Wall clock time and date at job start Tue Mar 31 2020 17:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46144 * 2 1 4 4 C 1.53312 * 109.46156 * 119.96482 * 2 1 3 5 5 C 1.51187 * 108.61758 * 200.10279 * 4 2 1 6 6 O 1.21286 * 119.77206 * 108.75630 * 5 4 2 7 7 N 1.33638 * 120.46169 * 288.77237 * 5 4 2 8 8 C 1.46923 * 120.62238 * 359.66170 * 7 5 4 9 9 C 1.52758 * 108.88376 * 71.91908 * 8 7 5 10 10 N 1.46074 * 109.97842 * 278.55554 * 9 8 7 11 11 C 1.34775 * 118.73242 * 243.84553 * 10 9 8 12 12 O 1.21278 * 119.99408 * 184.22883 * 11 10 9 13 13 C 1.50693 * 120.00281 * 4.23572 * 11 10 9 14 14 C 1.50698 * 109.47240 * 179.97438 * 13 11 10 15 15 C 1.38301 * 119.93331 * 269.72270 * 14 13 11 16 16 C 1.38099 * 120.07296 * 180.28116 * 15 14 13 17 17 C 1.38871 * 119.92881 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.06885 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00013 * 185.53235 * 18 17 16 20 20 H 1.08000 * 119.99977 * 4.82989 * 19 18 17 21 21 C 1.38658 * 120.00075 * 184.82938 * 19 18 17 22 22 N 1.31559 * 119.99690 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46954 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47128 * 119.99835 * 23 21 19 26 26 H 1.48502 * 109.46798 * 240.00245 * 23 21 19 27 27 C 1.38879 * 119.86442 * 0.02562 * 17 16 15 28 28 C 1.38094 * 119.93125 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47112 * 183.39240 * 1 2 3 30 30 H 1.08999 * 109.46823 * 303.38845 * 1 2 3 31 31 H 1.09000 * 109.46984 * 63.38840 * 1 2 3 32 32 H 1.08995 * 109.61434 * 319.84632 * 4 2 1 33 33 H 1.09007 * 109.60936 * 80.18952 * 4 2 1 34 34 H 0.96994 * 119.68747 * 179.67794 * 7 5 4 35 35 H 1.08994 * 109.57826 * 191.78239 * 8 7 5 36 36 H 1.08994 * 109.58096 * 312.05156 * 8 7 5 37 37 H 1.09005 * 109.30664 * 158.40310 * 9 8 7 38 38 H 1.08993 * 109.29393 * 38.71277 * 9 8 7 39 39 H 1.09001 * 109.47554 * 59.99343 * 13 11 10 40 40 H 1.09010 * 109.46739 * 299.99435 * 13 11 10 41 41 H 1.08002 * 119.95806 * 0.27677 * 15 14 13 42 42 H 1.07994 * 120.03272 * 179.97438 * 16 15 14 43 43 H 0.97003 * 119.99891 * 180.02562 * 22 21 19 44 44 H 1.08006 * 120.03631 * 179.97438 * 27 17 16 45 45 H 1.08007 * 119.97244 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0409 -0.7220 1.2523 5 6 3.4703 -0.2988 1.5042 6 8 3.7278 0.4237 2.4437 7 7 4.4520 -0.7149 0.6986 8 6 4.1623 -1.5960 -0.4409 9 6 3.4378 -0.7900 -1.5174 10 7 2.0170 -0.6887 -1.1936 11 6 1.1209 -1.2568 -2.0248 12 8 -0.0667 -1.1215 -1.8200 13 6 1.5948 -2.0603 -3.2083 14 6 0.4040 -2.5829 -3.9699 15 6 -0.1341 -3.8156 -3.6483 16 6 -1.2216 -4.2999 -4.3482 17 6 -1.7753 -3.5473 -5.3756 18 8 -2.8448 -4.0203 -6.0651 19 6 -3.2612 -3.2944 -7.1223 20 1 -2.7023 -2.4244 -7.4337 21 6 -4.4070 -3.6651 -7.8096 22 7 -5.0874 -4.7252 -7.4305 23 14 -4.9836 -2.6599 -9.2747 24 1 -4.0503 -1.5261 -9.4952 25 1 -5.0125 -3.5203 -10.4847 26 1 -6.3465 -2.1339 -9.0085 27 6 -1.2328 -2.3097 -5.6962 28 6 -0.1446 -1.8314 -4.9933 29 1 -0.3633 -1.0258 0.0608 30 1 -0.3633 0.5655 0.8581 31 1 -0.3633 0.4603 -0.9188 32 1 1.4229 -0.4513 2.1083 33 1 1.9978 -1.8000 1.0963 34 1 5.3644 -0.4327 0.8678 35 1 5.0950 -1.9897 -0.8445 36 1 3.5292 -2.4205 -0.1133 37 1 3.5556 -1.2872 -2.4803 38 1 3.8697 0.2093 -1.5710 39 1 2.1992 -2.8980 -2.8603 40 1 2.1944 -1.4261 -3.8614 41 1 0.2969 -4.4002 -2.8489 42 1 -1.6410 -5.2628 -4.0968 43 1 -5.8888 -4.9848 -7.9115 44 1 -1.6610 -1.7222 -6.4950 45 1 0.2776 -0.8689 -5.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371040387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:39 Heat of formation + Delta-G solvation = -42.848100 kcal Electronic energy + Delta-G solvation = -28293.317765 eV Core-core repulsion = 24277.743388 eV Total energy + Delta-G solvation = -4015.574378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23116 -39.71319 -38.88153 -36.96553 -36.48089 -34.92475 -33.64926 -32.36605 -31.07047 -30.14900 -28.91461 -28.23173 -26.63917 -25.15066 -23.86045 -22.86645 -21.97189 -20.85240 -20.26691 -19.22077 -17.98544 -17.76718 -17.43886 -16.99978 -16.77175 -16.29263 -15.85949 -14.93286 -14.67818 -14.50576 -14.32516 -14.19748 -13.96138 -13.64343 -13.54028 -13.47380 -13.20324 -13.07389 -12.72477 -12.67644 -12.55855 -12.34235 -12.14627 -11.91594 -11.79306 -11.58614 -11.33716 -11.25376 -10.83237 -10.75328 -10.58050 -10.41258 -10.20607 -9.76318 -9.34465 -8.90946 -8.84001 -8.78108 -8.15147 -7.16248 -6.44478 -4.02854 2.21278 2.23165 2.25272 2.60660 2.73674 2.83315 3.12759 3.14236 3.19682 3.97231 4.03601 4.30954 4.40467 4.51986 4.56449 4.61075 4.77371 4.78630 4.93200 4.98457 5.10531 5.18434 5.24365 5.28720 5.30237 5.33192 5.49046 5.60493 5.68637 5.71613 5.83985 6.04005 6.18046 6.22610 6.33339 6.41957 6.54583 6.69786 6.77992 6.91031 7.05504 7.17183 7.24353 7.36537 7.45468 7.80612 7.84028 8.00755 8.19895 9.01393 9.72010 10.73714 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.002241 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.836462 B =12492.420469 C =12668.327477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.155 3.845 3 H 0.072 0.928 4 C -0.155 4.155 5 C 0.519 3.481 6 O -0.549 6.549 7 N -0.727 5.727 8 C 0.088 3.912 9 C 0.085 3.915 10 N -0.621 5.621 11 C 0.505 3.495 12 O -0.501 6.501 13 C -0.082 4.082 14 C -0.172 4.172 15 C -0.059 4.059 16 C -0.192 4.192 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.401 0.599 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.143 6.443 11.536 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.090 0.910 4 C -0.196 4.196 5 C 0.306 3.694 6 O -0.427 6.427 7 N -0.380 5.380 8 C -0.037 4.037 9 C -0.039 4.039 10 N -0.357 5.357 11 C 0.294 3.706 12 O -0.374 6.374 13 C -0.122 4.122 14 C -0.173 4.173 15 C -0.077 4.077 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.081 6.081 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.497 5.497 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.251 4.251 28 C -0.074 4.074 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.237 0.763 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.045 6.513 12.051 23.460 hybrid contribution 0.273 0.618 -0.693 0.968 sum 19.318 7.131 11.358 23.517 Atomic orbital electron populations 1.22352 0.90943 1.03897 1.01749 1.20970 0.96928 0.94785 0.82169 0.90958 1.22572 0.92869 1.03008 1.01132 1.20657 0.88129 0.79402 0.81239 1.90765 1.84413 1.37212 1.30268 1.45953 1.10818 1.51167 1.30016 1.22165 1.01952 0.92986 0.86597 1.22054 0.80925 1.01760 0.99190 1.47971 1.06350 1.56809 1.24580 1.21202 0.86446 0.79148 0.83767 1.90852 1.16705 1.58084 1.71806 1.20534 0.97916 0.99254 0.94498 1.18611 1.00577 0.97056 1.01039 1.20369 0.95105 0.94818 0.97431 1.20144 0.99905 1.01355 0.99714 1.19393 0.87949 0.91511 0.90851 1.83989 1.38742 1.46791 1.38611 1.21366 1.09824 1.10899 1.04546 0.89054 1.25294 0.95219 0.96906 0.99174 1.70051 1.16544 1.23536 1.39610 0.85648 0.78953 0.79074 0.79761 1.19117 1.20155 1.20150 1.21108 1.00699 0.98051 1.05259 1.20495 0.95067 0.97345 0.94524 0.90518 0.94295 0.89816 0.87277 0.88687 0.76297 0.88056 0.89819 0.87576 0.90470 0.89029 0.89118 0.87481 0.86606 0.92084 0.85635 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 7.43 37.16 0.28 -1.24 16 2 C 0.16 1.45 3.21 -67.95 -0.22 1.23 16 3 H 0.07 0.69 7.95 -51.93 -0.41 0.27 16 4 C -0.15 -1.30 4.99 -27.48 -0.14 -1.44 16 5 C 0.52 4.87 7.11 -11.25 -0.08 4.79 16 6 O -0.55 -7.48 17.91 5.55 0.10 -7.38 16 7 N -0.73 -4.25 5.30 -60.24 -0.32 -4.57 16 8 C 0.09 0.31 6.47 -3.94 -0.03 0.29 16 9 C 0.09 0.41 6.05 -4.40 -0.03 0.38 16 10 N -0.62 -5.30 2.78 -166.66 -0.46 -5.76 16 11 C 0.51 5.93 7.53 -10.99 -0.08 5.85 16 12 O -0.50 -8.02 10.97 5.56 0.06 -7.96 16 13 C -0.08 -0.87 4.12 -29.04 -0.12 -0.99 16 14 C -0.17 -2.74 4.38 -104.57 -0.46 -3.20 16 15 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 16 C -0.19 -4.04 9.99 -39.40 -0.39 -4.43 16 17 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 18 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 19 C -0.39 -10.93 9.45 30.89 0.29 -10.64 16 20 H 0.09 2.37 5.28 -52.49 -0.28 2.10 16 21 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 23 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 C -0.23 -5.04 9.14 -39.40 -0.36 -5.40 16 28 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 29 H 0.08 1.01 6.74 -51.93 -0.35 0.65 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.15 6.48 -51.93 -0.34 0.82 16 32 H 0.11 0.93 7.98 -51.93 -0.41 0.51 16 33 H 0.09 0.72 7.09 -51.93 -0.37 0.35 16 34 H 0.40 1.89 8.91 -40.82 -0.36 1.53 16 35 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.08 0.35 7.04 -51.93 -0.37 -0.02 16 37 H 0.11 0.34 5.58 -51.93 -0.29 0.05 16 38 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 39 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 40 H 0.09 0.75 7.40 -51.92 -0.38 0.37 16 41 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.13 2.76 5.70 -52.48 -0.30 2.46 16 45 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -35.80 363.60 -7.81 -43.61 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.94 Total: 3.84 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.46 Total: -13.09 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.02 Total: -34.94 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.16 Total: -20.44 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.80 -7.81 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371040387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.764 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds