Wall clock time and date at job start Tue Mar 31 2020 17:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46144 * 2 1 4 4 C 1.53312 * 109.46156 * 119.96482 * 2 1 3 5 5 C 1.51187 * 108.61758 * 200.10279 * 4 2 1 6 6 O 1.21286 * 119.77206 * 108.75630 * 5 4 2 7 7 N 1.33638 * 120.46169 * 288.77237 * 5 4 2 8 8 C 1.46923 * 120.62238 * 359.66170 * 7 5 4 9 9 C 1.52758 * 108.88376 * 71.91908 * 8 7 5 10 10 N 1.46074 * 109.97842 * 278.55554 * 9 8 7 11 11 C 1.34775 * 118.73242 * 243.84553 * 10 9 8 12 12 O 1.21278 * 119.99408 * 184.22883 * 11 10 9 13 13 C 1.50693 * 120.00281 * 4.23572 * 11 10 9 14 14 C 1.50698 * 109.47240 * 179.97438 * 13 11 10 15 15 C 1.38301 * 119.93331 * 269.72270 * 14 13 11 16 16 C 1.38099 * 120.07296 * 180.28116 * 15 14 13 17 17 C 1.38871 * 119.92881 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.06885 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00013 * 185.53235 * 18 17 16 20 20 H 1.08000 * 119.99977 * 4.82989 * 19 18 17 21 21 C 1.38658 * 120.00075 * 184.82938 * 19 18 17 22 22 N 1.31559 * 119.99690 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46954 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47128 * 119.99835 * 23 21 19 26 26 H 1.48502 * 109.46798 * 240.00245 * 23 21 19 27 27 C 1.38879 * 119.86442 * 0.02562 * 17 16 15 28 28 C 1.38094 * 119.93125 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47112 * 183.39240 * 1 2 3 30 30 H 1.08999 * 109.46823 * 303.38845 * 1 2 3 31 31 H 1.09000 * 109.46984 * 63.38840 * 1 2 3 32 32 H 1.08995 * 109.61434 * 319.84632 * 4 2 1 33 33 H 1.09007 * 109.60936 * 80.18952 * 4 2 1 34 34 H 0.96994 * 119.68747 * 179.67794 * 7 5 4 35 35 H 1.08994 * 109.57826 * 191.78239 * 8 7 5 36 36 H 1.08994 * 109.58096 * 312.05156 * 8 7 5 37 37 H 1.09005 * 109.30664 * 158.40310 * 9 8 7 38 38 H 1.08993 * 109.29393 * 38.71277 * 9 8 7 39 39 H 1.09001 * 109.47554 * 59.99343 * 13 11 10 40 40 H 1.09010 * 109.46739 * 299.99435 * 13 11 10 41 41 H 1.08002 * 119.95806 * 0.27677 * 15 14 13 42 42 H 1.07994 * 120.03272 * 179.97438 * 16 15 14 43 43 H 0.97003 * 119.99891 * 180.02562 * 22 21 19 44 44 H 1.08006 * 120.03631 * 179.97438 * 27 17 16 45 45 H 1.08007 * 119.97244 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0409 -0.7220 1.2523 5 6 3.4703 -0.2988 1.5042 6 8 3.7278 0.4237 2.4437 7 7 4.4520 -0.7149 0.6986 8 6 4.1623 -1.5960 -0.4409 9 6 3.4378 -0.7900 -1.5174 10 7 2.0170 -0.6887 -1.1936 11 6 1.1209 -1.2568 -2.0248 12 8 -0.0667 -1.1215 -1.8200 13 6 1.5948 -2.0603 -3.2083 14 6 0.4040 -2.5829 -3.9699 15 6 -0.1341 -3.8156 -3.6483 16 6 -1.2216 -4.2999 -4.3482 17 6 -1.7753 -3.5473 -5.3756 18 8 -2.8448 -4.0203 -6.0651 19 6 -3.2612 -3.2944 -7.1223 20 1 -2.7023 -2.4244 -7.4337 21 6 -4.4070 -3.6651 -7.8096 22 7 -5.0874 -4.7252 -7.4305 23 14 -4.9836 -2.6599 -9.2747 24 1 -4.0503 -1.5261 -9.4952 25 1 -5.0125 -3.5203 -10.4847 26 1 -6.3465 -2.1339 -9.0085 27 6 -1.2328 -2.3097 -5.6962 28 6 -0.1446 -1.8314 -4.9933 29 1 -0.3633 -1.0258 0.0608 30 1 -0.3633 0.5655 0.8581 31 1 -0.3633 0.4603 -0.9188 32 1 1.4229 -0.4513 2.1083 33 1 1.9978 -1.8000 1.0963 34 1 5.3644 -0.4327 0.8678 35 1 5.0950 -1.9897 -0.8445 36 1 3.5292 -2.4205 -0.1133 37 1 3.5556 -1.2872 -2.4803 38 1 3.8697 0.2093 -1.5710 39 1 2.1992 -2.8980 -2.8603 40 1 2.1944 -1.4261 -3.8614 41 1 0.2969 -4.4002 -2.8489 42 1 -1.6410 -5.2628 -4.0968 43 1 -5.8888 -4.9848 -7.9115 44 1 -1.6610 -1.7222 -6.4950 45 1 0.2776 -0.8689 -5.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371040387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:38 Heat of formation + Delta-G solvation = -69.242716 kcal Electronic energy + Delta-G solvation = -28294.462322 eV Core-core repulsion = 24277.743388 eV Total energy + Delta-G solvation = -4016.718934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.99233 -40.80190 -40.29393 -38.33427 -37.49109 -35.63820 -34.59128 -34.19011 -32.33326 -31.71863 -29.46545 -29.08213 -28.05205 -26.94786 -24.35631 -23.80615 -23.58531 -22.17276 -20.95396 -20.09477 -19.80300 -18.80569 -18.40497 -18.08077 -17.48645 -17.15597 -16.67449 -16.35708 -16.23471 -15.84895 -15.49765 -15.41476 -15.09008 -14.95988 -14.74593 -14.34826 -14.19885 -14.03724 -13.97191 -13.72867 -13.54576 -13.38392 -13.25196 -12.94924 -12.73764 -12.66971 -12.46568 -12.39683 -12.24959 -12.17834 -12.09828 -12.01827 -11.16212 -10.96625 -10.78917 -10.37694 -9.82554 -9.71082 -9.53858 -8.84204 -8.46345 -6.13850 0.66761 0.72435 1.34534 1.43051 1.51866 1.53058 1.75588 1.98672 2.18210 2.33928 2.85385 3.19298 3.41953 3.55696 3.73553 3.87545 3.93452 4.03883 4.09786 4.13001 4.21184 4.24069 4.29241 4.39077 4.53429 4.54316 4.64015 4.73405 4.73986 4.81995 4.83841 4.87047 5.06419 5.12329 5.14336 5.17085 5.35484 5.38354 5.61984 5.66668 5.76465 5.83203 5.89241 6.05128 6.20949 6.27437 6.46129 6.98776 7.19380 7.35755 7.81484 8.77551 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.002241 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.836462 B =12492.420469 C =12668.327477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.146 4.146 5 C 0.517 3.483 6 O -0.600 6.600 7 N -0.713 5.713 8 C 0.087 3.913 9 C 0.076 3.924 10 N -0.610 5.610 11 C 0.505 3.495 12 O -0.555 6.555 13 C -0.081 4.081 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.207 4.207 17 C 0.110 3.890 18 O -0.236 6.236 19 C -0.410 4.410 20 H 0.100 0.900 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.019 2.981 24 H -0.252 1.252 25 H -0.266 1.266 26 H -0.270 1.270 27 C -0.245 4.245 28 C -0.060 4.060 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.409 0.591 35 H 0.143 0.857 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.113 0.887 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.545 7.521 11.809 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.056 3.944 3 H 0.090 0.910 4 C -0.187 4.187 5 C 0.304 3.696 6 O -0.482 6.482 7 N -0.364 5.364 8 C -0.037 4.037 9 C -0.046 4.046 10 N -0.345 5.345 11 C 0.295 3.705 12 O -0.433 6.433 13 C -0.120 4.120 14 C -0.142 4.142 15 C -0.072 4.072 16 C -0.227 4.227 17 C 0.060 3.940 18 O -0.143 6.143 19 C -0.486 4.486 20 H 0.117 0.883 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.191 1.191 26 H -0.195 1.195 27 C -0.265 4.265 28 C -0.078 4.078 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.246 0.754 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.154 0.846 38 H 0.102 0.898 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.131 0.869 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 23.570 7.593 12.329 27.663 hybrid contribution -0.744 0.344 -0.517 0.969 sum 22.826 7.937 11.812 26.899 Atomic orbital electron populations 1.22151 0.92744 1.02504 1.00658 1.20817 0.95357 0.95130 0.83091 0.90976 1.22454 0.92474 1.03509 1.00297 1.20759 0.88886 0.78898 0.81017 1.90749 1.85128 1.39675 1.32624 1.45957 1.10506 1.50261 1.29655 1.22423 1.03966 0.92093 0.85207 1.22434 0.78280 1.02951 1.00948 1.47969 1.07772 1.55334 1.23396 1.21338 0.85971 0.79025 0.84148 1.90884 1.18987 1.60205 1.73210 1.20691 0.95915 1.01340 0.94018 1.19260 1.00586 0.95412 0.98935 1.20875 0.93402 0.95725 0.97247 1.20448 1.01294 1.01279 0.99656 1.19971 0.88152 0.93452 0.92424 1.83943 1.41463 1.48664 1.40222 1.21827 1.10421 1.11184 1.05206 0.88305 1.26600 0.95030 0.98184 1.02472 1.70196 1.17698 1.26162 1.42036 0.84524 0.78519 0.77647 0.75473 1.17492 1.19113 1.19528 1.21216 1.02160 0.97315 1.05764 1.20924 0.93734 0.98776 0.94370 0.92301 0.93664 0.92358 0.87908 0.87437 0.75415 0.83896 0.89684 0.84607 0.89839 0.84507 0.85325 0.83310 0.87262 0.91902 0.86938 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 7.43 71.98 0.53 -2.23 16 2 C 0.16 2.62 3.21 45.16 0.14 2.77 16 3 H 0.07 1.22 7.95 -2.39 -0.02 1.20 16 4 C -0.15 -2.14 4.99 30.11 0.15 -1.99 16 5 C 0.52 8.48 7.11 87.99 0.63 9.11 16 6 O -0.60 -15.76 17.91 -3.05 -0.05 -15.81 16 7 N -0.71 -5.46 5.30 -463.51 -2.46 -7.91 16 8 C 0.09 0.09 6.47 86.22 0.56 0.65 16 9 C 0.08 0.26 6.05 86.38 0.52 0.78 16 10 N -0.61 -7.77 2.78 -799.59 -2.22 -9.99 16 11 C 0.51 9.71 7.53 87.66 0.66 10.37 16 12 O -0.56 -16.72 10.97 -3.02 -0.03 -16.75 16 13 C -0.08 -1.17 4.12 29.10 0.12 -1.05 16 14 C -0.14 -3.94 4.38 -19.83 -0.09 -4.03 16 15 C -0.05 -1.74 9.69 22.25 0.22 -1.52 16 16 C -0.21 -8.91 9.99 22.39 0.22 -8.68 16 17 C 0.11 5.60 6.65 22.58 0.15 5.75 16 18 O -0.24 -14.58 9.76 -22.75 -0.22 -14.80 16 19 C -0.41 -24.44 9.45 67.92 0.64 -23.80 16 20 H 0.10 5.44 5.28 -2.91 -0.02 5.42 16 21 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 22 N -0.92 -57.69 13.67 21.61 0.30 -57.40 16 23 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 24 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 C -0.25 -10.89 9.14 22.39 0.20 -10.69 16 28 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 29 H 0.06 1.53 6.74 -2.39 -0.02 1.51 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.61 6.48 -2.39 -0.02 1.60 16 32 H 0.10 1.65 7.98 -2.39 -0.02 1.63 16 33 H 0.11 1.29 7.09 -2.38 -0.02 1.28 16 34 H 0.41 2.27 8.91 -92.71 -0.83 1.45 16 35 H 0.14 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H 0.08 0.18 7.04 -2.39 -0.02 0.16 16 37 H 0.14 -0.27 5.58 -2.38 -0.01 -0.28 16 38 H 0.08 0.30 8.10 -2.39 -0.02 0.28 16 39 H 0.14 0.93 7.92 -2.39 -0.02 0.91 16 40 H 0.13 1.08 7.40 -2.38 -0.02 1.06 16 41 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 42 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.11 5.16 5.70 -2.91 -0.02 5.14 16 45 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -89.25 363.60 2.89 -86.36 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.21 Total: 17.99 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 5.35 Total: -27.39 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -4.38 Total: -75.30 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.31 Total: -47.36 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -89.25 2.89 -86.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371040387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.119 kcal (2) G-P(sol) polarization free energy of solvation -89.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds