Wall clock time and date at job start Tue Mar 31 2020 16:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47463 * 2 1 4 4 O 1.21288 * 120.00052 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00382 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00308 * 184.93341 * 5 3 2 7 7 H 1.08993 * 109.47318 * 173.52550 * 6 5 3 8 8 C 1.50700 * 109.47258 * 293.53180 * 6 5 3 9 9 O 1.21278 * 119.99822 * 19.99702 * 8 6 5 10 10 N 1.34777 * 119.99666 * 199.99761 * 8 6 5 11 11 C 1.47063 * 136.06177 * 359.63134 * 10 8 6 12 12 C 1.53231 * 88.08373 * 207.20093 * 11 10 8 13 13 O 1.42906 * 114.19945 * 87.72422 * 12 11 10 14 14 C 1.50695 * 114.32688 * 220.46792 * 12 11 10 15 15 H 1.07998 * 120.00133 * 93.76071 * 14 12 11 16 16 C 1.37881 * 120.00151 * 273.76038 * 14 12 11 17 17 N 1.31513 * 119.99863 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00124 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47024 * 89.99808 * 18 16 14 20 20 H 1.48499 * 109.47090 * 210.00012 * 18 16 14 21 21 H 1.48499 * 109.47120 * 330.00066 * 18 16 14 22 22 C 1.47064 * 136.05146 * 179.97438 * 10 8 6 23 23 C 1.50707 * 109.47020 * 53.52962 * 6 5 3 24 24 C 1.38234 * 119.99677 * 45.78805 * 23 6 5 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 6 26 26 C 1.38231 * 120.00385 * 0.02562 * 25 24 23 27 27 C 1.38246 * 119.99618 * 0.06378 * 26 25 24 28 28 C 1.38225 * 119.99917 * 225.77287 * 23 6 5 29 29 H 1.08999 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46518 * 299.99639 * 1 2 3 31 31 H 1.08995 * 109.46911 * 59.99412 * 1 2 3 32 32 H 1.09001 * 109.46651 * 239.99828 * 2 1 3 33 33 H 1.08997 * 109.47382 * 120.00376 * 2 1 3 34 34 H 0.97001 * 119.99962 * 4.93518 * 5 3 2 35 35 H 1.09003 * 113.46538 * 321.93193 * 11 10 8 36 36 H 1.08994 * 113.46838 * 92.36707 * 11 10 8 37 37 H 0.96696 * 113.99651 * 86.30223 * 13 12 11 38 38 H 0.97002 * 119.99903 * 179.97438 * 17 16 14 39 39 H 1.09000 * 113.47311 * 267.62167 * 22 10 8 40 40 H 1.08999 * 113.47228 * 38.01486 * 22 10 8 41 41 H 1.07997 * 120.00332 * 359.97438 * 24 23 6 42 42 H 1.08003 * 119.99751 * 179.72512 * 25 24 23 43 43 H 1.07990 * 120.00427 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.99759 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.00511 * 359.97438 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8468 3.0436 0.1086 7 1 4.9323 3.0366 0.2067 8 6 3.4590 3.8140 -1.1272 9 8 2.5554 3.4158 -1.8313 10 7 4.1163 4.9456 -1.4497 11 6 5.2190 5.7303 -0.8744 12 6 4.6179 6.9703 -1.5446 13 8 3.6332 7.6427 -0.7569 14 6 5.6347 7.9030 -2.1503 15 1 5.8982 7.8108 -3.1936 16 6 6.2288 8.8743 -1.3725 17 7 5.9076 8.9869 -0.1022 18 14 7.4898 10.0300 -2.1231 19 1 6.8021 11.2319 -2.6598 20 1 8.4655 10.4416 -1.0820 21 1 8.2043 9.3355 -3.2242 22 6 4.0423 5.9421 -2.5287 23 6 3.2371 3.6988 1.3211 24 6 3.2009 3.0236 2.5268 25 6 2.6420 3.6249 3.6390 26 6 2.1190 4.9010 3.5455 27 6 2.1535 5.5754 2.3393 28 6 2.7143 4.9750 1.2275 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9873 0.9328 -0.0732 35 1 5.1984 5.7744 0.2145 36 1 6.1980 5.4561 -1.2672 37 1 3.9992 8.2895 -0.1382 38 1 6.3258 9.6699 0.4451 39 1 4.7050 5.7250 -3.3664 40 1 3.0232 6.1652 -2.8445 41 1 3.6091 2.0265 2.5998 42 1 2.6097 3.0956 4.5800 43 1 1.6820 5.3705 4.4143 44 1 1.7445 6.5723 2.2661 45 1 2.7432 5.5027 0.2858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356873396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:48 Heat of formation + Delta-G solvation = -44.771149 kcal Electronic energy + Delta-G solvation = -29929.902170 eV Core-core repulsion = 25914.244403 eV Total energy + Delta-G solvation = -4015.657767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59168 -39.12546 -38.38381 -37.17644 -34.57634 -33.99621 -32.76513 -32.19232 -31.19182 -30.50446 -28.84316 -26.91624 -25.23509 -25.09126 -23.79581 -22.30773 -21.49781 -20.51081 -19.72439 -18.20739 -17.53991 -17.26457 -16.99043 -16.17472 -15.87011 -15.31215 -15.24401 -14.92838 -14.66819 -14.29157 -14.19028 -13.88122 -13.82412 -13.39798 -13.01270 -12.87466 -12.72320 -12.52282 -12.34661 -12.14478 -11.99464 -11.82898 -11.72325 -11.55939 -11.15668 -11.08666 -10.99279 -10.85950 -10.71227 -10.48364 -10.26037 -9.86012 -9.59547 -9.38879 -8.85377 -8.71659 -8.55322 -8.38309 -8.31202 -7.80671 -6.40697 -4.51061 1.60381 1.77558 2.90648 3.11642 3.13983 3.22020 3.23716 3.31022 3.69051 4.14538 4.17617 4.76954 4.81327 4.95507 4.96101 5.05934 5.11455 5.17328 5.22290 5.32255 5.47111 5.54695 5.61748 5.75073 5.82269 5.92712 5.93519 5.96933 6.18240 6.22856 6.25154 6.34971 6.41154 6.45690 6.52264 6.67051 6.70218 6.72509 6.89217 6.94893 7.11809 7.34336 7.62403 7.63675 7.80450 8.49907 8.52969 8.55057 8.81659 9.20337 9.49055 10.65606 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003861 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.275480 B = 7250.474207 C = 8243.469104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.140 4.140 3 C 0.511 3.489 4 O -0.496 6.496 5 N -0.723 5.723 6 C 0.180 3.820 7 H 0.112 0.888 8 C 0.529 3.471 9 O -0.532 6.532 10 N -0.639 5.639 11 C 0.069 3.931 12 C 0.243 3.757 13 O -0.570 6.570 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.107 3.893 23 C -0.082 4.082 24 C -0.107 4.107 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.084 4.084 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.394 0.606 38 H 0.274 0.726 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -14.194 6.153 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.297 3.703 4 O -0.367 6.367 5 N -0.376 5.376 6 C 0.072 3.928 7 H 0.129 0.871 8 C 0.316 3.684 9 O -0.408 6.408 10 N -0.374 5.374 11 C -0.055 4.055 12 C 0.201 3.799 13 O -0.383 6.383 14 C -0.572 4.572 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.015 4.015 23 C -0.083 4.083 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.103 4.103 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.950 -14.210 5.676 15.583 hybrid contribution 1.644 0.544 0.011 1.732 sum -1.306 -13.666 5.687 14.860 Atomic orbital electron populations 1.21505 0.93178 1.01087 1.03539 1.21583 0.98620 0.94140 1.03673 1.20599 0.82067 0.91641 0.76009 1.90765 1.54616 1.45975 1.45352 1.45710 1.07660 1.06775 1.77495 1.19538 0.98903 0.82672 0.91730 0.87057 1.20021 0.82487 0.79444 0.86441 1.90677 1.29723 1.67485 1.52911 1.49793 1.35811 1.22635 1.29151 1.24207 0.89810 0.91806 0.99631 1.19449 0.85853 0.87418 0.87193 1.86035 1.36016 1.59121 1.57116 1.21425 1.22304 1.16031 0.97459 0.91023 1.25061 0.96488 0.96808 0.94593 1.69261 1.43825 1.34647 1.05918 0.86335 0.80512 0.80726 0.78963 1.20265 1.20939 1.19592 1.23323 1.01157 0.85094 0.91932 1.19485 1.00548 0.95110 0.93166 1.20706 1.00381 0.99178 0.92290 1.20935 1.00180 0.95715 0.97999 1.21119 0.99950 0.95091 0.97642 1.21152 0.99190 0.99985 0.92651 1.21517 0.94466 0.94073 1.00235 0.92464 0.92079 0.91845 0.89374 0.89433 0.76588 0.91586 0.90189 0.74952 0.91591 0.89858 0.91652 0.86823 0.86597 0.86518 0.85943 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.20 37.16 0.34 -1.17 16 2 C -0.14 -1.46 6.42 -27.88 -0.18 -1.64 16 3 C 0.51 7.82 6.37 -10.99 -0.07 7.75 16 4 O -0.50 -10.14 13.07 -16.46 -0.22 -10.35 16 5 N -0.72 -9.67 4.68 -56.07 -0.26 -9.94 16 6 C 0.18 2.93 3.22 -70.23 -0.23 2.71 16 7 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 8 C 0.53 10.89 5.66 -10.99 -0.06 10.82 16 9 O -0.53 -12.72 14.97 -16.45 -0.25 -12.96 16 10 N -0.64 -13.26 2.65 -185.38 -0.49 -13.75 16 11 C 0.07 1.42 7.40 -8.65 -0.06 1.36 16 12 C 0.24 5.66 1.57 -91.39 -0.14 5.51 16 13 O -0.57 -14.21 12.79 -35.23 -0.45 -14.66 16 14 C -0.53 -13.05 8.69 -34.44 -0.30 -13.35 16 15 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 17 N -0.90 -22.16 11.01 55.43 0.61 -21.55 16 18 Si 0.91 19.09 29.54 -169.99 -5.02 14.07 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 22 C 0.11 2.33 8.04 -8.50 -0.07 2.26 16 23 C -0.08 -1.41 3.95 -104.62 -0.41 -1.82 16 24 C -0.11 -1.57 9.05 -39.58 -0.36 -1.93 16 25 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 26 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 27 C -0.11 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.08 -1.65 8.55 -39.59 -0.34 -1.99 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.40 3.62 8.83 -40.82 -0.36 3.26 16 35 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 36 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 37 H 0.39 10.01 6.32 45.56 0.29 10.30 16 38 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 39 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 40 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.11 1.36 7.90 -52.49 -0.41 0.95 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 45 H 0.14 3.21 4.79 -52.49 -0.25 2.96 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -31.74 372.65 -9.38 -41.12 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -5.75 Total: 18.97 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.17 Total: 3.44 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.14 Total: -45.24 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.91 Total: -37.98 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.74 -9.38 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356873396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.650 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds