Wall clock time and date at job start Tue Mar 31 2020 17:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34764 * 116.99932 * 2 1 4 4 O 1.21521 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.47385 * 120.00132 * 179.97438 * 3 2 1 6 6 C 1.39851 * 120.07151 * 0.24946 * 5 3 2 7 7 C 1.37115 * 119.92131 * 180.27037 * 6 5 3 8 8 C 1.39234 * 120.07585 * 359.45988 * 7 6 5 9 9 N 1.39014 * 119.92731 * 180.27388 * 8 7 6 10 10 C 1.46896 * 110.99771 * 55.69876 * 9 8 7 11 11 C 1.53240 * 109.33800 * 187.25716 * 10 9 8 12 12 N 1.47084 * 108.51665 * 306.16461 * 11 10 9 13 13 C 1.34781 * 120.88156 * 231.16207 * 12 11 10 14 14 O 1.21683 * 119.99941 * 185.71256 * 13 12 11 15 15 C 1.46370 * 119.99814 * 5.71292 * 13 12 11 16 16 H 1.08000 * 120.00317 * 8.46233 * 15 13 12 17 17 C 1.40047 * 119.99945 * 188.46391 * 15 13 12 18 18 N 1.30678 * 119.99842 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00076 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47588 * 59.99446 * 19 17 15 21 21 H 1.48499 * 109.47357 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46946 * 299.99408 * 19 17 15 23 23 C 1.47078 * 118.23865 * 51.18927 * 12 11 10 24 24 H 1.09002 * 109.78985 * 68.61770 * 23 12 11 25 25 C 1.52998 * 109.62872 * 189.10342 * 23 12 11 26 26 C 1.46898 * 110.99916 * 179.97438 * 9 8 7 27 27 C 1.39247 * 120.14573 * 0.29404 * 8 7 6 28 28 C 1.37106 * 120.07458 * 359.97438 * 27 8 7 29 29 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47311 * 300.00220 * 1 2 3 31 31 H 1.09003 * 109.47182 * 60.00575 * 1 2 3 32 32 H 1.07997 * 120.04154 * 0.02611 * 6 5 3 33 33 H 1.08003 * 119.96018 * 179.72740 * 7 6 5 34 34 H 1.08999 * 109.48969 * 307.20740 * 10 9 8 35 35 H 1.08995 * 109.50004 * 67.29115 * 10 9 8 36 36 H 1.08997 * 109.63247 * 186.45904 * 11 10 9 37 37 H 1.09001 * 109.79370 * 65.96480 * 11 10 9 38 38 H 0.97000 * 119.99792 * 180.02562 * 18 17 15 39 39 H 1.09008 * 109.47060 * 171.01109 * 25 23 12 40 40 H 1.08997 * 109.47048 * 291.00804 * 25 23 12 41 41 H 1.08996 * 109.47274 * 51.00824 * 25 23 12 42 42 H 1.09005 * 109.49465 * 292.70590 * 26 9 8 43 43 H 1.09002 * 109.49476 * 52.78483 * 26 9 8 44 44 H 1.08000 * 119.96025 * 180.02562 * 27 8 7 45 45 H 1.08003 * 120.03545 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2988 0.1061 -0.0042 7 6 5.6679 0.1814 0.0020 8 6 6.2984 1.4228 0.0016 9 7 7.6866 1.4956 0.0021 10 6 8.2531 0.7508 -1.1302 11 6 9.7787 0.7025 -0.9934 12 7 10.2778 2.0777 -0.8415 13 6 11.2741 2.5422 -1.6214 14 8 11.7454 3.6447 -1.4141 15 6 11.7891 1.7203 -2.7176 16 1 11.2848 0.8047 -2.9892 17 6 12.9359 2.1212 -3.4144 18 7 13.5458 3.2293 -3.0861 19 14 13.5928 1.0728 -4.8139 20 1 12.5558 0.9505 -5.8698 21 1 14.8060 1.7117 -5.3839 22 1 13.9384 -0.2773 -4.3009 23 6 9.6613 2.9323 0.1846 24 1 9.9204 2.5630 1.1769 25 6 10.1611 4.3695 0.0244 26 6 8.1405 2.8927 0.0009 27 6 5.5414 2.5916 0.0011 28 6 4.1721 2.5233 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 3.8104 -0.8572 -0.0087 33 1 6.2579 -0.7232 0.0028 34 1 7.8560 -0.2642 -1.1330 35 1 7.9871 1.2485 -2.0627 36 1 10.2123 0.2522 -1.8863 37 1 10.0523 0.1148 -0.1172 38 1 14.3399 3.5072 -3.5689 39 1 9.5877 5.0284 0.6766 40 1 11.2160 4.4195 0.2941 41 1 10.0356 4.6845 -1.0114 42 1 7.8760 3.3603 -0.9476 43 1 7.6615 3.4315 0.8185 44 1 6.0336 3.5529 0.0004 45 1 3.5856 3.4302 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331057092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:20 Heat of formation + Delta-G solvation = -79.781367 kcal Electronic energy + Delta-G solvation = -28323.023395 eV Core-core repulsion = 24305.847470 eV Total energy + Delta-G solvation = -4017.175924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.84002 -41.23418 -39.87702 -38.03403 -37.40133 -35.39291 -34.67216 -33.74549 -32.18725 -31.40047 -29.37419 -28.36498 -27.93742 -26.99630 -24.60593 -23.88959 -22.86331 -22.71867 -21.53117 -20.45666 -19.15674 -18.51047 -18.23336 -17.77246 -17.36251 -17.24686 -16.68410 -16.55988 -16.15696 -15.83620 -15.63434 -15.25586 -15.05420 -14.80195 -14.55375 -14.49689 -14.44197 -13.77521 -13.66540 -13.39669 -13.27304 -13.12093 -13.01784 -12.93502 -12.84485 -12.63703 -12.49189 -12.21775 -12.10374 -12.05124 -11.95262 -11.80835 -11.68497 -11.63868 -10.92939 -10.86028 -10.08924 -9.29900 -9.09722 -8.91286 -8.20486 -6.78792 -0.35480 0.39952 1.41499 1.43856 1.44337 1.54818 1.72753 2.23888 2.45875 2.51127 2.78878 2.86927 3.61215 3.69034 3.80515 3.82897 3.91572 3.96073 4.13496 4.23397 4.28984 4.32556 4.34836 4.34953 4.43852 4.48425 4.54736 4.64711 4.65279 4.71901 4.79322 4.88508 5.00073 5.03584 5.10183 5.17388 5.29276 5.30190 5.36145 5.41603 5.57704 5.61278 5.75224 5.86235 6.15522 6.18903 6.43682 6.68223 6.92675 7.46593 8.52651 8.71570 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.002465 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.292776 B =11358.600730 C =12068.673304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.514 3.486 4 O -0.545 6.545 5 C -0.183 4.183 6 C -0.022 4.022 7 C -0.156 4.156 8 C 0.152 3.848 9 N -0.487 5.487 10 C 0.053 3.947 11 C 0.120 3.880 12 N -0.647 5.647 13 C 0.544 3.456 14 O -0.610 6.610 15 C -0.570 4.570 16 H 0.092 0.908 17 C 0.032 3.968 18 N -0.822 5.822 19 Si 0.989 3.011 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.252 1.252 23 C 0.152 3.848 24 H 0.062 0.938 25 C -0.110 4.110 26 C 0.052 3.948 27 C -0.195 4.195 28 C -0.027 4.027 29 H 0.135 0.865 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.123 0.877 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.272 0.728 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.030 0.970 42 H 0.041 0.959 43 H 0.108 0.892 44 H 0.140 0.860 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.974 -10.931 5.341 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.362 3.638 4 O -0.438 6.438 5 C -0.185 4.185 6 C -0.041 4.041 7 C -0.176 4.176 8 C 0.052 3.948 9 N -0.199 5.199 10 C -0.072 4.072 11 C -0.004 4.004 12 N -0.385 5.385 13 C 0.350 3.650 14 O -0.496 6.496 15 C -0.607 4.607 16 H 0.110 0.890 17 C -0.183 4.183 18 N -0.452 5.452 19 Si 0.809 3.191 20 H -0.181 1.181 21 H -0.205 1.205 22 H -0.176 1.176 23 C 0.048 3.952 24 H 0.080 0.920 25 C -0.168 4.168 26 C -0.075 4.075 27 C -0.216 4.216 28 C -0.046 4.046 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.141 0.859 35 H 0.056 0.944 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.126 0.874 44 H 0.158 0.842 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.524 -10.158 5.848 23.635 hybrid contribution 0.177 0.639 -1.091 1.276 sum -20.347 -9.520 4.757 22.962 Atomic orbital electron populations 1.23576 0.74425 1.05893 1.02499 1.86539 1.25120 1.31634 1.83945 1.21322 0.89448 0.81409 0.71620 1.90816 1.67601 1.37096 1.48261 1.19074 0.88656 0.95612 1.15142 1.21354 0.93042 0.98183 0.91529 1.20900 0.94528 0.96740 1.05465 1.19515 0.87998 0.94686 0.92597 1.58661 1.05455 1.14161 1.41628 1.22724 0.95155 0.99868 0.89469 1.21733 0.92083 0.83671 1.02865 1.48248 1.38866 1.13573 1.37787 1.18520 0.78041 0.86249 0.82204 1.90597 1.61441 1.23607 1.73959 1.21466 1.12746 1.09877 1.16597 0.89043 1.26875 0.95980 0.95636 0.99815 1.70159 1.15999 1.21525 1.37503 0.85190 0.77837 0.78708 0.77347 1.18120 1.20450 1.17594 1.21048 0.90998 0.91608 0.91596 0.91976 1.21759 1.00445 0.94421 1.00175 1.22717 0.95242 0.87702 1.01854 1.21276 0.93770 0.98765 1.07775 1.20992 0.94061 0.96966 0.92568 0.84653 0.91969 0.92078 0.82073 0.82588 0.85929 0.94356 0.88688 0.91540 0.91819 0.92166 0.93655 0.95046 0.94118 0.87425 0.84194 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.40 9.80 -56.75 -0.56 -6.96 16 3 C 0.51 11.75 7.89 70.23 0.55 12.30 16 4 O -0.55 -15.37 16.13 19.77 0.32 -15.05 16 5 C -0.18 -3.90 5.88 -20.09 -0.12 -4.02 16 6 C -0.02 -0.38 9.58 22.40 0.21 -0.17 16 7 C -0.16 -2.82 9.09 22.25 0.20 -2.62 16 8 C 0.15 3.44 5.64 38.49 0.22 3.65 16 9 N -0.49 -12.53 4.66 -694.35 -3.23 -15.76 16 10 C 0.05 1.38 5.42 86.38 0.47 1.85 16 11 C 0.12 3.97 6.52 86.35 0.56 4.53 16 12 N -0.65 -27.84 3.01 -799.13 -2.40 -30.24 16 13 C 0.54 29.94 7.38 86.36 0.64 30.57 16 14 O -0.61 -38.15 10.79 -4.29 -0.05 -38.19 16 15 C -0.57 -30.65 8.84 24.83 0.22 -30.43 16 16 H 0.09 4.34 5.75 -2.91 -0.02 4.32 16 17 C 0.03 1.72 5.50 85.30 0.47 2.19 16 18 N -0.82 -48.94 11.86 21.84 0.26 -48.68 16 19 Si 0.99 39.64 29.56 68.60 2.03 41.67 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 23 C 0.15 5.64 3.65 44.96 0.16 5.81 16 24 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 25 C -0.11 -4.57 7.64 71.98 0.55 -4.02 16 26 C 0.05 1.52 3.57 86.39 0.31 1.83 16 27 C -0.20 -4.38 8.77 22.25 0.20 -4.19 16 28 C -0.03 -0.60 9.56 22.40 0.21 -0.38 16 29 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.16 1.97 7.60 -2.91 -0.02 1.95 16 33 H 0.16 2.15 7.13 -2.91 -0.02 2.13 16 34 H 0.12 2.28 6.63 -2.39 -0.02 2.27 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 3.26 5.39 -2.39 -0.01 3.25 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 39 H 0.06 1.96 8.13 -2.38 -0.02 1.95 16 40 H 0.04 2.20 6.65 -2.39 -0.02 2.19 16 41 H 0.03 1.49 6.92 -2.39 -0.02 1.47 16 42 H 0.04 1.29 7.80 -2.38 -0.02 1.27 16 43 H 0.11 2.62 6.86 -2.39 -0.02 2.60 16 44 H 0.14 3.01 5.77 -2.91 -0.02 2.99 16 45 H 0.13 2.93 7.64 -2.91 -0.02 2.91 16 Total: -1.00 -75.47 362.03 3.44 -72.03 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.02 Total: 22.75 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.06 Total: 18.44 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -5.38 Total: -94.69 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -0.28 Total: -60.20 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -75.47 3.44 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331057092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.754 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds