Wall clock time and date at job start Tue Mar 31 2020 16:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47164 * 2 1 4 4 O 1.21282 * 120.00381 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00094 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99824 * 0.02562 * 5 3 2 7 7 C 1.39287 * 120.00192 * 179.97438 * 5 3 2 8 8 C 1.38852 * 120.17056 * 270.28144 * 7 5 3 9 9 C 1.38018 * 120.07151 * 180.30275 * 8 7 5 10 10 C 1.38566 * 120.40515 * 359.69117 * 9 8 7 11 11 C 1.37803 * 120.32745 * 0.02562 * 10 9 8 12 12 C 1.39676 * 119.92193 * 0.02562 * 11 10 9 13 13 C 1.47527 * 120.19737 * 179.97438 * 12 11 10 14 14 O 1.21590 * 119.99813 * 155.19988 * 13 12 11 15 15 N 1.34777 * 119.99730 * 335.19748 * 13 12 11 16 16 C 1.47581 * 134.48906 * 174.71034 * 15 13 12 17 17 C 1.53946 * 86.11567 * 155.36151 * 16 15 13 18 18 O 1.42902 * 113.73952 * 269.15320 * 17 16 15 19 19 C 1.50693 * 113.74028 * 137.95306 * 17 16 15 20 20 H 1.08003 * 120.00204 * 1.92424 * 19 17 16 21 21 C 1.37886 * 120.00010 * 181.92425 * 19 17 16 22 22 N 1.31515 * 119.99395 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00085 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46970 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46883 * 299.99844 * 23 21 19 26 26 H 1.48499 * 109.47318 * 59.99807 * 23 21 19 27 27 C 1.47803 * 134.45948 * 354.58302 * 15 13 12 28 28 H 1.09000 * 109.47069 * 299.99764 * 1 2 3 29 29 H 1.09003 * 109.46958 * 60.00233 * 1 2 3 30 30 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46959 * 239.99471 * 2 1 3 32 32 H 1.09000 * 109.47350 * 120.00104 * 2 1 3 33 33 H 1.08996 * 109.47244 * 269.99546 * 6 5 3 34 34 H 1.08999 * 109.47298 * 30.00326 * 6 5 3 35 35 H 1.09008 * 109.47148 * 150.00063 * 6 5 3 36 36 H 1.08003 * 119.96268 * 359.97438 * 8 7 5 37 37 H 1.07999 * 119.79912 * 179.71856 * 9 8 7 38 38 H 1.07996 * 119.83645 * 180.02562 * 10 9 8 39 39 H 1.08004 * 120.03527 * 179.97438 * 11 10 9 40 40 H 1.09002 * 113.76960 * 41.06037 * 16 15 13 41 41 H 1.08993 * 113.77156 * 269.66515 * 16 15 13 42 42 H 0.96699 * 114.00052 * 178.07585 * 18 17 16 43 43 H 0.97008 * 119.99442 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.77161 * 90.37464 * 27 15 13 45 45 H 1.09000 * 113.83649 * 318.91221 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3094 0.5535 0.0005 7 6 3.8218 2.9802 0.0000 8 6 4.0494 3.6394 -1.2007 9 6 4.5155 4.9385 -1.1989 10 6 4.7535 5.5965 -0.0029 11 6 4.5276 4.9601 1.1984 12 6 4.0571 3.6451 1.2125 13 6 3.8138 2.9578 2.4950 14 8 3.0168 2.0413 2.5519 15 7 4.4750 3.3458 3.6035 16 6 4.4148 2.9683 5.0289 17 6 5.8734 3.4537 5.1110 18 8 6.8361 2.4280 4.8597 19 6 6.1777 4.2538 6.3513 20 1 5.4101 4.4104 7.0947 21 6 7.4361 4.7859 6.5370 22 7 8.3706 4.5956 5.6314 23 14 7.8135 5.7771 8.0747 24 1 9.2255 6.2352 8.0342 25 1 6.9127 6.9560 8.1371 26 1 7.6021 4.9285 9.2749 27 6 5.5531 4.3187 3.8785 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.5452 0.2771 1.0281 34 1 3.8693 -0.3008 -0.5137 35 1 5.2222 0.8558 -0.5129 36 1 3.8667 3.1332 -2.1371 37 1 4.6954 5.4455 -2.1354 38 1 5.1177 6.6132 -0.0122 39 1 4.7151 5.4773 2.1278 40 1 4.2981 1.8974 5.1953 41 1 3.7183 3.5692 5.6135 42 1 7.7528 2.7350 4.8813 43 1 9.2559 4.9702 5.7619 44 1 5.1917 5.3172 4.1244 45 1 6.3437 4.3239 3.1281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331906532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:46 Heat of formation + Delta-G solvation = -63.552174 kcal Electronic energy + Delta-G solvation = -29496.627650 eV Core-core repulsion = 25480.155476 eV Total energy + Delta-G solvation = -4016.472174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97267 -40.94767 -39.57817 -38.66123 -36.61327 -35.81357 -34.16907 -33.82519 -32.63495 -31.18462 -30.10317 -27.75538 -27.25531 -27.13638 -25.87031 -24.49713 -23.11264 -21.85778 -20.66809 -20.00960 -19.33115 -18.44105 -18.19868 -17.77809 -17.41967 -17.18345 -16.89430 -16.36040 -16.05082 -15.89741 -15.68415 -15.26690 -14.95858 -14.74086 -14.49617 -14.30085 -14.09017 -13.89242 -13.81196 -13.55249 -13.45589 -13.42576 -13.09633 -12.97588 -12.87095 -12.76040 -12.60518 -12.41916 -12.26408 -12.23290 -12.07764 -11.43326 -11.04973 -10.91927 -10.66309 -10.30170 -10.07406 -9.90019 -9.86302 -9.56098 -8.27717 -6.45030 -0.20844 0.21773 1.47530 1.49675 1.56732 1.60662 1.79073 1.86608 2.02595 2.39972 2.70553 2.94564 3.37354 3.65177 3.69585 3.84055 4.04725 4.07226 4.11869 4.14920 4.20659 4.31220 4.34417 4.40932 4.46240 4.52919 4.53717 4.65329 4.69198 4.74378 4.80146 4.83263 4.91664 4.97264 5.02058 5.18409 5.21736 5.27698 5.34388 5.37560 5.54090 5.70677 5.90542 5.93922 6.29626 6.59980 6.74534 7.08190 7.19284 7.28360 7.41714 8.78174 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.003518 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.916741 B = 7956.742003 C = 8818.527209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.133 4.133 3 C 0.523 3.477 4 O -0.583 6.583 5 N -0.574 5.574 6 C 0.081 3.919 7 C 0.167 3.833 8 C -0.124 4.124 9 C -0.078 4.078 10 C -0.119 4.119 11 C -0.094 4.094 12 C -0.152 4.152 13 C 0.563 3.437 14 O -0.578 6.578 15 N -0.631 5.631 16 C 0.113 3.887 17 C 0.225 3.775 18 O -0.585 6.585 19 C -0.560 4.560 20 H 0.071 0.929 21 C 0.037 3.963 22 N -0.913 5.913 23 Si 0.967 3.033 24 H -0.281 1.281 25 H -0.268 1.268 26 H -0.276 1.276 27 C 0.096 3.904 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.035 0.965 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.129 0.871 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.388 0.612 43 H 0.276 0.724 44 H 0.092 0.908 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -2.602 -15.501 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.173 4.173 3 C 0.315 3.685 4 O -0.462 6.462 5 N -0.304 5.304 6 C -0.060 4.060 7 C 0.075 3.925 8 C -0.143 4.143 9 C -0.096 4.096 10 C -0.137 4.137 11 C -0.113 4.113 12 C -0.156 4.156 13 C 0.355 3.645 14 O -0.460 6.460 15 N -0.364 5.364 16 C -0.009 4.009 17 C 0.184 3.816 18 O -0.396 6.396 19 C -0.598 4.598 20 H 0.089 0.911 21 C -0.164 4.164 22 N -0.553 5.553 23 Si 0.792 3.208 24 H -0.206 1.206 25 H -0.193 1.193 26 H -0.201 1.201 27 C -0.026 4.026 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.149 0.851 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.169 0.831 37 H 0.191 0.809 38 H 0.181 0.819 39 H 0.147 0.853 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.242 0.758 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.186 -3.037 -15.723 16.833 hybrid contribution 0.833 0.818 1.436 1.851 sum -4.353 -2.219 -14.287 15.099 Atomic orbital electron populations 1.21512 0.93069 1.02789 1.01569 1.21698 0.98466 0.91221 1.05896 1.21443 0.80756 0.93131 0.73185 1.90621 1.55814 1.48525 1.51266 1.45177 1.06765 1.04649 1.73797 1.22019 0.93180 0.88952 1.01845 1.17769 0.96819 0.85833 0.92046 1.21559 1.00075 0.96099 0.96583 1.21680 0.94948 0.93187 0.99781 1.21553 0.99365 1.01660 0.91080 1.21646 0.96231 0.92795 1.00653 1.20340 1.06094 0.96701 0.92498 1.18313 0.79466 0.83024 0.83681 1.90641 1.37544 1.31559 1.86295 1.50161 1.37821 1.41393 1.06977 1.23447 0.97876 1.00227 0.79372 1.20052 0.85094 0.84825 0.91657 1.86047 1.21111 1.38289 1.94198 1.21670 0.98378 1.33578 1.06174 0.91129 1.25711 0.95479 0.95989 0.99255 1.69459 1.04436 1.45855 1.35528 0.85462 0.77302 0.78805 0.79193 1.20613 1.19320 1.20126 1.24167 0.86464 0.93779 0.98187 0.95003 0.92564 0.88986 0.85137 0.88553 0.94623 0.86715 0.89579 0.83120 0.80885 0.81868 0.85312 0.92281 0.88219 0.75818 0.91371 0.89026 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.20 71.98 0.66 -2.36 16 2 C -0.13 -3.10 4.97 29.85 0.15 -2.95 16 3 C 0.52 17.56 6.20 87.65 0.54 18.11 16 4 O -0.58 -24.68 15.95 -3.04 -0.05 -24.73 16 5 N -0.57 -17.99 1.69 -653.87 -1.10 -19.09 16 6 C 0.08 1.90 10.23 127.77 1.31 3.21 16 7 C 0.17 5.55 4.42 38.60 0.17 5.72 16 8 C -0.12 -3.10 9.96 22.36 0.22 -2.87 16 9 C -0.08 -1.57 10.03 22.30 0.22 -1.35 16 10 C -0.12 -2.77 10.02 22.25 0.22 -2.55 16 11 C -0.09 -3.01 8.82 22.51 0.20 -2.81 16 12 C -0.15 -5.78 5.83 -19.99 -0.12 -5.89 16 13 C 0.56 25.31 7.74 86.69 0.67 25.98 16 14 O -0.58 -28.42 15.09 -4.00 -0.06 -28.48 16 15 N -0.63 -28.08 3.58 -843.48 -3.02 -31.09 16 16 C 0.11 5.11 8.23 86.49 0.71 5.83 16 17 C 0.22 10.83 1.40 -10.88 -0.02 10.82 16 18 O -0.58 -30.34 13.48 -148.98 -2.01 -32.34 16 19 C -0.56 -27.80 8.61 25.60 0.22 -27.58 16 20 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 21 C 0.04 1.79 5.39 84.66 0.46 2.24 16 22 N -0.91 -44.99 11.20 21.45 0.24 -44.75 16 23 Si 0.97 38.80 29.54 68.60 2.03 40.82 16 24 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 26 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 27 C 0.10 4.16 5.69 86.44 0.49 4.65 16 28 H 0.03 0.91 8.10 -2.39 -0.02 0.89 16 29 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.13 1.88 7.40 -2.39 -0.02 1.86 16 32 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.70 6.44 -2.39 -0.02 1.69 16 35 H 0.09 1.72 8.05 -2.38 -0.02 1.70 16 36 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.13 4.18 5.55 -2.91 -0.02 4.16 16 40 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.10 4.16 8.09 -2.39 -0.02 4.14 16 42 H 0.39 20.19 6.60 -74.06 -0.49 19.70 16 43 H 0.28 12.92 8.31 -92.70 -0.77 12.15 16 44 H 0.09 3.73 7.71 -2.39 -0.02 3.71 16 45 H 0.07 2.92 7.86 -2.39 -0.02 2.90 16 Total: -1.00 -72.13 375.33 2.67 -69.45 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.53 Total: 42.03 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 6.12 Total: 28.18 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.88 Total: -94.94 kcal Atomic # 8 Polarization: -83.43 SS G_CDS: -2.12 Total: -85.55 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Total: -72.13 2.67 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331906532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.902 kcal (2) G-P(sol) polarization free energy of solvation -72.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds