Wall clock time and date at job start Tue Mar 31 2020 16:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47164 * 2 1 4 4 O 1.21282 * 120.00381 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00094 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99824 * 0.02562 * 5 3 2 7 7 C 1.39287 * 120.00192 * 179.97438 * 5 3 2 8 8 C 1.38852 * 120.17056 * 270.28144 * 7 5 3 9 9 C 1.38018 * 120.07151 * 180.30275 * 8 7 5 10 10 C 1.38566 * 120.40515 * 359.69117 * 9 8 7 11 11 C 1.37803 * 120.32745 * 0.02562 * 10 9 8 12 12 C 1.39676 * 119.92193 * 0.02562 * 11 10 9 13 13 C 1.47527 * 120.19737 * 179.97438 * 12 11 10 14 14 O 1.21590 * 119.99813 * 155.19988 * 13 12 11 15 15 N 1.34777 * 119.99730 * 335.19748 * 13 12 11 16 16 C 1.47581 * 134.48906 * 174.71034 * 15 13 12 17 17 C 1.53946 * 86.11567 * 155.36151 * 16 15 13 18 18 O 1.42902 * 113.73952 * 269.15320 * 17 16 15 19 19 C 1.50693 * 113.74028 * 137.95306 * 17 16 15 20 20 H 1.08003 * 120.00204 * 1.92424 * 19 17 16 21 21 C 1.37886 * 120.00010 * 181.92425 * 19 17 16 22 22 N 1.31515 * 119.99395 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00085 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46970 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46883 * 299.99844 * 23 21 19 26 26 H 1.48499 * 109.47318 * 59.99807 * 23 21 19 27 27 C 1.47803 * 134.45948 * 354.58302 * 15 13 12 28 28 H 1.09000 * 109.47069 * 299.99764 * 1 2 3 29 29 H 1.09003 * 109.46958 * 60.00233 * 1 2 3 30 30 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46959 * 239.99471 * 2 1 3 32 32 H 1.09000 * 109.47350 * 120.00104 * 2 1 3 33 33 H 1.08996 * 109.47244 * 269.99546 * 6 5 3 34 34 H 1.08999 * 109.47298 * 30.00326 * 6 5 3 35 35 H 1.09008 * 109.47148 * 150.00063 * 6 5 3 36 36 H 1.08003 * 119.96268 * 359.97438 * 8 7 5 37 37 H 1.07999 * 119.79912 * 179.71856 * 9 8 7 38 38 H 1.07996 * 119.83645 * 180.02562 * 10 9 8 39 39 H 1.08004 * 120.03527 * 179.97438 * 11 10 9 40 40 H 1.09002 * 113.76960 * 41.06037 * 16 15 13 41 41 H 1.08993 * 113.77156 * 269.66515 * 16 15 13 42 42 H 0.96699 * 114.00052 * 178.07585 * 18 17 16 43 43 H 0.97008 * 119.99442 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.77161 * 90.37464 * 27 15 13 45 45 H 1.09000 * 113.83649 * 318.91221 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3094 0.5535 0.0005 7 6 3.8218 2.9802 0.0000 8 6 4.0494 3.6394 -1.2007 9 6 4.5155 4.9385 -1.1989 10 6 4.7535 5.5965 -0.0029 11 6 4.5276 4.9601 1.1984 12 6 4.0571 3.6451 1.2125 13 6 3.8138 2.9578 2.4950 14 8 3.0168 2.0413 2.5519 15 7 4.4750 3.3458 3.6035 16 6 4.4148 2.9683 5.0289 17 6 5.8734 3.4537 5.1110 18 8 6.8361 2.4280 4.8597 19 6 6.1777 4.2538 6.3513 20 1 5.4101 4.4104 7.0947 21 6 7.4361 4.7859 6.5370 22 7 8.3706 4.5956 5.6314 23 14 7.8135 5.7771 8.0747 24 1 9.2255 6.2352 8.0342 25 1 6.9127 6.9560 8.1371 26 1 7.6021 4.9285 9.2749 27 6 5.5531 4.3187 3.8785 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.5452 0.2771 1.0281 34 1 3.8693 -0.3008 -0.5137 35 1 5.2222 0.8558 -0.5129 36 1 3.8667 3.1332 -2.1371 37 1 4.6954 5.4455 -2.1354 38 1 5.1177 6.6132 -0.0122 39 1 4.7151 5.4773 2.1278 40 1 4.2981 1.8974 5.1953 41 1 3.7183 3.5692 5.6135 42 1 7.7528 2.7350 4.8813 43 1 9.2559 4.9702 5.7619 44 1 5.1917 5.3172 4.1244 45 1 6.3437 4.3239 3.1281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331906532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:47 Heat of formation + Delta-G solvation = -42.840559 kcal Electronic energy + Delta-G solvation = -29495.729527 eV Core-core repulsion = 25480.155476 eV Total energy + Delta-G solvation = -4015.574051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.67134 -39.38029 -38.26662 -37.02266 -35.39132 -33.96294 -32.79969 -32.25518 -31.35819 -30.08882 -28.42410 -26.65800 -25.57459 -25.38454 -24.74245 -23.21748 -21.99516 -20.21348 -19.33072 -18.57025 -17.51873 -17.18919 -16.75754 -16.51990 -16.09410 -15.66966 -15.18577 -14.95679 -14.70944 -14.40579 -14.20387 -13.91805 -13.63349 -13.45276 -13.19958 -12.68126 -12.64987 -12.59896 -12.48460 -12.36665 -12.17904 -11.95740 -11.78572 -11.62029 -11.60902 -11.32859 -11.12259 -11.09345 -11.05493 -10.56593 -10.32872 -9.72423 -9.65108 -9.27532 -8.90682 -8.80552 -8.75029 -8.66886 -8.41571 -7.84006 -6.42190 -4.52614 1.00778 1.32915 2.82856 3.10343 3.14360 3.20306 3.21778 3.23823 3.50724 3.96118 4.16407 4.70265 4.78573 4.86013 4.90719 4.99615 5.02771 5.06989 5.15647 5.29918 5.38308 5.49480 5.53615 5.56144 5.59374 5.76235 5.79250 5.88025 5.92616 5.97519 6.15418 6.23105 6.26273 6.32211 6.37870 6.45353 6.46889 6.60780 6.62132 6.69061 7.04105 7.07556 7.44087 7.59787 7.78868 8.39816 8.43600 8.50460 8.75249 9.18560 9.38724 10.64401 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.003518 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.916741 B = 7956.742003 C = 8818.527209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.536 3.464 4 O -0.533 6.533 5 N -0.572 5.572 6 C 0.083 3.917 7 C 0.189 3.811 8 C -0.123 4.123 9 C -0.097 4.097 10 C -0.123 4.123 11 C -0.081 4.081 12 C -0.112 4.112 13 C 0.571 3.429 14 O -0.549 6.549 15 N -0.627 5.627 16 C 0.114 3.886 17 C 0.241 3.759 18 O -0.572 6.572 19 C -0.539 4.539 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.907 3.093 24 H -0.285 1.285 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.076 3.924 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.391 0.609 43 H 0.273 0.727 44 H 0.082 0.918 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -3.315 -13.403 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.178 4.178 3 C 0.326 3.674 4 O -0.408 6.408 5 N -0.303 5.303 6 C -0.059 4.059 7 C 0.097 3.903 8 C -0.142 4.142 9 C -0.115 4.115 10 C -0.141 4.141 11 C -0.100 4.100 12 C -0.116 4.116 13 C 0.360 3.640 14 O -0.429 6.429 15 N -0.361 5.361 16 C -0.008 4.008 17 C 0.199 3.801 18 O -0.384 6.384 19 C -0.577 4.577 20 H 0.089 0.911 21 C -0.129 4.129 22 N -0.537 5.537 23 Si 0.734 3.266 24 H -0.210 1.210 25 H -0.199 1.199 26 H -0.198 1.198 27 C -0.046 4.046 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.246 0.754 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.842 -3.738 -13.619 15.283 hybrid contribution 1.004 1.043 0.837 1.672 sum -4.838 -2.695 -12.782 13.930 Atomic orbital electron populations 1.21520 0.93190 1.01267 1.03279 1.21602 0.98379 0.93793 1.04015 1.20575 0.80762 0.91815 0.74264 1.90664 1.54573 1.46761 1.48786 1.44952 1.06436 1.04085 1.74798 1.21839 0.92661 0.88533 1.02833 1.17355 0.96412 0.84970 0.91538 1.21210 1.00756 0.95325 0.96914 1.21134 0.97970 0.94073 0.98361 1.21151 1.00590 1.00344 0.92033 1.21572 0.95610 0.93463 0.99351 1.20368 1.02458 0.95302 0.93486 1.17690 0.80182 0.83335 0.82744 1.90683 1.36347 1.30129 1.85702 1.50141 1.37560 1.41279 1.07076 1.23447 0.98251 1.00690 0.78373 1.19823 0.84990 0.84555 0.90719 1.86060 1.21037 1.37243 1.94020 1.21467 0.97794 1.32856 1.05586 0.91101 1.25061 0.95757 0.95282 0.96843 1.69397 1.04225 1.45627 1.34473 0.86399 0.77446 0.80146 0.82601 1.21001 1.19889 1.19847 1.24408 0.86765 0.93820 0.99630 0.91842 0.92278 0.92252 0.89370 0.88527 0.91825 0.90603 0.91110 0.85592 0.85409 0.85216 0.84517 0.91121 0.89599 0.75392 0.91629 0.90009 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.20 37.16 0.34 -1.25 16 2 C -0.14 -1.68 4.97 -27.88 -0.14 -1.82 16 3 C 0.54 8.97 6.20 -10.99 -0.07 8.90 16 4 O -0.53 -10.95 15.95 5.56 0.09 -10.86 16 5 N -0.57 -9.04 1.69 -120.60 -0.20 -9.24 16 6 C 0.08 1.01 10.23 59.85 0.61 1.62 16 7 C 0.19 3.17 4.42 -83.48 -0.37 2.80 16 8 C -0.12 -1.68 9.96 -39.43 -0.39 -2.07 16 9 C -0.10 -1.16 10.03 -39.54 -0.40 -1.56 16 10 C -0.12 -1.60 10.02 -39.62 -0.40 -2.00 16 11 C -0.08 -1.31 8.82 -39.20 -0.35 -1.65 16 12 C -0.11 -2.09 5.83 -104.81 -0.61 -2.70 16 13 C 0.57 12.30 7.74 -12.47 -0.10 12.20 16 14 O -0.55 -12.83 15.09 5.29 0.08 -12.75 16 15 N -0.63 -13.46 3.58 -179.36 -0.64 -14.11 16 16 C 0.11 2.49 8.23 -2.97 -0.02 2.47 16 17 C 0.24 5.66 1.40 -90.85 -0.13 5.53 16 18 O -0.57 -14.39 13.48 -35.23 -0.48 -14.86 16 19 C -0.54 -13.25 8.61 -34.44 -0.30 -13.55 16 20 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 21 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 22 N -0.90 -22.13 11.20 55.43 0.62 -21.50 16 23 Si 0.91 19.11 29.54 -169.99 -5.02 14.09 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 27 C 0.08 1.61 5.69 -2.84 -0.02 1.60 16 28 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.78 7.40 -51.93 -0.38 0.40 16 32 H 0.10 1.17 8.11 -51.93 -0.42 0.75 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.66 6.44 -51.93 -0.33 0.32 16 35 H 0.07 0.75 8.05 -51.92 -0.42 0.34 16 36 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.14 2.20 5.55 -52.48 -0.29 1.91 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 42 H 0.39 9.91 6.60 45.56 0.30 10.21 16 43 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.08 1.64 7.71 -51.93 -0.40 1.24 16 45 H 0.07 1.51 7.86 -51.93 -0.41 1.10 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -31.58 375.33 -8.02 -39.60 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.70 Total: 13.77 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -2.42 Total: 10.22 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.22 Total: -44.85 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.31 Total: -38.48 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.58 -8.02 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331906532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.245 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds