Wall clock time and date at job start Tue Mar 31 2020 17:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49849 * 2 1 4 4 C 1.53627 * 109.63430 * 239.89613 * 2 1 3 5 5 N 1.46925 * 108.54536 * 294.86875 * 4 2 1 6 6 C 1.34775 * 120.63321 * 126.36671 * 5 4 2 7 7 O 1.21587 * 119.99760 * 5.05818 * 6 5 4 8 8 N 1.34775 * 120.00256 * 185.05770 * 6 5 4 9 9 C 1.39957 * 119.99803 * 171.70885 * 8 6 5 10 10 C 1.39286 * 119.95013 * 25.70179 * 9 8 6 11 11 C 1.38483 * 120.43016 * 179.97438 * 10 9 8 12 12 C 1.37687 * 120.32344 * 359.96746 * 11 10 9 13 13 C 1.40738 * 119.88185 * 0.02941 * 12 11 10 14 14 C 1.41399 * 120.21187 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00113 * 41.23011 * 14 13 12 16 16 C 1.39940 * 120.00518 * 221.22676 * 14 13 12 17 17 N 1.30830 * 119.99373 * 25.80665 * 16 14 13 18 18 Si 1.86793 * 120.00407 * 205.80601 * 16 14 13 19 19 H 1.48505 * 109.47069 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47235 * 119.99861 * 18 16 14 21 21 H 1.48501 * 109.47269 * 239.99979 * 18 16 14 22 22 C 1.38235 * 119.94523 * 205.42424 * 9 8 6 23 23 C 1.46927 * 118.73651 * 306.09523 * 5 4 2 24 24 C 1.53192 * 108.77794 * 53.85971 * 23 5 4 25 25 C 1.53036 * 109.49167 * 120.06355 * 2 1 3 26 26 H 1.09004 * 109.44878 * 178.59976 * 25 2 1 27 27 C 1.50698 * 109.46202 * 298.56378 * 25 2 1 28 28 O 1.20822 * 120.00037 * 0.06876 * 27 25 2 29 29 O 1.34228 * 119.99899 * 180.02562 * 27 25 2 30 30 H 1.08999 * 109.47225 * 299.93818 * 1 2 3 31 31 H 1.09012 * 109.46922 * 59.93519 * 1 2 3 32 32 H 1.08997 * 109.47459 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.73637 * 175.13131 * 4 2 1 34 34 H 1.09002 * 109.66300 * 54.56296 * 4 2 1 35 35 H 0.96996 * 119.99614 * 351.43182 * 8 6 5 36 36 H 1.07999 * 119.78179 * 359.95024 * 10 9 8 37 37 H 1.08007 * 119.84104 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.05836 * 180.02562 * 12 11 10 39 39 H 0.97003 * 119.99894 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.15852 * 359.97438 * 22 9 8 41 41 H 1.09005 * 109.58505 * 173.64893 * 23 5 4 42 42 H 1.08994 * 109.58609 * 293.92770 * 23 5 4 43 43 H 1.09008 * 109.49551 * 65.31606 * 24 23 5 44 44 H 1.08999 * 109.50051 * 185.38119 * 24 23 5 45 45 H 0.96703 * 116.99919 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0462 -0.7257 -1.2518 5 7 1.6515 -2.1386 -1.1690 6 6 0.9747 -2.7228 -2.1775 7 8 0.7654 -2.1081 -3.2054 8 7 0.5301 -3.9883 -2.0466 9 6 -0.3181 -4.5357 -3.0160 10 6 -0.2896 -4.0479 -4.3203 11 6 -1.1241 -4.5826 -5.2875 12 6 -1.9914 -5.6038 -4.9700 13 6 -2.0312 -6.1069 -3.6562 14 6 -2.9187 -7.1559 -3.3226 15 1 -3.0580 -7.9826 -4.0035 16 6 -3.6167 -7.1230 -2.1101 17 7 -3.8666 -5.9772 -1.5302 18 14 -4.1915 -8.7149 -1.3198 19 1 -3.7868 -9.8637 -2.1694 20 1 -3.5750 -8.8512 0.0242 21 1 -5.6704 -8.6955 -1.1863 22 6 -1.1786 -5.5637 -2.6788 23 6 2.0139 -2.9040 0.0317 24 6 1.5029 -2.1554 1.2667 25 6 2.0407 -0.7227 1.2486 26 1 3.1304 -0.7441 1.2354 27 6 1.5677 0.0067 2.4796 28 8 0.8908 1.0014 2.3697 29 8 1.8979 -0.4493 3.6981 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1327 -0.6520 -1.2982 34 1 1.6089 -0.2758 -2.1431 35 1 0.8011 -4.5210 -1.2826 36 1 0.3874 -3.2472 -4.5789 37 1 -1.0939 -4.1974 -6.2961 38 1 -2.6400 -6.0179 -5.7277 39 1 -4.3501 -5.9544 -0.6896 40 1 -1.1979 -5.9459 -1.6689 41 1 1.5553 -3.8919 -0.0126 42 1 3.0976 -3.0065 0.0863 43 1 0.4131 -2.1351 1.2547 44 1 1.8474 -2.6625 2.1679 45 1 1.5710 0.0519 4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313505049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:02 Heat of formation + Delta-G solvation = -109.023271 kcal Electronic energy + Delta-G solvation = -28884.965996 eV Core-core repulsion = 24866.522048 eV Total energy + Delta-G solvation = -4018.443948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.15762 -41.31088 -39.58110 -38.45892 -37.10590 -36.03212 -35.22921 -34.34408 -32.80106 -31.52725 -30.20761 -28.51125 -27.22955 -26.98256 -24.15117 -23.60030 -23.12444 -22.62116 -21.22947 -19.90414 -19.39809 -19.16120 -18.99743 -17.58020 -17.49145 -16.98921 -16.86987 -16.63643 -16.40770 -16.15560 -15.65621 -15.35539 -14.99594 -14.83800 -14.58586 -14.48947 -14.25679 -14.00036 -13.93535 -13.64222 -13.17691 -13.05312 -12.93241 -12.81039 -12.74429 -12.63094 -12.47317 -12.24428 -12.08425 -11.88480 -11.73187 -11.62562 -11.56952 -11.29822 -11.16623 -10.83198 -10.55102 -9.71760 -9.23400 -8.69655 -8.53068 -6.32999 0.92077 1.03752 1.20900 1.41578 1.47607 1.56411 1.57003 2.06730 2.21826 2.27370 2.77122 2.88452 3.44804 3.58709 3.65073 3.89006 3.91388 4.13760 4.28743 4.32273 4.42295 4.53161 4.55510 4.66364 4.67697 4.76770 4.82134 4.84728 4.85602 5.03871 5.05586 5.08251 5.10898 5.13541 5.19139 5.30696 5.34042 5.56680 5.69656 5.74815 5.81323 6.00116 6.08440 6.15381 6.41556 6.67635 6.92304 6.98062 7.02076 7.05663 7.52928 8.42320 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.003257 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.195532 B = 8595.849513 C =10003.535202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 H 0.102 0.898 4 C 0.135 3.865 5 N -0.621 5.621 6 C 0.701 3.299 7 O -0.608 6.608 8 N -0.672 5.672 9 C 0.173 3.827 10 C -0.243 4.243 11 C -0.088 4.088 12 C -0.238 4.238 13 C 0.112 3.888 14 C -0.527 4.527 15 H 0.076 0.924 16 C 0.050 3.950 17 N -0.835 5.835 18 Si 0.969 3.031 19 H -0.258 1.258 20 H -0.263 1.263 21 H -0.272 1.272 22 C -0.204 4.204 23 C 0.107 3.893 24 C -0.124 4.124 25 C -0.069 4.069 26 H 0.148 0.852 27 C 0.487 3.513 28 O -0.544 6.544 29 O -0.509 6.509 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.285 0.715 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.054 0.946 44 H 0.116 0.884 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.720 8.118 13.365 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 H 0.120 0.880 4 C 0.013 3.987 5 N -0.358 5.358 6 C 0.404 3.596 7 O -0.488 6.488 8 N -0.320 5.320 9 C 0.078 3.922 10 C -0.264 4.264 11 C -0.107 4.107 12 C -0.258 4.258 13 C 0.109 3.891 14 C -0.557 4.557 15 H 0.094 0.906 16 C -0.164 4.164 17 N -0.461 5.461 18 Si 0.790 3.210 19 H -0.182 1.182 20 H -0.187 1.187 21 H -0.197 1.197 22 C -0.227 4.227 23 C -0.015 4.015 24 C -0.163 4.163 25 C -0.088 4.088 26 H 0.166 0.834 27 C 0.331 3.669 28 O -0.435 6.435 29 O -0.323 6.323 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.073 0.927 44 H 0.134 0.866 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 15.449 8.769 12.530 21.738 hybrid contribution -1.142 -0.359 1.045 1.588 sum 14.307 8.410 13.574 21.440 Atomic orbital electron populations 1.21957 0.96265 1.00760 1.01926 1.21421 0.95599 1.00220 0.92941 0.88022 1.21741 1.00902 0.78290 0.97804 1.47353 1.58496 1.12322 1.17630 1.16035 0.78575 0.81140 0.83890 1.90780 1.63684 1.65033 1.29338 1.42599 1.49792 1.13151 1.26503 1.17493 0.91706 0.94750 0.88243 1.21240 1.06979 1.06146 0.92047 1.20876 0.95491 0.95850 0.98479 1.21404 1.04523 1.01909 0.97990 1.17610 0.89772 0.90689 0.91023 1.19528 1.24592 1.07087 1.04521 0.90621 1.26514 0.93824 0.99991 0.96091 1.69945 1.31088 1.28403 1.16686 0.85382 0.78142 0.78779 0.78683 1.18190 1.18708 1.19678 1.20679 0.99456 1.03222 0.99304 1.21951 1.02708 0.94472 0.82396 1.21951 1.01124 0.93325 0.99861 1.21098 1.04586 0.95079 0.88022 0.83427 1.23639 0.75701 0.82041 0.85515 1.90695 1.37471 1.27723 1.87595 1.84489 1.72538 1.58356 1.16899 0.91512 0.94016 0.94418 0.87788 0.90718 0.74964 0.85051 0.86291 0.88289 0.90519 0.88914 0.89941 0.86866 0.92733 0.86562 0.71252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 8.41 71.98 0.61 -3.33 16 2 C -0.08 -1.49 2.36 -10.57 -0.02 -1.52 16 3 H 0.10 1.66 8.07 -2.39 -0.02 1.64 16 4 C 0.14 2.69 5.85 86.51 0.51 3.20 16 5 N -0.62 -14.70 2.40 -836.06 -2.01 -16.71 16 6 C 0.70 24.75 8.20 179.06 1.47 26.22 16 7 O -0.61 -26.44 12.61 -3.99 -0.05 -26.49 16 8 N -0.67 -24.70 5.27 -317.33 -1.67 -26.37 16 9 C 0.17 8.09 6.45 38.09 0.25 8.33 16 10 C -0.24 -11.76 8.85 22.58 0.20 -11.56 16 11 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 12 C -0.24 -12.30 9.79 22.75 0.22 -12.08 16 13 C 0.11 6.12 5.30 -21.31 -0.11 6.00 16 14 C -0.53 -28.82 8.90 23.46 0.21 -28.61 16 15 H 0.08 4.05 7.96 -2.91 -0.02 4.02 16 16 C 0.05 2.57 4.91 85.25 0.42 2.98 16 17 N -0.83 -44.90 12.72 21.83 0.28 -44.62 16 18 Si 0.97 38.47 29.63 68.60 2.03 40.50 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 C -0.20 -10.47 8.74 22.85 0.20 -10.27 16 23 C 0.11 1.59 6.42 86.36 0.55 2.15 16 24 C -0.12 -1.69 4.96 30.67 0.15 -1.54 16 25 C -0.07 -0.89 2.37 -11.51 -0.03 -0.92 16 26 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 27 C 0.49 7.69 7.34 71.24 0.52 8.21 16 28 O -0.54 -12.60 14.51 21.98 0.32 -12.28 16 29 O -0.51 -5.24 13.30 -51.40 -0.68 -5.92 16 30 H 0.07 1.81 5.64 -2.39 -0.01 1.80 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.04 1.10 5.97 -2.39 -0.01 1.09 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.95 7.04 -2.39 -0.02 1.93 16 35 H 0.41 12.14 6.26 -92.71 -0.58 11.56 16 36 H 0.13 6.37 5.37 -2.91 -0.02 6.36 16 37 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.09 4.72 7.68 -2.91 -0.02 4.70 16 41 H 0.08 1.29 5.58 -2.38 -0.01 1.28 16 42 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 1.07 6.34 -2.38 -0.02 1.06 16 44 H 0.12 1.03 8.08 -2.39 -0.02 1.01 16 45 H 0.43 1.37 9.10 -74.06 -0.67 0.70 16 Total: -1.00 -75.96 360.70 3.38 -72.58 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.20 Total: 36.01 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 5.36 Total: -16.70 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -3.40 Total: -87.71 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.42 Total: -44.69 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -75.96 3.38 -72.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313505049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.438 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds