Wall clock time and date at job start Tue Mar 31 2020 16:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47463 * 2 1 4 4 O 1.21288 * 120.00052 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00382 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00308 * 184.93341 * 5 3 2 7 7 H 1.08993 * 109.47318 * 173.52550 * 6 5 3 8 8 C 1.50700 * 109.47258 * 293.53180 * 6 5 3 9 9 O 1.21278 * 119.99822 * 19.99702 * 8 6 5 10 10 N 1.34777 * 119.99666 * 199.99761 * 8 6 5 11 11 C 1.47063 * 136.06177 * 359.63134 * 10 8 6 12 12 C 1.53231 * 88.08373 * 207.20093 * 11 10 8 13 13 O 1.42906 * 114.19945 * 87.72422 * 12 11 10 14 14 C 1.50695 * 114.32688 * 220.46792 * 12 11 10 15 15 H 1.07998 * 120.00133 * 93.76071 * 14 12 11 16 16 C 1.37881 * 120.00151 * 273.76038 * 14 12 11 17 17 N 1.31513 * 119.99863 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00124 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47024 * 89.99808 * 18 16 14 20 20 H 1.48499 * 109.47090 * 210.00012 * 18 16 14 21 21 H 1.48499 * 109.47120 * 330.00066 * 18 16 14 22 22 C 1.47064 * 136.05146 * 179.97438 * 10 8 6 23 23 C 1.50707 * 109.47020 * 53.52962 * 6 5 3 24 24 C 1.38234 * 119.99677 * 45.78805 * 23 6 5 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 6 26 26 C 1.38231 * 120.00385 * 0.02562 * 25 24 23 27 27 C 1.38246 * 119.99618 * 0.06378 * 26 25 24 28 28 C 1.38225 * 119.99917 * 225.77287 * 23 6 5 29 29 H 1.08999 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46518 * 299.99639 * 1 2 3 31 31 H 1.08995 * 109.46911 * 59.99412 * 1 2 3 32 32 H 1.09001 * 109.46651 * 239.99828 * 2 1 3 33 33 H 1.08997 * 109.47382 * 120.00376 * 2 1 3 34 34 H 0.97001 * 119.99962 * 4.93518 * 5 3 2 35 35 H 1.09003 * 113.46538 * 321.93193 * 11 10 8 36 36 H 1.08994 * 113.46838 * 92.36707 * 11 10 8 37 37 H 0.96696 * 113.99651 * 86.30223 * 13 12 11 38 38 H 0.97002 * 119.99903 * 179.97438 * 17 16 14 39 39 H 1.09000 * 113.47311 * 267.62167 * 22 10 8 40 40 H 1.08999 * 113.47228 * 38.01486 * 22 10 8 41 41 H 1.07997 * 120.00332 * 359.97438 * 24 23 6 42 42 H 1.08003 * 119.99751 * 179.72512 * 25 24 23 43 43 H 1.07990 * 120.00427 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.99759 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.00511 * 359.97438 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8468 3.0436 0.1086 7 1 4.9323 3.0366 0.2067 8 6 3.4590 3.8140 -1.1272 9 8 2.5554 3.4158 -1.8313 10 7 4.1163 4.9456 -1.4497 11 6 5.2190 5.7303 -0.8744 12 6 4.6179 6.9703 -1.5446 13 8 3.6332 7.6427 -0.7569 14 6 5.6347 7.9030 -2.1503 15 1 5.8982 7.8108 -3.1936 16 6 6.2288 8.8743 -1.3725 17 7 5.9076 8.9869 -0.1022 18 14 7.4898 10.0300 -2.1231 19 1 6.8021 11.2319 -2.6598 20 1 8.4655 10.4416 -1.0820 21 1 8.2043 9.3355 -3.2242 22 6 4.0423 5.9421 -2.5287 23 6 3.2371 3.6988 1.3211 24 6 3.2009 3.0236 2.5268 25 6 2.6420 3.6249 3.6390 26 6 2.1190 4.9010 3.5455 27 6 2.1535 5.5754 2.3393 28 6 2.7143 4.9750 1.2275 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9873 0.9328 -0.0732 35 1 5.1984 5.7744 0.2145 36 1 6.1980 5.4561 -1.2672 37 1 3.9992 8.2895 -0.1382 38 1 6.3258 9.6699 0.4451 39 1 4.7050 5.7250 -3.3664 40 1 3.0232 6.1652 -2.8445 41 1 3.6091 2.0265 2.5998 42 1 2.6097 3.0956 4.5800 43 1 1.6820 5.3705 4.4143 44 1 1.7445 6.5723 2.2661 45 1 2.7432 5.5027 0.2858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356873396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:46 Heat of formation + Delta-G solvation = -66.132757 kcal Electronic energy + Delta-G solvation = -29930.828479 eV Core-core repulsion = 25914.244403 eV Total energy + Delta-G solvation = -4016.584076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00315 -40.65360 -39.60927 -38.83083 -35.87742 -35.85501 -34.10837 -33.76044 -32.39358 -31.71881 -30.49859 -28.34618 -26.91619 -26.77770 -24.87604 -23.57668 -22.78753 -21.91333 -21.17188 -19.87160 -19.20592 -18.54755 -18.31224 -17.60056 -17.36243 -17.01450 -16.48534 -16.22101 -16.13981 -15.90211 -15.59097 -15.29838 -14.98256 -14.95088 -14.47740 -14.22369 -14.11712 -14.09174 -13.76394 -13.47563 -13.40113 -13.32655 -13.03611 -12.79600 -12.75790 -12.61905 -12.21875 -12.15223 -12.08659 -11.98346 -11.96426 -11.47735 -11.10219 -10.81225 -10.67240 -10.29833 -10.05275 -9.77861 -9.59046 -9.51993 -8.26020 -6.43558 0.38927 0.53289 1.46751 1.50183 1.56553 1.59142 1.70814 2.01582 2.34208 2.41361 2.91199 2.95572 3.42293 3.63237 3.77430 3.92416 3.97828 4.11401 4.15902 4.18332 4.25722 4.30223 4.31607 4.46004 4.59723 4.62292 4.69521 4.78297 4.79534 4.90253 4.93909 4.97759 5.05393 5.07969 5.15237 5.24483 5.32873 5.41332 5.53742 5.63068 5.68503 5.73768 5.92392 6.12288 6.61947 6.64486 6.87700 7.14691 7.30516 7.50641 7.51051 8.79547 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003861 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.275480 B = 7250.474207 C = 8243.469104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C 0.501 3.499 4 O -0.556 6.556 5 N -0.707 5.707 6 C 0.185 3.815 7 H 0.141 0.859 8 C 0.523 3.477 9 O -0.572 6.572 10 N -0.636 5.636 11 C 0.088 3.912 12 C 0.224 3.776 13 O -0.583 6.583 14 C -0.553 4.553 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.915 5.915 18 Si 0.969 3.031 19 H -0.281 1.281 20 H -0.280 1.280 21 H -0.265 1.265 22 C 0.105 3.895 23 C -0.090 4.090 24 C -0.104 4.104 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.136 4.136 28 C -0.121 4.121 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.424 0.576 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.388 0.612 38 H 0.276 0.724 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.145 0.855 44 H 0.113 0.887 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -16.994 7.868 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.170 4.170 3 C 0.289 3.711 4 O -0.432 6.432 5 N -0.362 5.362 6 C 0.076 3.924 7 H 0.159 0.841 8 C 0.312 3.688 9 O -0.451 6.451 10 N -0.371 5.371 11 C -0.034 4.034 12 C 0.183 3.817 13 O -0.396 6.396 14 C -0.591 4.591 15 H 0.091 0.909 16 C -0.166 4.166 17 N -0.555 5.555 18 Si 0.795 3.205 19 H -0.207 1.207 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.018 4.018 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.154 4.154 28 C -0.140 4.140 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.244 0.756 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.061 0.939 41 H 0.167 0.833 42 H 0.175 0.825 43 H 0.163 0.837 44 H 0.132 0.868 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.099 -17.059 7.391 18.624 hybrid contribution 0.990 1.427 -0.518 1.812 sum -0.109 -15.632 6.873 17.077 Atomic orbital electron populations 1.21506 0.94114 1.02427 1.01229 1.21655 0.97687 0.91036 1.06623 1.21598 0.82002 0.93108 0.74417 1.90758 1.56162 1.48186 1.48058 1.45627 1.07890 1.06210 1.76455 1.19495 1.00440 0.83445 0.89035 0.84125 1.20923 0.81456 0.79125 0.87262 1.90649 1.31257 1.68645 1.54577 1.49790 1.35881 1.22778 1.28608 1.23952 0.90156 0.90313 0.99024 1.19698 0.85934 0.88155 0.87908 1.86041 1.37044 1.59270 1.57280 1.21648 1.22781 1.16953 0.97728 0.90854 1.25740 0.98033 0.97924 0.94916 1.69336 1.44397 1.35034 1.06751 0.85377 0.78314 0.78545 0.78308 1.20706 1.20545 1.18889 1.23339 1.00188 0.85591 0.92686 1.19578 1.00700 0.94363 0.94540 1.21093 0.99569 1.00317 0.91207 1.21447 0.98094 0.95116 0.99393 1.21451 0.99458 0.95676 0.97202 1.21249 1.00146 1.00257 0.93742 1.21347 0.97583 0.95740 0.99311 0.89131 0.93693 0.94970 0.87084 0.85407 0.73735 0.92186 0.88478 0.75618 0.91407 0.87862 0.93907 0.83324 0.82500 0.83682 0.86838 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.20 71.98 0.66 -2.15 16 2 C -0.13 -2.31 6.42 29.85 0.19 -2.12 16 3 C 0.50 14.58 6.37 87.65 0.56 15.14 16 4 O -0.56 -23.19 13.07 17.99 0.24 -22.96 16 5 N -0.71 -17.23 4.68 -449.68 -2.10 -19.34 16 6 C 0.19 5.83 3.22 43.50 0.14 5.97 16 7 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 8 C 0.52 22.04 5.66 87.66 0.50 22.53 16 9 O -0.57 -28.45 14.97 18.02 0.27 -28.18 16 10 N -0.64 -27.25 2.65 -859.31 -2.28 -29.53 16 11 C 0.09 3.72 7.40 83.09 0.61 4.34 16 12 C 0.22 10.84 1.57 -11.29 -0.02 10.82 16 13 O -0.58 -30.94 12.79 -148.98 -1.91 -32.85 16 14 C -0.55 -27.42 8.69 25.60 0.22 -27.20 16 15 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 16 C 0.03 1.68 5.39 84.66 0.46 2.14 16 17 N -0.91 -45.92 11.01 21.45 0.24 -45.68 16 18 Si 0.97 39.02 29.54 68.60 2.03 41.05 16 19 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 C 0.10 4.75 8.04 83.18 0.67 5.42 16 23 C -0.09 -3.06 3.95 -19.87 -0.08 -3.14 16 24 C -0.10 -2.74 9.05 22.27 0.20 -2.54 16 25 C -0.12 -3.01 10.05 22.27 0.22 -2.79 16 26 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 27 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 28 C -0.12 -4.95 8.55 22.27 0.19 -4.76 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 31 H 0.03 0.85 8.10 -2.39 -0.02 0.83 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.42 6.03 8.83 -92.71 -0.82 5.21 16 35 H 0.06 2.60 7.71 -2.39 -0.02 2.58 16 36 H 0.10 3.73 8.10 -2.39 -0.02 3.72 16 37 H 0.39 20.91 6.32 -74.06 -0.47 20.45 16 38 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 39 H 0.10 4.19 8.10 -2.39 -0.02 4.17 16 40 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.15 2.82 7.90 -2.91 -0.02 2.79 16 42 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.15 3.18 8.06 -2.92 -0.02 3.15 16 44 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 45 H 0.10 4.96 4.79 -2.91 -0.01 4.94 16 Total: -1.00 -74.62 372.65 1.20 -73.42 By element: Atomic # 1 Polarization: 50.55 SS G_CDS: -0.26 Total: 50.29 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 4.98 Total: 13.77 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -4.15 Total: -94.55 kcal Atomic # 8 Polarization: -82.58 SS G_CDS: -1.40 Total: -83.99 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -74.62 1.20 -73.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356873396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.289 kcal (2) G-P(sol) polarization free energy of solvation -74.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds