Wall clock time and date at job start Tue Mar 31 2020 17:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34764 * 116.99932 * 2 1 4 4 O 1.21521 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.47385 * 120.00132 * 179.97438 * 3 2 1 6 6 C 1.39851 * 120.07151 * 0.24946 * 5 3 2 7 7 C 1.37115 * 119.92131 * 180.27037 * 6 5 3 8 8 C 1.39234 * 120.07585 * 359.45988 * 7 6 5 9 9 N 1.39014 * 119.92731 * 180.27388 * 8 7 6 10 10 C 1.46896 * 110.99771 * 55.69876 * 9 8 7 11 11 C 1.53240 * 109.33800 * 187.25716 * 10 9 8 12 12 N 1.47084 * 108.51665 * 306.16461 * 11 10 9 13 13 C 1.34781 * 120.88156 * 231.16207 * 12 11 10 14 14 O 1.21683 * 119.99941 * 185.71256 * 13 12 11 15 15 C 1.46370 * 119.99814 * 5.71292 * 13 12 11 16 16 H 1.08000 * 120.00317 * 8.46233 * 15 13 12 17 17 C 1.40047 * 119.99945 * 188.46391 * 15 13 12 18 18 N 1.30678 * 119.99842 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00076 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47588 * 59.99446 * 19 17 15 21 21 H 1.48499 * 109.47357 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46946 * 299.99408 * 19 17 15 23 23 C 1.47078 * 118.23865 * 51.18927 * 12 11 10 24 24 H 1.09002 * 109.78985 * 68.61770 * 23 12 11 25 25 C 1.52998 * 109.62872 * 189.10342 * 23 12 11 26 26 C 1.46898 * 110.99916 * 179.97438 * 9 8 7 27 27 C 1.39247 * 120.14573 * 0.29404 * 8 7 6 28 28 C 1.37106 * 120.07458 * 359.97438 * 27 8 7 29 29 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47311 * 300.00220 * 1 2 3 31 31 H 1.09003 * 109.47182 * 60.00575 * 1 2 3 32 32 H 1.07997 * 120.04154 * 0.02611 * 6 5 3 33 33 H 1.08003 * 119.96018 * 179.72740 * 7 6 5 34 34 H 1.08999 * 109.48969 * 307.20740 * 10 9 8 35 35 H 1.08995 * 109.50004 * 67.29115 * 10 9 8 36 36 H 1.08997 * 109.63247 * 186.45904 * 11 10 9 37 37 H 1.09001 * 109.79370 * 65.96480 * 11 10 9 38 38 H 0.97000 * 119.99792 * 180.02562 * 18 17 15 39 39 H 1.09008 * 109.47060 * 171.01109 * 25 23 12 40 40 H 1.08997 * 109.47048 * 291.00804 * 25 23 12 41 41 H 1.08996 * 109.47274 * 51.00824 * 25 23 12 42 42 H 1.09005 * 109.49465 * 292.70590 * 26 9 8 43 43 H 1.09002 * 109.49476 * 52.78483 * 26 9 8 44 44 H 1.08000 * 119.96025 * 180.02562 * 27 8 7 45 45 H 1.08003 * 120.03545 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2988 0.1061 -0.0042 7 6 5.6679 0.1814 0.0020 8 6 6.2984 1.4228 0.0016 9 7 7.6866 1.4956 0.0021 10 6 8.2531 0.7508 -1.1302 11 6 9.7787 0.7025 -0.9934 12 7 10.2778 2.0777 -0.8415 13 6 11.2741 2.5422 -1.6214 14 8 11.7454 3.6447 -1.4141 15 6 11.7891 1.7203 -2.7176 16 1 11.2848 0.8047 -2.9892 17 6 12.9359 2.1212 -3.4144 18 7 13.5458 3.2293 -3.0861 19 14 13.5928 1.0728 -4.8139 20 1 12.5558 0.9505 -5.8698 21 1 14.8060 1.7117 -5.3839 22 1 13.9384 -0.2773 -4.3009 23 6 9.6613 2.9323 0.1846 24 1 9.9204 2.5630 1.1769 25 6 10.1611 4.3695 0.0244 26 6 8.1405 2.8927 0.0009 27 6 5.5414 2.5916 0.0011 28 6 4.1721 2.5233 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 3.8104 -0.8572 -0.0087 33 1 6.2579 -0.7232 0.0028 34 1 7.8560 -0.2642 -1.1330 35 1 7.9871 1.2485 -2.0627 36 1 10.2123 0.2522 -1.8863 37 1 10.0523 0.1148 -0.1172 38 1 14.3399 3.5072 -3.5689 39 1 9.5877 5.0284 0.6766 40 1 11.2160 4.4195 0.2941 41 1 10.0356 4.6845 -1.0114 42 1 7.8760 3.3603 -0.9476 43 1 7.6615 3.4315 0.8185 44 1 6.0336 3.5529 0.0004 45 1 3.5856 3.4302 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331057092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:21 Heat of formation + Delta-G solvation = -59.093498 kcal Electronic energy + Delta-G solvation = -28322.126301 eV Core-core repulsion = 24305.847470 eV Total energy + Delta-G solvation = -4016.278831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.86470 -40.16326 -38.46797 -36.78555 -36.33745 -33.81383 -32.88535 -32.18451 -31.19986 -30.34187 -28.16794 -27.37844 -26.05251 -25.78082 -23.53853 -22.68511 -21.73996 -21.29332 -20.50940 -18.82118 -18.24582 -17.42228 -16.88125 -16.54381 -16.34634 -15.68357 -15.47467 -15.09477 -14.90827 -14.48151 -14.26596 -14.04765 -13.92415 -13.80606 -13.67140 -13.57464 -12.71274 -12.67048 -12.55933 -12.35680 -12.02828 -11.73448 -11.57070 -11.33717 -11.28789 -11.05860 -11.03931 -10.96212 -10.89628 -10.76881 -10.68598 -10.48057 -10.31720 -10.06928 -9.83945 -9.23291 -8.91937 -7.97088 -7.33180 -7.26214 -6.23052 -4.72736 0.56765 1.25951 2.36844 2.49968 3.09636 3.15618 3.16465 3.50437 3.79146 4.00917 4.37371 4.48023 4.54506 4.66157 4.75583 4.82123 4.89240 5.03705 5.14730 5.17637 5.22646 5.24998 5.44293 5.44647 5.53638 5.62720 5.65501 5.77642 5.85232 5.89348 5.93582 6.09627 6.13978 6.19467 6.22714 6.27776 6.40502 6.42741 6.51438 6.92849 6.94611 7.16684 7.27913 7.36889 7.51682 7.56454 8.04269 8.25302 8.94503 9.33473 10.49076 10.67328 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.002465 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.292776 B =11358.600730 C =12068.673304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.516 6.516 5 C -0.175 4.175 6 C -0.032 4.032 7 C -0.163 4.163 8 C 0.168 3.832 9 N -0.487 5.487 10 C 0.044 3.956 11 C 0.124 3.876 12 N -0.642 5.642 13 C 0.561 3.439 14 O -0.566 6.566 15 C -0.547 4.547 16 H 0.071 0.929 17 C 0.089 3.911 18 N -0.767 5.767 19 Si 0.905 3.095 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 C 0.156 3.844 24 H 0.056 0.944 25 C -0.124 4.124 26 C 0.039 3.961 27 C -0.192 4.192 28 C -0.020 4.020 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.270 0.730 39 H 0.021 0.979 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.138 0.862 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.903 -7.859 5.354 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.360 3.640 4 O -0.406 6.406 5 C -0.178 4.178 6 C -0.051 4.051 7 C -0.184 4.184 8 C 0.067 3.933 9 N -0.199 5.199 10 C -0.081 4.081 11 C -0.001 4.001 12 N -0.382 5.382 13 C 0.367 3.633 14 O -0.448 6.448 15 C -0.583 4.583 16 H 0.089 0.911 17 C -0.131 4.131 18 N -0.396 5.396 19 Si 0.730 3.270 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.192 1.192 23 C 0.051 3.949 24 H 0.074 0.926 25 C -0.182 4.182 26 C -0.089 4.089 27 C -0.213 4.213 28 C -0.039 4.039 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.156 0.844 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.385 -7.030 5.832 20.529 hybrid contribution -0.305 -0.299 -1.184 1.259 sum -18.691 -7.329 4.648 20.607 Atomic orbital electron populations 1.23253 0.76211 1.03636 1.02569 1.86554 1.23383 1.32916 1.84563 1.21199 0.89233 0.81237 0.72331 1.90829 1.66948 1.36032 1.46743 1.18900 0.88564 0.95055 1.15241 1.21122 0.93311 0.97712 0.92925 1.20674 0.94219 0.96756 1.06723 1.19438 0.88916 0.93726 0.91255 1.58644 1.04376 1.15294 1.41555 1.22812 0.97503 0.97920 0.89890 1.21560 0.89901 0.85974 1.02643 1.48380 1.39847 1.11664 1.38276 1.18169 0.77138 0.86601 0.81358 1.90616 1.59617 1.21915 1.72669 1.20929 1.12178 1.09032 1.16177 0.91143 1.25694 0.95937 0.94488 0.96968 1.69977 1.15122 1.18991 1.35484 0.86466 0.78628 0.80527 0.81366 1.19292 1.20548 1.19236 1.20933 0.88687 0.93143 0.92149 0.92637 1.22051 1.02113 0.92254 1.01755 1.22949 0.98069 0.86296 1.01541 1.21230 0.93652 0.98580 1.07806 1.20939 0.94087 0.96558 0.92270 0.88057 0.91908 0.91904 0.84537 0.84729 0.89642 0.92931 0.87930 0.92874 0.91962 0.96034 0.89792 0.91551 0.92862 0.89795 0.84386 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.66 9.80 -40.67 -0.40 -4.06 16 3 C 0.51 6.30 7.89 34.45 0.27 6.57 16 4 O -0.52 -7.47 16.13 -19.28 -0.31 -7.78 16 5 C -0.18 -2.06 5.88 -104.97 -0.62 -2.68 16 6 C -0.03 -0.33 9.58 -39.39 -0.38 -0.71 16 7 C -0.16 -1.79 9.09 -39.62 -0.36 -2.15 16 8 C 0.17 2.12 5.64 -83.86 -0.47 1.65 16 9 N -0.49 -6.85 4.66 -170.82 -0.80 -7.65 16 10 C 0.04 0.62 5.42 -3.70 -0.02 0.60 16 11 C 0.12 2.13 6.52 -3.60 -0.02 2.10 16 12 N -0.64 -13.63 3.01 -166.57 -0.50 -14.13 16 13 C 0.56 14.85 7.38 -12.99 -0.10 14.75 16 14 O -0.57 -16.67 10.79 5.20 0.06 -16.62 16 15 C -0.55 -14.41 8.84 -35.63 -0.31 -14.73 16 16 H 0.07 1.68 5.75 -52.49 -0.30 1.38 16 17 C 0.09 2.36 5.50 -17.36 -0.10 2.27 16 18 N -0.77 -21.92 11.86 55.55 0.66 -21.26 16 19 Si 0.91 19.25 29.56 -169.99 -5.02 14.22 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 C 0.16 2.89 3.65 -67.49 -0.25 2.64 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 C -0.12 -2.47 7.64 37.16 0.28 -2.19 16 26 C 0.04 0.59 3.57 -3.70 -0.01 0.57 16 27 C -0.19 -2.32 8.77 -39.62 -0.35 -2.67 16 28 C -0.02 -0.23 9.56 -39.39 -0.38 -0.61 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 1.14 7.60 -52.49 -0.40 0.74 16 33 H 0.13 1.27 7.13 -52.48 -0.37 0.90 16 34 H 0.09 0.97 6.63 -51.93 -0.34 0.63 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.81 5.39 -51.93 -0.28 1.53 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 39 H 0.02 0.35 8.13 -51.92 -0.42 -0.08 16 40 H 0.08 1.93 6.65 -51.93 -0.35 1.58 16 41 H 0.07 1.50 6.92 -51.93 -0.36 1.14 16 42 H 0.05 0.85 7.80 -51.93 -0.41 0.45 16 43 H 0.08 1.11 6.86 -51.93 -0.36 0.75 16 44 H 0.14 1.57 5.77 -52.49 -0.30 1.27 16 45 H 0.13 1.50 7.64 -52.48 -0.40 1.10 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -32.71 362.03 -8.56 -41.27 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.96 Total: 3.78 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.74 Total: 6.77 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.64 Total: -43.04 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.65 Total: -28.46 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.71 -8.56 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331057092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.825 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds