97438 * 18 17 16 29 29 H 1.09001 * 109.47491 * 173.08146 * 1 2 3 30 30 H 1.09002 * 109.47296 * 293.08038 * 1 2 3 31 31 H 1.08997 * 109.47542 * 53.07410 * 1 2 3 32 32 H 1.08996 * 109.49705 * 294.37289 * 4 2 1 33 33 H 1.09007 * 109.49619 * 54.46952 * 4 2 1 34 34 H 1.08993 * 109.45730 * 58.65343 * 5 4 2 35 35 H 1.08993 * 109.46288 * 178.63098 * 5 4 2 36 36 H 1.08998 * 109.49598 * 181.31732 * 6 5 4 37 37 H 1.08999 * 109.49523 * 301.37573 * 6 5 4 38 38 H 1.08994 * 109.50877 * 185.70310 * 7 6 5 39 39 H 1.09004 * 109.42874 * 65.42111 * 7 6 5 40 40 H 0.97001 * 120.00054 * 355.10872 * 13 11 9 41 41 H 1.08005 * 119.96752 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.92589 * 179.97438 * 16 15 14 43 43 H 1.08006 * 119.96100 * 180.02562 * 17 16 15 44 44 H 0.97002 * 119.99856 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.07164 * 179.72971 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8481 1.1701 6 6 3.9568 -1.6658 -0.0636 7 6 3.4643 -0.9520 -1.3212 8 7 2.0224 -0.6996 -1.1945 9 6 1.1672 -1.1069 -2.1532 10 8 -0.0036 -0.7930 -2.0952 11 6 1.6604 -1.9447 -3.2870 12 8 2.8035 -2.3527 -3.2877 13 7 0.8361 -2.2476 -4.3094 14 6 1.3246 -2.9440 -5.4179 15 6 2.6583 -2.8150 -5.7885 16 6 3.1416 -3.5029 -6.8846 17 6 2.3021 -4.3217 -7.6154 18 6 0.9684 -4.4553 -7.2502 19 8 0.1445 -5.2596 -7.9692 20 6 -1.1047 -5.4381 -7.4938 21 1 -1.4359 -4.8874 -6.6258 22 6 -1.9639 -6.3284 -8.1195 23 7 -1.5606 -6.9987 -9.1772 24 14 -3.6946 -6.5750 -7.4614 25 1 -4.6153 -5.6115 -8.1166 26 1 -4.1413 -7.9614 -7.7507 27 1 -3.7032 -6.3482 -5.9938 28 6 0.4793 -3.7659 -6.1498 29 1 -0.3634 -1.0202 -0.1238 30 1 -0.3634 0.4029 0.9454 31 1 -0.3634 0.6174 -0.8215 32 1 1.7660 -0.1669 2.1368 33 1 1.6029 -1.7254 1.2912 34 1 4.0061 0.1472 1.0993 35 1 3.9377 -1.3452 2.0666 36 1 5.0411 -1.7697 -0.1038 37 1 3.4987 -2.6531 -0.0051 38 1 3.6503 -1.5798 -2.1925 39 1 3.9928 -0.0050 -1.4310 40 1 -0.0963 -1.9822 -4.2757 41 1 3.3172 -2.1763 -5.2188 42 1 4.1780 -3.4007 -7.1708 43 1 2.6832 -4.8585 -8.4716 44 1 -2.1616 -7.6218 -9.6147 45 1 -0.5582 -3.8648 -5.8666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298925659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:15 Heat of formation + Delta-G solvation = -55.688562 kcal Electronic energy + Delta-G solvation = -28451.922894 eV Core-core repulsion = 24435.791712 eV Total energy + Delta-G solvation = -4016.131182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.52252 -41.10330 -40.14793 -38.67962 -38.19569 -35.91290 -34.25196 -33.84966 -33.68243 -31.16293 -30.40540 -28.70533 -27.40577 -26.50004 -25.22397 -23.78011 -23.50276 -22.55070 -21.69185 -20.81659 -19.82872 -19.35828 -18.60379 -17.82696 -17.35818 -16.91906 -16.79277 -16.61695 -16.34204 -16.03251 -15.71816 -15.62243 -15.46413 -15.19274 -14.92883 -14.65886 -14.56240 -14.25234 -14.03840 -13.62317 -13.59586 -13.37387 -13.27138 -13.03105 -12.76725 -12.61671 -12.49218 -12.17778 -12.12929 -12.04129 -11.90356 -11.63206 -11.42234 -11.38407 -11.10660 -10.76785 -9.94463 -9.74806 -9.41039 -8.93292 -8.48017 -6.16659 -0.09394 0.60281 0.72455 1.11919 1.35233 1.43847 1.51916 1.98652 2.16533 2.30633 2.81368 3.07273 3.14417 3.48484 3.76929 3.82065 3.95173 4.06984 4.09454 4.27196 4.28793 4.30515 4.39597 4.48089 4.52650 4.57500 4.69901 4.77570 4.89709 4.96477 4.99821 5.02897 5.06767 5.09758 5.14133 5.20234 5.24042 5.28799 5.41482 5.44508 5.56131 5.64997 5.66323 5.94539 6.00284 6.09665 6.18760 6.60571 6.78779 6.96673 7.75104 8.74731 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.002793 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.896047 B =10021.879994 C =11246.218853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.135 3.865 3 H 0.095 0.905 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.129 4.129 7 C 0.042 3.958 8 N -0.569 5.569 9 C 0.511 3.489 10 O -0.529 6.529 11 C 0.506 3.494 12 O -0.498 6.498 13 N -0.631 5.631 14 C 0.178 3.822 15 C -0.196 4.196 16 C -0.047 4.047 17 C -0.208 4.208 18 C 0.135 3.865 19 O -0.224 6.224 20 C -0.414 4.414 21 H 0.101 0.899 22 C -0.019 4.019 23 N -0.917 5.917 24 Si 1.015 2.985 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.255 1.255 28 C -0.259 4.259 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.142 0.858 39 H 0.083 0.917 40 H 0.425 0.575 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.122 0.878 44 H 0.273 0.727 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 15.668 21.344 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.033 3.967 3 H 0.113 0.887 4 C -0.166 4.166 5 C -0.157 4.157 6 C -0.167 4.167 7 C -0.078 4.078 8 N -0.302 5.302 9 C 0.292 3.708 10 O -0.407 6.407 11 C 0.290 3.710 12 O -0.375 6.375 13 N -0.276 5.276 14 C 0.084 3.916 15 C -0.217 4.217 16 C -0.065 4.065 17 C -0.228 4.228 18 C 0.084 3.916 19 O -0.130 6.130 20 C -0.490 4.490 21 H 0.118 0.882 22 C -0.217 4.217 23 N -0.555 5.555 24 Si 0.835 3.165 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.179 1.179 28 C -0.281 4.281 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.158 0.842 39 H 0.101 0.899 40 H 0.264 0.736 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.140 0.860 44 H 0.082 0.918 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.719 15.332 21.095 27.830 hybrid contribution -1.439 -0.439 -0.170 1.514 sum 8.281 14.893 20.925 26.985 Atomic orbital electron populations 1.22132 0.93220 1.02321 1.01849 1.21679 0.95385 0.96265 0.83349 0.88680 1.22013 0.96734 1.00797 0.97014 1.21569 0.94859 1.01169 0.98059 1.21770 1.02105 0.98642 0.94179 1.23256 0.77432 1.03387 1.03756 1.48165 1.08627 1.54477 1.18938 1.19680 0.86160 0.81294 0.83630 1.90835 1.17505 1.56237 1.76119 1.20701 0.85683 0.81306 0.83335 1.90328 1.18048 1.52095 1.77030 1.43188 1.14899 1.53380 1.16161 1.17479 0.93939 0.93081 0.87109 1.21022 0.94106 1.06110 1.00422 1.20979 0.99858 0.93046 0.92645 1.20570 0.90839 1.06660 1.04709 1.19587 0.91339 0.90285 0.90425 1.83975 1.23508 1.59093 1.46440 1.21778 0.86631 1.25830 1.14766 0.88185 1.26526 1.04495 0.94628 0.96079 1.70173 1.38452 1.26278 1.20628 0.84633 0.74552 0.78365 0.78983 1.18696 1.19583 1.17901 1.20808 1.01297 1.04582 1.01400 0.93756 0.91038 0.91958 0.88380 0.92818 0.90395 0.90495 0.89043 0.93292 0.84183 0.89924 0.73599 0.83677 0.82110 0.85993 0.91770 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.61 71.98 0.55 -1.99 16 2 C 0.13 2.09 3.49 44.97 0.16 2.25 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.13 -1.53 5.37 30.67 0.16 -1.37 16 5 C -0.12 -1.22 5.89 30.62 0.18 -1.04 16 6 C -0.13 -1.79 6.06 30.53 0.19 -1.60 16 7 C 0.04 0.71 6.25 86.22 0.54 1.25 16 8 N -0.57 -11.33 2.98 -797.55 -2.38 -13.71 16 9 C 0.51 12.91 7.54 87.24 0.66 13.57 16 10 O -0.53 -14.83 12.09 -3.27 -0.04 -14.87 16 11 C 0.51 14.23 7.56 87.24 0.66 14.89 16 12 O -0.50 -14.55 10.46 -3.32 -0.03 -14.58 16 13 N -0.63 -19.25 5.34 -304.89 -1.63 -20.88 16 14 C 0.18 6.48 6.36 38.20 0.24 6.73 16 15 C -0.20 -6.61 8.68 22.43 0.19 -6.41 16 16 C -0.05 -1.56 10.03 22.23 0.22 -1.34 16 17 C -0.21 -8.64 9.99 22.42 0.22 -8.42 16 18 C 0.14 6.62 6.64 22.56 0.15 6.77 16 19 O -0.22 -13.26 9.76 -22.80 -0.22 -13.48 16 20 C -0.41 -23.84 9.49 67.92 0.64 -23.19 16 21 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 22 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 23 N -0.92 -55.83 13.67 21.61 0.30 -55.53 16 24 Si 1.02 42.74 29.55 68.60 2.03 44.77 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 28 C -0.26 -11.27 9.07 22.52 0.20 -11.06 16 29 H 0.04 1.02 6.87 -2.39 -0.02 1.00 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.37 6.63 -2.39 -0.02 1.35 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.14 3.02 3.76 -80.79 -0.30 2.72 16 39 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.43 11.89 8.28 -92.71 -0.77 11.12 16 41 H 0.15 4.38 6.07 -2.91 -0.02 4.36 16 42 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 43 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.13 5.50 5.64 -2.91 -0.02 5.48 16 Total: -1.00 -70.25 360.83 3.44 -66.81 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.02 Total: 33.04 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.44 Total: -11.57 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -3.71 Total: -90.12 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.30 Total: -42.93 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -70.25 3.44 -66.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298925659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.124 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds