Wall clock time and date at job start Tue Mar 31 2020 16:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47219 * 2 1 4 4 O 1.21283 * 120.00184 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00134 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99952 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47259 * 325.00278 * 6 5 3 8 8 C 1.50700 * 109.47208 * 204.99691 * 6 5 3 9 9 O 1.21278 * 119.99680 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00318 * 180.02562 * 8 6 5 11 11 C 1.47583 * 134.49494 * 180.02562 * 10 8 6 12 12 C 1.53945 * 86.11541 * 204.65773 * 11 10 8 13 13 O 1.42903 * 113.74155 * 90.74233 * 12 11 10 14 14 C 1.50704 * 113.74101 * 221.93630 * 12 11 10 15 15 H 1.07996 * 119.99852 * 358.07848 * 14 12 11 16 16 C 1.37883 * 119.99641 * 178.07674 * 14 12 11 17 17 N 1.31510 * 120.00287 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99749 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47063 * 90.00014 * 18 16 14 20 20 H 1.48503 * 109.47292 * 210.00273 * 18 16 14 21 21 H 1.48506 * 109.47342 * 330.00355 * 18 16 14 22 22 C 1.47935 * 134.50020 * 0.03528 * 10 8 6 23 23 C 1.50702 * 109.46717 * 85.00147 * 6 5 3 24 24 C 1.38232 * 120.00153 * 39.72768 * 23 6 5 25 25 C 1.38246 * 119.99895 * 179.80586 * 24 23 6 26 26 C 1.38238 * 119.99748 * 0.40140 * 25 24 23 27 27 C 1.38235 * 120.00051 * 359.84773 * 26 25 24 28 28 C 1.38233 * 120.00180 * 359.96130 * 27 26 25 29 29 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46665 * 299.99827 * 1 2 3 31 31 H 1.08995 * 109.47263 * 60.00347 * 1 2 3 32 32 H 1.08998 * 109.46963 * 239.99723 * 2 1 3 33 33 H 1.09006 * 109.46835 * 119.99806 * 2 1 3 34 34 H 0.96998 * 119.99567 * 359.97438 * 5 3 2 35 35 H 1.08996 * 113.76772 * 90.36065 * 11 10 8 36 36 H 1.08991 * 113.86922 * 318.97468 * 11 10 8 37 37 H 0.96700 * 114.00311 * 181.92380 * 13 12 11 38 38 H 0.96996 * 120.00241 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.86757 * 41.07474 * 22 10 8 40 40 H 1.09004 * 113.76551 * 269.58365 * 22 10 8 41 41 H 1.07998 * 120.00207 * 359.97438 * 24 23 6 42 42 H 1.07996 * 119.99540 * 180.22260 * 25 24 23 43 43 H 1.07997 * 119.99409 * 179.83244 * 26 25 24 44 44 H 1.08005 * 119.99779 * 179.97438 * 27 26 25 45 45 H 1.07996 * 119.99944 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0482 -0.0011 7 1 3.1730 3.6712 -0.5904 8 6 5.2271 3.0925 -0.6020 9 8 5.7517 2.0709 -0.9918 10 7 5.8794 4.2672 -0.7061 11 6 7.1999 4.6746 -1.2242 12 6 7.0823 5.8824 -0.2769 13 8 7.6373 5.6527 1.0198 14 6 7.5394 7.1810 -0.8898 15 1 7.9350 7.1941 -1.8946 16 6 7.4526 8.3524 -0.1677 17 7 6.9713 8.3363 1.0561 18 14 8.0185 9.9622 -0.9276 19 1 6.8801 10.6039 -1.6329 20 1 8.5125 10.8674 0.1409 21 1 9.1130 9.6951 -1.8952 22 6 5.5596 5.6662 -0.3470 23 6 3.8969 3.5634 1.4142 24 6 4.3246 2.7363 2.4358 25 6 4.3754 3.2102 3.7335 26 6 3.9905 4.5087 4.0107 27 6 3.5579 5.3342 2.9897 28 6 3.5110 4.8616 1.6916 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.9877 0.9297 -0.0005 35 1 7.1936 4.9428 -2.2807 36 1 8.0063 3.9892 -0.9642 37 1 7.5393 6.3986 1.6274 38 1 6.9105 9.1603 1.5642 39 1 5.0562 5.7707 0.6141 40 1 5.0729 6.2247 -1.1466 41 1 4.6217 1.7207 2.2199 42 1 4.7129 2.5650 4.5311 43 1 4.0276 4.8780 5.0248 44 1 3.2569 6.3486 3.2064 45 1 3.1726 5.5064 0.8941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356873395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:40 Heat of formation + Delta-G solvation = -57.512706 kcal Electronic energy + Delta-G solvation = -29594.218416 eV Core-core repulsion = 25578.008134 eV Total energy + Delta-G solvation = -4016.210283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.55520 -39.25658 -38.55465 -37.47782 -34.64535 -33.99697 -32.95564 -32.23368 -31.30429 -30.64016 -28.92112 -26.95974 -25.38231 -25.20623 -23.86373 -22.38154 -21.68415 -20.23041 -19.99842 -18.50285 -17.62774 -17.14726 -17.08980 -16.34937 -15.73230 -15.67411 -15.31382 -15.21303 -14.84973 -14.50635 -14.30483 -14.13296 -13.60923 -13.42751 -13.15036 -13.08434 -12.75621 -12.51938 -12.42299 -12.35478 -12.22190 -11.89668 -11.87810 -11.57916 -11.30527 -11.15110 -11.09363 -10.97741 -10.80403 -10.53668 -10.30682 -9.93236 -9.85439 -9.40070 -9.10121 -8.79478 -8.69360 -8.52408 -8.24115 -7.91788 -6.40662 -4.51101 1.53691 1.68177 2.63354 2.91165 3.01930 3.13088 3.21780 3.24997 3.60311 4.07100 4.17455 4.66925 4.79065 4.85547 4.89308 4.95012 4.97983 5.06306 5.23932 5.32885 5.37843 5.47944 5.54631 5.64235 5.72990 5.79289 5.84012 5.92947 6.06717 6.09127 6.14978 6.23744 6.31209 6.34093 6.46296 6.54400 6.66853 6.69073 6.76433 6.79755 7.06599 7.22489 7.51508 7.61081 7.79787 8.21809 8.33092 8.51619 8.55211 9.19934 9.41328 10.65708 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.003791 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.586518 B = 7384.503519 C = 8100.591286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 C 0.514 3.486 4 O -0.539 6.539 5 N -0.710 5.710 6 C 0.175 3.825 7 H 0.115 0.885 8 C 0.530 3.470 9 O -0.563 6.563 10 N -0.619 5.619 11 C 0.112 3.888 12 C 0.243 3.757 13 O -0.570 6.570 14 C -0.539 4.539 15 H 0.071 0.929 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.063 3.937 23 C -0.090 4.090 24 C -0.100 4.100 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.111 4.111 28 C -0.090 4.090 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.273 0.727 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 -10.147 2.833 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 C 0.301 3.699 4 O -0.415 6.415 5 N -0.363 5.363 6 C 0.067 3.933 7 H 0.132 0.868 8 C 0.318 3.682 9 O -0.444 6.444 10 N -0.351 5.351 11 C -0.009 4.009 12 C 0.201 3.799 13 O -0.382 6.382 14 C -0.577 4.577 15 H 0.089 0.911 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.059 4.059 23 C -0.092 4.092 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.109 4.109 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.246 0.754 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.219 -10.646 2.534 14.309 hybrid contribution 0.474 1.170 -0.137 1.270 sum -8.745 -9.476 2.397 13.115 Atomic orbital electron populations 1.21521 0.92983 1.01428 1.03405 1.21611 0.98576 0.93576 1.04468 1.20788 0.81679 0.92018 0.75450 1.90702 1.55167 1.46466 1.49167 1.45758 1.07494 1.07672 1.75336 1.19479 0.94485 0.84974 0.94382 0.86759 1.19813 0.86129 0.83110 0.79138 1.90620 1.68361 1.33204 1.52187 1.50140 1.19343 1.06689 1.58961 1.23519 0.83339 0.95423 0.98646 1.19771 0.87030 0.90738 0.82373 1.86064 1.81594 1.46304 1.24203 1.21487 1.43638 0.91191 1.01408 0.91120 1.25046 0.93437 0.99646 0.94767 1.69401 1.45012 1.29070 1.09919 0.86366 0.79174 0.82190 0.78996 1.20322 1.20919 1.19595 1.24794 1.03922 0.76745 1.00464 1.19697 1.00957 0.94860 0.93655 1.20787 0.99067 0.99276 0.92667 1.21010 1.00653 0.96134 0.96266 1.21107 0.98957 0.94005 0.99129 1.21071 0.99575 0.99664 0.92578 1.20938 0.98351 0.94467 0.97094 0.92167 0.91963 0.91976 0.88805 0.88883 0.75409 0.89482 0.91041 0.75375 0.91709 0.89533 0.90010 0.86758 0.86365 0.86274 0.85788 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.14 -1.33 6.42 -27.89 -0.18 -1.51 16 3 C 0.51 7.08 7.79 -10.99 -0.09 6.99 16 4 O -0.54 -9.31 15.64 5.55 0.09 -9.22 16 5 N -0.71 -10.12 4.18 -56.07 -0.23 -10.35 16 6 C 0.18 2.95 2.42 -70.23 -0.17 2.78 16 7 H 0.11 1.98 7.44 -51.93 -0.39 1.59 16 8 C 0.53 10.40 7.43 -10.99 -0.08 10.32 16 9 O -0.56 -11.94 16.57 5.56 0.09 -11.85 16 10 N -0.62 -12.70 3.57 -178.01 -0.64 -13.34 16 11 C 0.11 2.39 8.23 -2.97 -0.02 2.37 16 12 C 0.24 5.64 1.40 -90.84 -0.13 5.51 16 13 O -0.57 -14.29 13.49 -35.23 -0.48 -14.77 16 14 C -0.54 -13.17 8.61 -34.44 -0.30 -13.47 16 15 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 17 N -0.89 -21.91 11.20 55.43 0.62 -21.29 16 18 Si 0.91 19.11 29.54 -169.99 -5.02 14.09 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C 0.06 1.31 7.37 -2.76 -0.02 1.29 16 23 C -0.09 -1.51 4.49 -104.62 -0.47 -1.98 16 24 C -0.10 -1.57 9.32 -39.58 -0.37 -1.94 16 25 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.11 -1.63 10.05 -39.58 -0.40 -2.03 16 27 C -0.11 -1.71 10.05 -39.58 -0.40 -2.10 16 28 C -0.09 -1.50 6.75 -39.58 -0.27 -1.76 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.41 5.34 7.79 -40.82 -0.32 5.02 16 35 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.39 9.97 6.60 45.56 0.30 10.27 16 38 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 39 H 0.09 1.80 4.38 -51.93 -0.23 1.57 16 40 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 41 H 0.11 1.65 7.71 -52.49 -0.40 1.24 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 45 H 0.12 1.98 7.41 -52.49 -0.39 1.60 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -29.33 377.05 -8.53 -37.86 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -5.61 Total: 20.09 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -3.04 Total: 3.09 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.25 Total: -44.98 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.30 Total: -35.84 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.33 -8.53 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356873395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.649 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds