Wall clock time and date at job start Tue Mar 31 2020 17:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00207 * 2 1 4 4 O 1.20828 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00164 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.64697 * 56.85281 * 5 3 2 7 7 C 1.55155 * 110.71833 * 293.51807 * 5 3 2 8 8 C 1.55131 * 101.48705 * 205.96760 * 7 5 3 9 9 N 1.47426 * 104.72284 * 37.29753 * 8 7 5 10 10 C 1.34772 * 125.64872 * 155.81508 * 9 8 7 11 11 O 1.21582 * 119.99708 * 179.69194 * 10 9 8 12 12 N 1.34772 * 120.00276 * 359.69137 * 10 9 8 13 13 C 1.39241 * 120.00322 * 184.98922 * 12 10 9 14 14 C 1.39480 * 119.83815 * 211.51016 * 13 12 10 15 15 C 1.36375 * 120.16941 * 180.02562 * 14 13 12 16 16 C 1.40861 * 119.82741 * 359.97438 * 15 14 13 17 17 C 1.41157 * 120.16184 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99924 * 330.41463 * 17 16 15 19 19 C 1.39897 * 120.00277 * 150.41357 * 17 16 15 20 20 N 1.30887 * 119.99701 * 333.85304 * 19 17 16 21 21 Si 1.86800 * 120.00221 * 153.85340 * 19 17 16 22 22 H 1.48498 * 109.47119 * 90.00105 * 21 19 17 23 23 H 1.48497 * 109.46908 * 330.00129 * 21 19 17 24 24 H 1.48498 * 109.47268 * 209.99797 * 21 19 17 25 25 C 1.40867 * 119.67703 * 0.26997 * 16 15 14 26 26 C 1.36377 * 119.82464 * 359.47220 * 25 16 15 27 27 C 1.47028 * 108.69979 * 335.55220 * 9 8 7 28 28 H 1.09000 * 109.87946 * 120.70554 * 27 9 8 29 29 C 1.52997 * 109.88003 * 241.71493 * 27 9 8 30 30 H 1.09004 * 109.46766 * 300.00823 * 1 2 3 31 31 H 1.09001 * 109.46836 * 59.99939 * 1 2 3 32 32 H 1.08992 * 109.47294 * 180.02562 * 1 2 3 33 33 H 1.08999 * 111.00809 * 324.20866 * 7 5 3 34 34 H 1.09004 * 111.00249 * 88.02421 * 7 5 3 35 35 H 1.08998 * 110.49882 * 278.45360 * 8 7 5 36 36 H 1.09004 * 110.34367 * 156.06089 * 8 7 5 37 37 H 0.97003 * 120.00195 * 4.99623 * 12 10 9 38 38 H 1.08002 * 119.91160 * 0.02562 * 14 13 12 39 39 H 1.07998 * 120.08134 * 179.97438 * 15 14 13 40 40 H 0.96996 * 120.00059 * 354.20215 * 20 19 17 41 41 H 1.07999 * 120.08885 * 179.70226 * 25 16 15 42 42 H 1.07995 * 119.91494 * 180.27497 * 26 25 16 43 43 H 1.08998 * 109.47271 * 58.54883 * 29 27 9 44 44 H 1.09005 * 109.47216 * 178.54560 * 29 27 9 45 45 H 1.09000 * 109.47463 * 298.54763 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9790 0.7381 -0.8549 7 6 4.1453 0.7250 1.3297 8 6 5.4951 1.4846 1.4166 9 7 5.2021 2.8305 0.8910 10 6 5.8922 3.9524 1.1760 11 8 5.5627 5.0117 0.6785 12 7 6.9477 3.9003 2.0125 13 6 7.5965 5.0734 2.3889 14 6 8.9646 5.0535 2.6598 15 6 9.6068 6.1984 3.0294 16 6 8.8849 7.4032 3.1368 17 6 9.5426 8.5924 3.5183 18 1 10.4073 8.5481 4.1638 19 6 9.0743 9.8286 3.0604 20 7 8.4079 9.9003 1.9361 21 14 9.4000 11.3769 4.0534 22 1 10.6843 11.9826 3.6189 23 1 9.4780 11.0326 5.4958 24 1 8.2966 12.3464 3.8349 25 6 7.5024 7.4143 2.8666 26 6 6.8750 6.2626 2.4929 27 6 4.0361 2.7448 -0.0006 28 1 3.2384 3.3889 0.3695 29 6 4.4317 3.1681 -1.4166 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.4979 0.9745 2.1704 34 1 4.3072 -0.3513 1.2701 35 1 6.2497 0.9935 0.8023 36 1 5.8293 1.5463 2.4523 37 1 7.2554 3.0454 2.3523 38 1 9.5167 4.1290 2.5766 39 1 10.6660 6.1813 3.2393 40 1 8.3111 9.1124 1.3787 41 1 6.9415 8.3333 2.9516 42 1 5.8161 6.2704 2.2811 43 1 5.2346 2.5251 -1.7771 44 1 3.5694 3.0775 -2.0772 45 1 4.7729 4.2032 -1.4045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347815534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:29 Heat of formation + Delta-G solvation = -110.222952 kcal Electronic energy + Delta-G solvation = -28159.816811 eV Core-core repulsion = 24141.320841 eV Total energy + Delta-G solvation = -4018.495970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.16335 -41.37511 -39.82680 -38.60837 -37.51143 -36.39663 -34.89504 -33.13675 -32.38616 -31.56900 -30.43619 -29.03194 -27.27033 -26.66588 -24.44690 -23.61379 -23.30928 -22.67831 -21.40865 -20.50701 -19.82391 -19.54529 -18.58904 -18.10135 -17.91139 -17.33882 -16.86203 -16.41423 -16.14698 -16.02719 -15.65624 -15.09913 -15.05641 -14.68651 -14.52289 -14.36583 -14.30757 -14.25003 -13.87074 -13.82446 -13.50308 -13.18356 -13.13090 -12.94149 -12.82482 -12.70133 -12.65457 -12.11636 -11.97760 -11.94728 -11.87954 -11.83482 -11.61004 -11.53013 -11.18393 -10.95942 -10.60880 -9.78824 -9.67546 -9.21164 -8.85781 -6.35646 0.77109 0.95253 1.03399 1.28955 1.49559 1.60657 1.79748 1.81592 2.12304 2.35065 2.72358 2.96560 3.20039 3.35440 3.54664 3.69083 4.01377 4.10181 4.16594 4.27202 4.28129 4.30503 4.31450 4.34463 4.47943 4.61351 4.63433 4.71220 4.74628 4.89634 4.94106 4.96672 5.02875 5.06554 5.16334 5.23319 5.28661 5.36434 5.44039 5.60835 5.76400 5.83536 5.95712 6.09127 6.26538 6.38267 6.60797 6.78373 6.97461 6.97888 7.58221 8.06079 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.002308 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.260491 B =12129.055245 C =12689.262744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.082 4.082 6 H 0.161 0.839 7 C -0.104 4.104 8 C 0.088 3.912 9 N -0.632 5.632 10 C 0.709 3.291 11 O -0.622 6.622 12 N -0.652 5.652 13 C 0.029 3.971 14 C -0.090 4.090 15 C -0.217 4.217 16 C 0.062 3.938 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.002 4.002 20 N -0.825 5.825 21 Si 1.119 2.881 22 H -0.257 1.257 23 H -0.261 1.261 24 H -0.275 1.275 25 C -0.221 4.221 26 C -0.088 4.088 27 C 0.159 3.841 28 H 0.055 0.945 29 C -0.156 4.156 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.137 0.863 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.415 0.585 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.278 0.722 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 -26.394 -2.646 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.318 3.682 4 O -0.429 6.429 5 C -0.102 4.102 6 H 0.178 0.822 7 C -0.142 4.142 8 C -0.033 4.033 9 N -0.371 5.371 10 C 0.411 3.589 11 O -0.502 6.502 12 N -0.300 5.300 13 C -0.065 4.065 14 C -0.110 4.110 15 C -0.237 4.237 16 C 0.059 3.941 17 C -0.588 4.588 18 H 0.096 0.904 19 C -0.217 4.217 20 N -0.448 5.448 21 Si 0.936 3.064 22 H -0.181 1.181 23 H -0.185 1.185 24 H -0.200 1.200 25 C -0.241 4.241 26 C -0.108 4.108 27 C 0.055 3.945 28 H 0.073 0.927 29 C -0.214 4.214 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.160 0.840 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.253 0.747 38 H 0.159 0.841 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.226 -23.715 -2.982 25.998 hybrid contribution -0.214 -1.189 -0.216 1.227 sum -10.440 -24.904 -3.197 27.193 Atomic orbital electron populations 1.23584 0.74750 1.05940 1.02358 1.86481 1.24825 1.31763 1.83475 1.23601 0.92015 0.81371 0.71203 1.90723 1.67871 1.37778 1.46558 1.22103 0.87021 0.96083 1.04960 0.82166 1.22865 0.94682 1.03095 0.93558 1.22805 0.98805 0.80479 1.01235 1.47559 1.31926 1.07450 1.50126 1.15646 0.80585 0.83036 0.79595 1.90917 1.71258 1.30290 1.57765 1.41800 1.31381 1.08692 1.48168 1.16971 0.91607 0.86010 1.11902 1.20430 0.91218 0.98584 1.00797 1.20829 0.98772 0.93199 1.10861 1.18022 0.91466 0.94432 0.90176 1.20659 1.15141 0.92806 1.30206 0.90353 1.28505 0.90682 1.06662 0.95805 1.70567 1.30542 1.34657 1.09082 0.83014 0.78097 0.70239 0.75076 1.18110 1.18504 1.20047 1.20666 0.94967 0.96712 1.11723 1.20447 0.98373 0.93066 0.98937 1.21181 0.86998 0.95584 0.90722 0.92725 1.22085 1.02431 1.01785 0.95142 0.92383 0.92138 0.84464 0.90796 0.83990 0.87725 0.88937 0.74706 0.84091 0.86890 0.91091 0.90546 0.88926 0.90226 0.90696 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -4.86 10.57 -51.39 -0.54 -5.40 16 3 C 0.47 8.83 7.26 71.23 0.52 9.35 16 4 O -0.54 -14.83 15.17 21.96 0.33 -14.49 16 5 C -0.08 -1.17 2.98 -10.35 -0.03 -1.20 16 6 H 0.16 1.22 7.85 -2.39 -0.02 1.20 16 7 C -0.10 -0.96 6.53 32.06 0.21 -0.75 16 8 C 0.09 1.13 6.55 86.93 0.57 1.70 16 9 N -0.63 -16.25 3.06 -805.44 -2.47 -18.72 16 10 C 0.71 26.26 8.02 179.06 1.44 27.69 16 11 O -0.62 -30.31 12.88 -3.97 -0.05 -30.37 16 12 N -0.65 -22.26 5.27 -316.79 -1.67 -23.93 16 13 C 0.03 1.29 6.33 38.56 0.24 1.53 16 14 C -0.09 -3.74 9.89 22.13 0.22 -3.52 16 15 C -0.22 -10.45 9.74 22.48 0.22 -10.23 16 16 C 0.06 3.46 5.19 -21.28 -0.11 3.35 16 17 C -0.56 -31.36 8.94 23.39 0.21 -31.16 16 18 H 0.08 4.18 7.97 -2.91 -0.02 4.16 16 19 C 0.00 -0.09 4.88 85.24 0.42 0.32 16 20 N -0.83 -48.67 12.49 21.82 0.27 -48.40 16 21 Si 1.12 45.75 30.00 68.60 2.06 47.81 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.22 -12.63 8.00 22.48 0.18 -12.45 16 26 C -0.09 -4.63 8.58 22.14 0.19 -4.44 16 27 C 0.16 3.95 2.88 45.34 0.13 4.08 16 28 H 0.05 1.80 6.81 -2.39 -0.02 1.79 16 29 C -0.16 -3.94 9.11 71.98 0.66 -3.29 16 30 H 0.06 0.67 8.13 -2.39 -0.02 0.66 16 31 H 0.06 0.67 8.13 -2.39 -0.02 0.66 16 32 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.87 8.04 -2.39 -0.02 0.85 16 34 H 0.14 0.22 8.14 -2.38 -0.02 0.20 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.01 7.37 -2.38 -0.02 0.99 16 37 H 0.42 9.99 7.34 -92.71 -0.68 9.31 16 38 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 40 H 0.28 17.35 6.96 -92.71 -0.65 16.70 16 41 H 0.08 4.68 6.86 -2.91 -0.02 4.66 16 42 H 0.09 5.12 6.24 -2.91 -0.02 5.10 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.04 1.27 6.87 -2.39 -0.02 1.25 16 Total: -1.00 -82.91 371.58 4.65 -78.26 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.46 Total: 32.77 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 6.25 Total: -17.54 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -3.86 Total: -91.04 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.26 Total: -50.26 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.06 Total: 47.81 kcal Total: -82.91 4.65 -78.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347815534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.961 kcal (2) G-P(sol) polarization free energy of solvation -82.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds