Wall clock time and date at job start Tue Mar 31 2020 17:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00207 * 2 1 4 4 O 1.20828 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00164 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.64697 * 56.85281 * 5 3 2 7 7 C 1.55155 * 110.71833 * 293.51807 * 5 3 2 8 8 C 1.55131 * 101.48705 * 205.96760 * 7 5 3 9 9 N 1.47426 * 104.72284 * 37.29753 * 8 7 5 10 10 C 1.34772 * 125.64872 * 155.81508 * 9 8 7 11 11 O 1.21582 * 119.99708 * 179.69194 * 10 9 8 12 12 N 1.34772 * 120.00276 * 359.69137 * 10 9 8 13 13 C 1.39241 * 120.00322 * 184.98922 * 12 10 9 14 14 C 1.39480 * 119.83815 * 211.51016 * 13 12 10 15 15 C 1.36375 * 120.16941 * 180.02562 * 14 13 12 16 16 C 1.40861 * 119.82741 * 359.97438 * 15 14 13 17 17 C 1.41157 * 120.16184 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99924 * 330.41463 * 17 16 15 19 19 C 1.39897 * 120.00277 * 150.41357 * 17 16 15 20 20 N 1.30887 * 119.99701 * 333.85304 * 19 17 16 21 21 Si 1.86800 * 120.00221 * 153.85340 * 19 17 16 22 22 H 1.48498 * 109.47119 * 90.00105 * 21 19 17 23 23 H 1.48497 * 109.46908 * 330.00129 * 21 19 17 24 24 H 1.48498 * 109.47268 * 209.99797 * 21 19 17 25 25 C 1.40867 * 119.67703 * 0.26997 * 16 15 14 26 26 C 1.36377 * 119.82464 * 359.47220 * 25 16 15 27 27 C 1.47028 * 108.69979 * 335.55220 * 9 8 7 28 28 H 1.09000 * 109.87946 * 120.70554 * 27 9 8 29 29 C 1.52997 * 109.88003 * 241.71493 * 27 9 8 30 30 H 1.09004 * 109.46766 * 300.00823 * 1 2 3 31 31 H 1.09001 * 109.46836 * 59.99939 * 1 2 3 32 32 H 1.08992 * 109.47294 * 180.02562 * 1 2 3 33 33 H 1.08999 * 111.00809 * 324.20866 * 7 5 3 34 34 H 1.09004 * 111.00249 * 88.02421 * 7 5 3 35 35 H 1.08998 * 110.49882 * 278.45360 * 8 7 5 36 36 H 1.09004 * 110.34367 * 156.06089 * 8 7 5 37 37 H 0.97003 * 120.00195 * 4.99623 * 12 10 9 38 38 H 1.08002 * 119.91160 * 0.02562 * 14 13 12 39 39 H 1.07998 * 120.08134 * 179.97438 * 15 14 13 40 40 H 0.96996 * 120.00059 * 354.20215 * 20 19 17 41 41 H 1.07999 * 120.08885 * 179.70226 * 25 16 15 42 42 H 1.07995 * 119.91494 * 180.27497 * 26 25 16 43 43 H 1.08998 * 109.47271 * 58.54883 * 29 27 9 44 44 H 1.09005 * 109.47216 * 178.54560 * 29 27 9 45 45 H 1.09000 * 109.47463 * 298.54763 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9790 0.7381 -0.8549 7 6 4.1453 0.7250 1.3297 8 6 5.4951 1.4846 1.4166 9 7 5.2021 2.8305 0.8910 10 6 5.8922 3.9524 1.1760 11 8 5.5627 5.0117 0.6785 12 7 6.9477 3.9003 2.0125 13 6 7.5965 5.0734 2.3889 14 6 8.9646 5.0535 2.6598 15 6 9.6068 6.1984 3.0294 16 6 8.8849 7.4032 3.1368 17 6 9.5426 8.5924 3.5183 18 1 10.4073 8.5481 4.1638 19 6 9.0743 9.8286 3.0604 20 7 8.4079 9.9003 1.9361 21 14 9.4000 11.3769 4.0534 22 1 10.6843 11.9826 3.6189 23 1 9.4780 11.0326 5.4958 24 1 8.2966 12.3464 3.8349 25 6 7.5024 7.4143 2.8666 26 6 6.8750 6.2626 2.4929 27 6 4.0361 2.7448 -0.0006 28 1 3.2384 3.3889 0.3695 29 6 4.4317 3.1681 -1.4166 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.4979 0.9745 2.1704 34 1 4.3072 -0.3513 1.2701 35 1 6.2497 0.9935 0.8023 36 1 5.8293 1.5463 2.4523 37 1 7.2554 3.0454 2.3523 38 1 9.5167 4.1290 2.5766 39 1 10.6660 6.1813 3.2393 40 1 8.3111 9.1124 1.3787 41 1 6.9415 8.3333 2.9516 42 1 5.8161 6.2704 2.2811 43 1 5.2346 2.5251 -1.7771 44 1 3.5694 3.0775 -2.0772 45 1 4.7729 4.2032 -1.4045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347815534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:30 Heat of formation + Delta-G solvation = -88.954592 kcal Electronic energy + Delta-G solvation = -28158.894546 eV Core-core repulsion = 24141.320841 eV Total energy + Delta-G solvation = -4017.573705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23940 -40.12636 -38.39397 -37.15104 -36.63239 -34.61497 -33.16508 -31.98465 -31.44855 -29.60974 -28.76001 -28.19687 -26.45623 -24.85748 -23.13699 -22.85599 -21.52480 -21.08149 -20.31085 -19.19182 -18.45269 -17.84365 -17.63335 -17.12007 -16.65375 -16.44601 -15.68217 -14.85388 -14.65839 -14.44641 -14.24903 -14.03724 -13.88714 -13.65242 -13.30851 -13.23916 -13.00161 -12.69723 -12.53285 -12.37795 -12.30893 -12.13796 -11.96545 -11.75867 -11.35959 -11.31409 -11.20635 -11.10672 -11.00716 -10.97721 -10.70631 -10.35791 -10.01444 -9.83882 -9.38541 -9.11814 -8.71003 -8.61024 -7.69992 -7.18854 -6.96225 -4.30020 1.80473 2.15658 2.64717 2.87367 2.95046 3.19709 3.27084 3.41164 3.66053 3.88403 4.02439 4.08913 4.30004 4.43094 4.65517 4.69477 4.72395 4.79247 4.81950 4.87950 5.13557 5.20461 5.28053 5.33362 5.43989 5.54872 5.57051 5.65861 5.93251 5.98229 6.05360 6.18213 6.29143 6.36780 6.69311 6.82944 6.95645 7.16745 7.18375 7.35124 7.47223 7.69427 7.82671 7.86594 7.90935 8.26975 8.35202 8.40067 8.79128 8.94716 9.06848 10.14761 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.002308 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.260491 B =12129.055245 C =12689.262744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.495 6.495 5 C -0.094 4.094 6 H 0.125 0.875 7 C -0.116 4.116 8 C 0.098 3.902 9 N -0.639 5.639 10 C 0.715 3.285 11 O -0.567 6.567 12 N -0.663 5.663 13 C 0.006 3.994 14 C -0.098 4.098 15 C -0.214 4.214 16 C 0.092 3.908 17 C -0.526 4.526 18 H 0.075 0.925 19 C 0.038 3.962 20 N -0.796 5.796 21 Si 1.066 2.934 22 H -0.278 1.278 23 H -0.276 1.276 24 H -0.274 1.274 25 C -0.203 4.203 26 C -0.070 4.070 27 C 0.166 3.834 28 H 0.094 0.906 29 C -0.163 4.163 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.390 0.610 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.299 0.701 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -21.969 -3.055 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.382 6.382 5 C -0.114 4.114 6 H 0.143 0.857 7 C -0.154 4.154 8 C -0.025 4.025 9 N -0.380 5.380 10 C 0.417 3.583 11 O -0.443 6.443 12 N -0.309 5.309 13 C -0.087 4.087 14 C -0.118 4.118 15 C -0.234 4.234 16 C 0.089 3.911 17 C -0.555 4.555 18 H 0.093 0.907 19 C -0.184 4.184 20 N -0.419 5.419 21 Si 0.890 3.110 22 H -0.204 1.204 23 H -0.201 1.201 24 H -0.199 1.199 25 C -0.223 4.223 26 C -0.091 4.091 27 C 0.062 3.938 28 H 0.112 0.888 29 C -0.221 4.221 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.224 0.776 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.210 -19.153 -3.399 22.451 hybrid contribution 0.251 -2.266 -0.024 2.280 sum -10.959 -21.419 -3.424 24.302 Atomic orbital electron populations 1.23307 0.76029 1.03800 1.02798 1.86490 1.23616 1.33131 1.84134 1.23309 0.91436 0.81498 0.72428 1.90720 1.66839 1.36223 1.44384 1.22130 0.87917 0.99093 1.02271 0.85704 1.22795 0.96364 1.00981 0.95292 1.22324 0.96836 0.83349 1.00017 1.47620 1.32891 1.06738 1.50724 1.15434 0.80506 0.82443 0.79867 1.90936 1.69948 1.27469 1.55909 1.42074 1.31615 1.09038 1.48172 1.16898 0.91197 0.85584 1.15007 1.20054 0.91597 0.97391 1.02807 1.20530 0.97893 0.93341 1.11626 1.17710 0.91391 0.92899 0.89122 1.20451 1.14160 0.91978 1.28867 0.90706 1.26985 0.92059 1.03350 0.96028 1.70429 1.27682 1.35913 1.07828 0.83649 0.77485 0.74036 0.75866 1.20390 1.20105 1.19883 1.20803 0.94514 0.97068 1.09882 1.20442 0.98756 0.91938 0.97915 1.21160 0.88343 0.92967 0.91324 0.88780 1.22170 1.01272 1.04125 0.94524 0.91749 0.91741 0.87937 0.89886 0.88354 0.90951 0.90214 0.77643 0.89121 0.88535 0.88730 0.87789 0.87409 0.92513 0.91953 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.98 10.57 -39.25 -0.41 -3.40 16 3 C 0.47 4.79 7.26 36.00 0.26 5.06 16 4 O -0.50 -6.72 15.17 -18.75 -0.28 -7.00 16 5 C -0.09 -0.82 2.98 -89.94 -0.27 -1.09 16 6 H 0.13 0.80 7.85 -51.93 -0.41 0.39 16 7 C -0.12 -0.80 6.53 -24.46 -0.16 -0.96 16 8 C 0.10 0.85 6.55 -2.41 -0.02 0.83 16 9 N -0.64 -8.73 3.06 -168.55 -0.52 -9.24 16 10 C 0.71 13.32 8.02 -86.93 -0.70 12.62 16 11 O -0.57 -13.14 12.88 5.29 0.07 -13.07 16 12 N -0.66 -11.95 5.27 -14.10 -0.07 -12.03 16 13 C 0.01 0.13 6.33 -83.57 -0.53 -0.40 16 14 C -0.10 -2.15 9.89 -39.79 -0.39 -2.55 16 15 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 16 C 0.09 2.49 5.19 -106.80 -0.55 1.93 16 17 C -0.53 -14.27 8.94 -37.85 -0.34 -14.61 16 18 H 0.07 1.96 7.97 -52.49 -0.42 1.54 16 19 C 0.04 0.99 4.88 -17.33 -0.08 0.91 16 20 N -0.80 -22.16 12.49 55.55 0.69 -21.47 16 21 Si 1.07 22.26 30.00 -169.99 -5.10 17.16 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.20 -5.47 8.00 -39.26 -0.31 -5.78 16 26 C -0.07 -1.78 8.58 -39.79 -0.34 -2.12 16 27 C 0.17 2.11 2.88 -66.95 -0.19 1.92 16 28 H 0.09 1.46 6.81 -51.93 -0.35 1.11 16 29 C -0.16 -2.07 9.11 37.16 0.34 -1.73 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.63 7.37 -51.93 -0.38 0.24 16 37 H 0.39 5.47 7.34 -40.82 -0.30 5.17 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.30 8.69 6.96 -40.82 -0.28 8.41 16 41 H 0.10 2.92 6.86 -52.49 -0.36 2.56 16 42 H 0.11 2.78 6.24 -52.49 -0.33 2.45 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.33 6.87 -51.93 -0.36 0.97 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -33.93 371.58 -8.84 -42.77 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.21 Total: 10.99 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.60 Total: -10.31 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.10 Total: -42.74 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.63 Total: -23.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.10 Total: 17.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.93 -8.84 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347815534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.182 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds