Wall clock time and date at job start Tue Mar 31 2020 16:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47219 * 2 1 4 4 O 1.21283 * 120.00184 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00134 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99952 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47259 * 325.00278 * 6 5 3 8 8 C 1.50700 * 109.47208 * 204.99691 * 6 5 3 9 9 O 1.21278 * 119.99680 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00318 * 180.02562 * 8 6 5 11 11 C 1.47583 * 134.49494 * 180.02562 * 10 8 6 12 12 C 1.53945 * 86.11541 * 204.65773 * 11 10 8 13 13 O 1.42903 * 113.74155 * 90.74233 * 12 11 10 14 14 C 1.50704 * 113.74101 * 221.93630 * 12 11 10 15 15 H 1.07996 * 119.99852 * 358.07848 * 14 12 11 16 16 C 1.37883 * 119.99641 * 178.07674 * 14 12 11 17 17 N 1.31510 * 120.00287 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99749 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47063 * 90.00014 * 18 16 14 20 20 H 1.48503 * 109.47292 * 210.00273 * 18 16 14 21 21 H 1.48506 * 109.47342 * 330.00355 * 18 16 14 22 22 C 1.47935 * 134.50020 * 0.03528 * 10 8 6 23 23 C 1.50702 * 109.46717 * 85.00147 * 6 5 3 24 24 C 1.38232 * 120.00153 * 39.72768 * 23 6 5 25 25 C 1.38246 * 119.99895 * 179.80586 * 24 23 6 26 26 C 1.38238 * 119.99748 * 0.40140 * 25 24 23 27 27 C 1.38235 * 120.00051 * 359.84773 * 26 25 24 28 28 C 1.38233 * 120.00180 * 359.96130 * 27 26 25 29 29 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46665 * 299.99827 * 1 2 3 31 31 H 1.08995 * 109.47263 * 60.00347 * 1 2 3 32 32 H 1.08998 * 109.46963 * 239.99723 * 2 1 3 33 33 H 1.09006 * 109.46835 * 119.99806 * 2 1 3 34 34 H 0.96998 * 119.99567 * 359.97438 * 5 3 2 35 35 H 1.08996 * 113.76772 * 90.36065 * 11 10 8 36 36 H 1.08991 * 113.86922 * 318.97468 * 11 10 8 37 37 H 0.96700 * 114.00311 * 181.92380 * 13 12 11 38 38 H 0.96996 * 120.00241 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.86757 * 41.07474 * 22 10 8 40 40 H 1.09004 * 113.76551 * 269.58365 * 22 10 8 41 41 H 1.07998 * 120.00207 * 359.97438 * 24 23 6 42 42 H 1.07996 * 119.99540 * 180.22260 * 25 24 23 43 43 H 1.07997 * 119.99409 * 179.83244 * 26 25 24 44 44 H 1.08005 * 119.99779 * 179.97438 * 27 26 25 45 45 H 1.07996 * 119.99944 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0482 -0.0011 7 1 3.1730 3.6712 -0.5904 8 6 5.2271 3.0925 -0.6020 9 8 5.7517 2.0709 -0.9918 10 7 5.8794 4.2672 -0.7061 11 6 7.1999 4.6746 -1.2242 12 6 7.0823 5.8824 -0.2769 13 8 7.6373 5.6527 1.0198 14 6 7.5394 7.1810 -0.8898 15 1 7.9350 7.1941 -1.8946 16 6 7.4526 8.3524 -0.1677 17 7 6.9713 8.3363 1.0561 18 14 8.0185 9.9622 -0.9276 19 1 6.8801 10.6039 -1.6329 20 1 8.5125 10.8674 0.1409 21 1 9.1130 9.6951 -1.8952 22 6 5.5596 5.6662 -0.3470 23 6 3.8969 3.5634 1.4142 24 6 4.3246 2.7363 2.4358 25 6 4.3754 3.2102 3.7335 26 6 3.9905 4.5087 4.0107 27 6 3.5579 5.3342 2.9897 28 6 3.5110 4.8616 1.6916 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.9877 0.9297 -0.0005 35 1 7.1936 4.9428 -2.2807 36 1 8.0063 3.9892 -0.9642 37 1 7.5393 6.3986 1.6274 38 1 6.9105 9.1603 1.5642 39 1 5.0562 5.7707 0.6141 40 1 5.0729 6.2247 -1.1466 41 1 4.6217 1.7207 2.2199 42 1 4.7129 2.5650 4.5311 43 1 4.0276 4.8780 5.0248 44 1 3.2569 6.3486 3.2064 45 1 3.1726 5.5064 0.8941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356873395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:36 Heat of formation + Delta-G solvation = -76.953867 kcal Electronic energy + Delta-G solvation = -29595.061448 eV Core-core repulsion = 25578.008134 eV Total energy + Delta-G solvation = -4017.053315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.93190 -40.65944 -39.79161 -39.09932 -35.92880 -35.80815 -34.12384 -33.84919 -32.46704 -31.81840 -30.53544 -28.37868 -27.05208 -26.82312 -24.86531 -23.56623 -22.97085 -21.74438 -21.24214 -20.05845 -19.31876 -18.50746 -18.37102 -17.72593 -17.18773 -17.06629 -16.79099 -16.41844 -16.28136 -15.95127 -15.82664 -15.46126 -14.96398 -14.68283 -14.50769 -14.33910 -14.27181 -13.94412 -13.86510 -13.73453 -13.41509 -13.38251 -13.16110 -12.80041 -12.75211 -12.63924 -12.26430 -12.23765 -12.17260 -12.02860 -11.96249 -11.50273 -11.10696 -11.02300 -10.65186 -10.37341 -10.30967 -9.80163 -9.62373 -9.57393 -8.24437 -6.41091 0.33009 0.48606 1.39385 1.46175 1.49372 1.53690 1.58946 1.65348 2.26693 2.41446 2.82051 2.98459 3.36204 3.58180 3.74035 3.76244 3.84826 4.08088 4.15809 4.17761 4.23022 4.25720 4.27519 4.41706 4.58761 4.59212 4.65418 4.72004 4.75303 4.85324 4.96738 4.98970 4.99689 5.06433 5.07972 5.16052 5.24490 5.36977 5.51363 5.57408 5.59502 5.74266 5.94283 6.06687 6.42975 6.63511 6.69940 6.92456 7.16292 7.31880 7.46265 8.81020 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.003791 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.586518 B = 7384.503519 C = 8100.591286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.510 3.490 4 O -0.579 6.579 5 N -0.704 5.704 6 C 0.185 3.815 7 H 0.104 0.896 8 C 0.529 3.471 9 O -0.580 6.580 10 N -0.621 5.621 11 C 0.112 3.888 12 C 0.226 3.774 13 O -0.582 6.582 14 C -0.559 4.559 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.909 5.909 18 Si 0.963 3.037 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.075 3.925 23 C -0.105 4.105 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.110 4.110 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.387 0.613 38 H 0.275 0.725 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.136 0.864 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -11.035 3.420 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.174 4.174 3 C 0.299 3.701 4 O -0.458 6.458 5 N -0.358 5.358 6 C 0.076 3.924 7 H 0.122 0.878 8 C 0.318 3.682 9 O -0.462 6.462 10 N -0.353 5.353 11 C -0.010 4.010 12 C 0.185 3.815 13 O -0.393 6.393 14 C -0.597 4.597 15 H 0.088 0.912 16 C -0.164 4.164 17 N -0.549 5.549 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.047 4.047 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.134 4.134 27 C -0.141 4.141 28 C -0.129 4.129 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.254 0.746 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.241 0.759 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.142 0.858 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.154 0.846 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.523 -11.566 3.117 15.303 hybrid contribution 0.578 1.419 -0.286 1.559 sum -8.944 -10.147 2.831 13.820 Atomic orbital electron populations 1.21533 0.92934 1.02841 1.01929 1.21707 0.98446 0.90452 1.06789 1.21683 0.80869 0.93590 0.73985 1.90686 1.55952 1.48177 1.50961 1.45775 1.08043 1.06681 1.75285 1.19231 0.92279 0.86511 0.94374 0.87791 1.20274 0.86960 0.82385 0.78563 1.90598 1.69155 1.33547 1.52862 1.50108 1.19112 1.06924 1.59173 1.23521 0.83680 0.94571 0.99192 1.19990 0.88395 0.91252 0.81847 1.86048 1.82126 1.46175 1.24988 1.21702 1.44301 0.92046 1.01643 0.91175 1.25667 0.93447 1.02106 0.95175 1.69460 1.45151 1.29725 1.10533 0.85471 0.78646 0.78873 0.78111 1.19902 1.20888 1.19701 1.24589 1.02393 0.76979 1.00709 1.19757 1.02001 0.95232 0.93696 1.21035 0.99194 0.99745 0.93142 1.21402 0.99687 0.96618 0.96494 1.21491 0.97797 0.93884 1.00200 1.21345 0.99642 1.00607 0.92463 1.21054 0.99354 0.94694 0.97776 0.89218 0.93471 0.93499 0.86495 0.86244 0.74569 0.87858 0.91827 0.75945 0.91512 0.89480 0.89580 0.85771 0.83472 0.83470 0.84577 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.20 71.98 0.66 -1.59 16 2 C -0.13 -2.19 6.42 29.85 0.19 -2.00 16 3 C 0.51 13.64 7.79 87.65 0.68 14.32 16 4 O -0.58 -20.20 15.64 -3.04 -0.05 -20.25 16 5 N -0.70 -19.63 4.18 -449.69 -1.88 -21.51 16 6 C 0.19 6.28 2.42 43.50 0.11 6.38 16 7 H 0.10 3.72 7.44 -2.39 -0.02 3.70 16 8 C 0.53 20.77 7.43 87.66 0.65 21.42 16 9 O -0.58 -24.40 16.57 -3.02 -0.05 -24.45 16 10 N -0.62 -25.63 3.57 -839.33 -3.00 -28.62 16 11 C 0.11 4.80 8.23 86.49 0.71 5.51 16 12 C 0.23 10.59 1.40 -10.88 -0.02 10.58 16 13 O -0.58 -29.52 13.49 -148.98 -2.01 -31.53 16 14 C -0.56 -27.31 8.61 25.60 0.22 -27.09 16 15 H 0.07 3.35 7.81 -2.91 -0.02 3.32 16 16 C 0.04 1.80 5.39 84.66 0.46 2.26 16 17 N -0.91 -44.41 11.20 21.45 0.24 -44.16 16 18 Si 0.96 38.80 29.54 68.60 2.03 40.83 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 C 0.08 3.18 7.37 86.42 0.64 3.81 16 23 C -0.11 -3.53 4.49 -19.86 -0.09 -3.62 16 24 C -0.11 -3.44 9.32 22.27 0.21 -3.23 16 25 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 26 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 27 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 28 C -0.11 -3.71 6.75 22.27 0.15 -3.56 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 32 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.42 10.36 7.79 -92.71 -0.72 9.63 16 35 H 0.10 4.01 8.09 -2.39 -0.02 3.99 16 36 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.39 19.96 6.60 -74.06 -0.49 19.47 16 38 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 39 H 0.09 3.68 4.38 -2.39 -0.01 3.67 16 40 H 0.09 3.51 8.09 -2.39 -0.02 3.49 16 41 H 0.12 3.42 7.71 -2.91 -0.02 3.39 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 44 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 45 H 0.12 3.95 7.41 -2.91 -0.02 3.93 16 Total: -1.00 -62.71 377.05 0.34 -62.37 By element: Atomic # 1 Polarization: 53.81 SS G_CDS: -0.18 Total: 53.63 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.24 Total: 13.69 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -4.64 Total: -94.30 kcal Atomic # 8 Polarization: -74.12 SS G_CDS: -2.11 Total: -76.23 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -62.71 0.34 -62.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356873395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.584 kcal (2) G-P(sol) polarization free energy of solvation -62.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds