Wall clock time and date at job start Tue Mar 31 2020 18:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 O 1.42900 * 109.46843 * 180.02562 * 16 14 12 18 18 C 1.35972 * 117.00107 * 180.02562 * 17 16 14 19 19 C 1.38744 * 119.98383 * 359.97438 * 18 17 16 20 20 C 1.38074 * 120.03343 * 180.02562 * 19 18 17 21 21 C 1.38851 * 119.96910 * 359.97438 * 20 19 18 22 22 C 1.38848 * 119.95692 * 359.97438 * 21 20 19 23 23 C 1.38069 * 120.02065 * 359.74707 * 22 21 20 24 24 C 1.50680 * 119.83737 * 179.97438 * 22 21 20 25 25 C 1.52895 * 109.54386 * 326.07500 * 24 22 21 26 26 C 1.50500 * 109.91162 * 48.64040 * 25 24 22 27 27 O 1.21293 * 119.62257 * 144.76465 * 26 25 24 28 28 N 1.34569 * 120.75383 * 324.74388 * 26 25 24 29 29 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 30 30 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 31 31 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 32 32 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 33 33 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 34 34 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 35 35 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 36 36 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 37 37 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 38 38 H 1.08003 * 119.98769 * 359.97438 * 19 18 17 39 39 H 1.07998 * 120.01678 * 179.97438 * 20 19 18 40 40 H 1.08008 * 120.00546 * 180.25170 * 23 22 21 41 41 H 1.09000 * 109.45728 * 206.05081 * 24 22 21 42 42 H 1.09000 * 109.44396 * 86.08871 * 24 22 21 43 43 H 1.09003 * 109.39754 * 288.50538 * 25 24 22 44 44 H 1.08998 * 109.40079 * 168.77899 * 25 24 22 45 45 H 0.96994 * 119.77685 * 180.82419 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 8 4.0886 0.1525 4.0921 18 6 4.6219 -0.3345 5.2442 19 6 4.3846 -1.6498 5.6164 20 6 4.9252 -2.1452 6.7864 21 6 5.7072 -1.3265 7.5903 22 6 5.9450 -0.0106 7.2164 23 6 5.4086 0.4820 6.0433 24 6 6.7934 0.8757 8.0911 25 6 6.5747 0.5064 9.5586 26 6 6.6894 -0.9839 9.7346 27 8 7.1769 -1.4317 10.7510 28 7 6.2570 -1.8252 8.7775 29 1 -0.3633 -1.0222 0.1053 30 1 -0.3633 0.6023 0.8326 31 1 -0.3634 0.4199 -0.9379 32 1 2.2553 -1.8357 -3.4698 33 1 2.4157 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6904 -2.3002 0.9847 36 1 2.4470 -1.0880 3.9073 37 1 3.9004 -1.6025 3.0178 38 1 3.7760 -2.2864 4.9912 39 1 4.7400 -3.1689 7.0761 40 1 5.5971 1.5044 5.7507 41 1 6.5133 1.9171 7.9331 42 1 7.8441 0.7394 7.8351 43 1 5.5822 0.8323 9.8698 44 1 7.3263 1.0024 10.1727 45 1 6.3269 -2.7834 8.9110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349369070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:50 Heat of formation + Delta-G solvation = -103.588429 kcal Electronic energy + Delta-G solvation = -27671.784172 eV Core-core repulsion = 23653.575896 eV Total energy + Delta-G solvation = -4018.208276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06445 -41.22544 -40.26847 -38.76971 -37.24706 -35.65165 -34.94433 -34.90207 -32.51633 -31.28107 -30.10622 -28.68903 -27.75042 -26.75578 -25.63675 -23.94427 -23.67124 -22.80316 -20.53684 -19.96594 -19.55795 -19.14737 -18.77279 -18.08961 -17.59863 -17.47873 -17.31061 -16.85120 -16.04906 -15.96147 -15.84283 -15.49208 -15.12543 -14.87609 -14.68069 -14.58266 -14.46092 -14.18486 -14.12038 -13.82510 -13.72972 -13.42090 -13.29629 -13.20456 -12.98673 -12.85575 -12.53438 -12.39363 -12.34198 -11.85730 -11.82933 -11.64987 -11.18222 -11.17886 -11.04475 -10.75066 -10.48695 -9.88667 -9.57907 -8.72700 -8.68491 -6.40670 0.15795 0.26492 1.41846 1.47091 1.51793 1.55070 1.63330 1.70970 2.05141 2.41188 2.63960 2.70250 3.02945 3.37722 3.46950 3.67163 3.75667 3.84142 3.96676 4.07490 4.15230 4.17242 4.30603 4.35039 4.39355 4.49108 4.61571 4.72695 4.74208 4.77572 4.86283 4.91149 4.92080 4.94934 5.08390 5.12526 5.16396 5.30934 5.39022 5.55513 5.63527 5.74736 5.79263 6.01951 6.09606 6.35454 6.55232 6.62403 6.95146 7.19107 7.36301 8.61540 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.002107 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.376119 B =13284.371849 C =13723.290366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.232 3.768 3 H 0.029 0.971 4 C -0.604 4.604 5 H 0.034 0.966 6 C -0.011 4.011 7 N -0.930 5.930 8 Si 1.071 2.929 9 H -0.283 1.283 10 H -0.237 1.237 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.077 3.923 14 C 0.496 3.504 15 O -0.587 6.587 16 C 0.055 3.945 17 O -0.319 6.319 18 C 0.096 3.904 19 C -0.181 4.181 20 C -0.100 4.100 21 C 0.107 3.893 22 C -0.082 4.082 23 C -0.127 4.127 24 C -0.076 4.076 25 C -0.133 4.133 26 C 0.517 3.483 27 O -0.577 6.577 28 N -0.653 5.653 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.256 0.744 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -2.701 25.785 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.129 3.871 3 H 0.047 0.953 4 C -0.642 4.642 5 H 0.052 0.948 6 C -0.211 4.211 7 N -0.566 5.566 8 Si 0.894 3.106 9 H -0.209 1.209 10 H -0.161 1.161 11 H -0.210 1.210 12 N -0.324 5.324 13 C -0.065 4.065 14 C 0.284 3.716 15 O -0.467 6.467 16 C -0.023 4.023 17 O -0.232 6.232 18 C 0.050 3.950 19 C -0.200 4.200 20 C -0.121 4.121 21 C 0.012 3.988 22 C -0.084 4.084 23 C -0.146 4.146 24 C -0.113 4.113 25 C -0.172 4.172 26 C 0.307 3.693 27 O -0.456 6.456 28 N -0.298 5.298 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.174 0.826 39 H 0.177 0.823 40 H 0.157 0.843 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.858 -0.841 25.067 25.376 hybrid contribution 0.697 -2.168 0.315 2.299 sum 4.555 -3.009 25.382 25.962 Atomic orbital electron populations 1.22357 0.96009 1.01851 1.00923 1.18977 0.92288 0.93307 0.82529 0.95301 1.22315 1.39977 1.09348 0.92593 0.94758 1.26826 0.94640 1.07671 0.91935 1.70985 1.43631 1.09768 1.32217 0.83723 0.78825 0.71506 0.76582 1.20885 1.16093 1.20953 1.47945 1.49011 1.13604 1.21811 1.21934 1.01855 0.79788 1.02876 1.20814 0.78793 0.86886 0.85114 1.90660 1.59009 1.19344 1.77718 1.22592 0.97212 0.92109 0.90375 1.86152 1.64424 1.39947 1.32693 1.19274 0.95699 0.93633 0.86384 1.21347 1.04911 0.94252 0.99515 1.20825 0.96399 1.00914 0.93915 1.17648 0.99043 0.93782 0.88343 1.19456 0.99999 0.93492 0.95490 1.20233 0.99474 1.00918 0.94002 1.20520 0.99723 1.00348 0.90686 1.21733 1.07163 0.89462 0.98874 1.21292 0.75313 0.91281 0.81416 1.90765 1.45519 1.79809 1.29546 1.43511 1.59775 1.10862 1.15618 0.91705 0.93202 0.92476 0.93486 0.93217 0.87456 0.90573 0.85408 0.86800 0.82568 0.82348 0.84271 0.86805 0.89050 0.86488 0.85962 0.74576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 8.96 71.98 0.64 -5.43 16 2 C 0.23 10.77 2.22 44.24 0.10 10.87 16 3 H 0.03 1.51 5.56 -2.39 -0.01 1.50 16 4 C -0.60 -32.80 8.68 25.60 0.22 -32.58 16 5 H 0.03 2.00 7.75 -2.91 -0.02 1.97 16 6 C -0.01 -0.60 5.30 84.65 0.45 -0.16 16 7 N -0.93 -56.33 13.70 21.45 0.29 -56.03 16 8 Si 1.07 50.41 26.29 68.60 1.80 52.21 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.24 -9.72 5.74 99.48 0.57 -9.15 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 N -0.59 -22.40 2.75 -826.80 -2.28 -24.68 16 13 C 0.08 2.07 9.43 127.77 1.20 3.27 16 14 C 0.50 18.64 7.75 87.66 0.68 19.32 16 15 O -0.59 -28.30 15.83 16.02 0.25 -28.05 16 16 C 0.05 1.33 3.77 71.23 0.27 1.60 16 17 O -0.32 -9.03 9.67 -74.20 -0.72 -9.75 16 18 C 0.10 2.03 6.69 22.50 0.15 2.18 16 19 C -0.18 -2.74 9.03 22.35 0.20 -2.53 16 20 C -0.10 -1.25 9.92 22.38 0.22 -1.03 16 21 C 0.11 1.53 6.51 38.13 0.25 1.78 16 22 C -0.08 -1.23 5.66 -19.76 -0.11 -1.34 16 23 C -0.13 -2.40 9.63 22.34 0.22 -2.19 16 24 C -0.08 -0.76 5.99 29.81 0.18 -0.58 16 25 C -0.13 -1.38 6.07 29.75 0.18 -1.20 16 26 C 0.52 8.76 7.72 87.63 0.68 9.43 16 27 O -0.58 -14.35 17.91 -3.07 -0.06 -14.40 16 28 N -0.65 -9.04 5.37 -303.92 -1.63 -10.67 16 29 H 0.06 2.33 6.45 -2.39 -0.02 2.31 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 2.37 4.85 -2.39 -0.01 2.35 16 32 H 0.26 15.54 8.73 -92.71 -0.81 14.73 16 33 H 0.05 1.38 8.09 -2.39 -0.02 1.36 16 34 H 0.11 1.69 6.44 -2.39 -0.02 1.67 16 35 H 0.08 2.08 6.33 -2.39 -0.02 2.06 16 36 H 0.13 2.05 6.92 -2.39 -0.02 2.03 16 37 H 0.11 2.19 7.62 -2.39 -0.02 2.17 16 38 H 0.16 1.60 6.29 -2.91 -0.02 1.58 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.11 0.76 8.06 -2.39 -0.02 0.74 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.42 4.58 8.84 -92.71 -0.82 3.76 16 Total: -1.00 -81.34 365.37 3.24 -78.10 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.05 Total: 11.84 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.53 Total: 1.44 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.61 Total: -91.38 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.52 Total: -52.20 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.80 Total: 52.21 kcal Total: -81.34 3.24 -78.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349369070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.492 kcal (2) G-P(sol) polarization free energy of solvation -81.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds