Wall clock time and date at job start Tue Mar 31 2020 17:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49755 * 2 1 4 4 C 1.52756 * 109.56766 * 240.02600 * 2 1 3 5 5 N 1.46929 * 109.00936 * 185.55319 * 4 2 1 6 6 C 1.34771 * 120.63011 * 233.57939 * 5 4 2 7 7 O 1.21577 * 120.00123 * 7.08723 * 6 5 4 8 8 N 1.34779 * 120.00157 * 187.07376 * 6 5 4 9 9 C 1.39239 * 120.00048 * 170.85288 * 8 6 5 10 10 C 1.39478 * 119.83180 * 25.24979 * 9 8 6 11 11 C 1.36385 * 120.16463 * 179.71490 * 10 9 8 12 12 C 1.40865 * 119.82714 * 0.56025 * 11 10 9 13 13 C 1.41153 * 120.16474 * 179.69768 * 12 11 10 14 14 H 1.07996 * 120.00286 * 217.25191 * 13 12 11 15 15 C 1.39891 * 119.99865 * 37.24598 * 13 12 11 16 16 N 1.30883 * 120.00255 * 18.19293 * 15 13 12 17 17 Si 1.86799 * 120.00126 * 198.18921 * 15 13 12 18 18 H 1.48500 * 109.47112 * 90.00154 * 17 15 13 19 19 H 1.48500 * 109.47231 * 210.00207 * 17 15 13 20 20 H 1.48498 * 109.47218 * 330.00149 * 17 15 13 21 21 C 1.40867 * 119.67346 * 359.71342 * 12 11 10 22 22 C 1.36375 * 119.82801 * 0.02562 * 21 12 11 23 23 C 1.46922 * 118.73450 * 53.31259 * 5 4 2 24 24 C 1.53199 * 108.77787 * 306.63776 * 23 5 4 25 25 C 1.53040 * 109.30813 * 54.63778 * 24 23 5 26 26 H 1.09006 * 109.45992 * 58.64748 * 25 24 23 27 27 C 1.50702 * 109.46147 * 178.61362 * 25 24 23 28 28 O 1.20818 * 120.00176 * 119.99684 * 27 25 24 29 29 O 1.34232 * 119.99701 * 300.00510 * 27 25 24 30 30 H 1.08999 * 109.46846 * 299.93870 * 1 2 3 31 31 H 1.08997 * 109.46682 * 59.93593 * 1 2 3 32 32 H 1.09000 * 109.46864 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.50884 * 65.66971 * 4 2 1 34 34 H 1.09005 * 109.43145 * 305.38998 * 4 2 1 35 35 H 0.97006 * 119.99428 * 350.58604 * 8 6 5 36 36 H 1.08000 * 119.91651 * 359.97438 * 10 9 8 37 37 H 1.07993 * 120.07998 * 180.27400 * 11 10 9 38 38 H 0.97002 * 120.00563 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.08720 * 179.97438 * 21 12 11 40 40 H 1.08005 * 119.91402 * 179.97438 * 22 21 12 41 41 H 1.09001 * 109.59328 * 66.42707 * 23 5 4 42 42 H 1.09002 * 109.58358 * 186.85234 * 23 5 4 43 43 H 1.08998 * 109.49592 * 174.59001 * 24 23 5 44 44 H 1.08998 * 109.49810 * 294.65788 * 24 23 5 45 45 H 0.96699 * 116.99604 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7191 -1.2468 5 7 3.5047 -0.8295 -1.1692 6 6 4.2813 -0.3864 -2.1776 7 8 3.7847 0.2252 -3.1037 8 7 5.6084 -0.6210 -2.1595 9 6 6.3813 -0.3354 -3.2818 10 6 5.9549 0.6340 -4.1895 11 6 6.7095 0.9233 -5.2881 12 6 7.9164 0.2319 -5.5110 13 6 8.6998 0.5211 -6.6490 14 1 9.2167 -0.2744 -7.1652 15 6 8.8065 1.8381 -7.1084 16 7 8.4964 2.8341 -6.3180 17 14 9.3916 2.1753 -8.8501 18 1 8.2234 2.2133 -9.7661 19 1 10.0958 3.4820 -8.8914 20 1 10.3207 1.0986 -9.2773 21 6 8.3375 -0.7499 -4.5928 22 6 7.5749 -1.0244 -3.4960 23 6 4.1053 -1.4267 0.0314 24 6 3.5708 -0.6946 1.2664 25 6 2.0408 -0.7226 1.2487 26 1 1.6967 -1.7568 1.2358 27 6 1.5116 -0.0329 2.4797 28 8 0.8005 0.9376 2.3698 29 8 1.8306 -0.4967 3.6982 30 1 -0.3633 0.5129 0.8905 31 1 -0.3632 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7647 -0.1503 -2.1345 34 1 1.6022 -1.7154 -1.2969 35 1 6.0256 -0.9852 -1.3630 36 1 5.0269 1.1598 -4.0198 37 1 6.3803 1.6772 -5.9877 38 1 8.5707 3.7474 -6.6363 39 1 9.2614 -1.2844 -4.7573 40 1 7.8962 -1.7772 -2.7913 41 1 3.8375 -2.4818 0.0878 42 1 5.1896 -1.3247 -0.0131 43 1 3.9334 -1.1890 2.1676 44 1 3.9164 0.3391 1.2544 45 1 1.4677 -0.0209 4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389882004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:13 Heat of formation + Delta-G solvation = -88.805655 kcal Electronic energy + Delta-G solvation = -28221.393264 eV Core-core repulsion = 24203.826017 eV Total energy + Delta-G solvation = -4017.567247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.20527 -40.19749 -38.26057 -37.04696 -36.46298 -34.56595 -33.87122 -32.69131 -32.32732 -29.47292 -28.99165 -27.51135 -26.46425 -24.54535 -22.95136 -22.53618 -21.42121 -21.10158 -20.20721 -19.25496 -18.42125 -18.06685 -17.22801 -17.06871 -16.54057 -16.00324 -15.33025 -15.32308 -15.03069 -14.81543 -14.26223 -14.04813 -13.78995 -13.71920 -13.40142 -13.08307 -12.81658 -12.60881 -12.45663 -12.29873 -12.04490 -12.02074 -11.83254 -11.72624 -11.46745 -11.34625 -11.13670 -11.12104 -11.02703 -10.81906 -10.66161 -10.47920 -10.00375 -9.63986 -9.40781 -8.98860 -8.76961 -8.63559 -7.50142 -6.83234 -6.60111 -4.22871 1.82287 2.61827 2.68637 2.84794 3.06892 3.14610 3.18306 3.19136 3.62392 4.04203 4.07220 4.15783 4.28976 4.51389 4.67831 4.73694 4.90620 4.97412 5.08613 5.15487 5.23498 5.28427 5.42791 5.47337 5.64687 5.68371 5.70256 5.84626 5.95350 6.03414 6.13307 6.28128 6.38913 6.43588 6.75869 6.88150 7.09379 7.17102 7.25965 7.35824 7.53055 7.67784 7.77460 7.97170 8.14677 8.33004 8.43242 8.70037 8.92484 8.98121 9.08477 10.35047 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027214 B = 0.002271 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.648349 B =12328.326125 C =12712.463341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.091 4.091 3 H 0.085 0.915 4 C 0.137 3.863 5 N -0.637 5.637 6 C 0.701 3.299 7 O -0.570 6.570 8 N -0.665 5.665 9 C 0.024 3.976 10 C -0.108 4.108 11 C -0.144 4.144 12 C 0.110 3.890 13 C -0.478 4.478 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.802 5.802 17 Si 0.903 3.097 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.264 1.264 21 C -0.201 4.201 22 C -0.117 4.117 23 C 0.114 3.886 24 C -0.128 4.128 25 C -0.073 4.073 26 H 0.111 0.889 27 C 0.483 3.517 28 O -0.506 6.506 29 O -0.517 6.517 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.391 0.609 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.279 0.721 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 -8.187 18.286 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.111 4.111 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.376 5.376 6 C 0.403 3.597 7 O -0.447 6.447 8 N -0.311 5.311 9 C -0.068 4.068 10 C -0.128 4.128 11 C -0.164 4.164 12 C 0.107 3.893 13 C -0.509 4.509 14 H 0.095 0.905 15 C -0.137 4.137 16 N -0.428 5.428 17 Si 0.728 3.272 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.188 1.188 21 C -0.221 4.221 22 C -0.138 4.138 23 C -0.010 4.010 24 C -0.166 4.166 25 C -0.092 4.092 26 H 0.129 0.871 27 C 0.325 3.675 28 O -0.394 6.394 29 O -0.329 6.329 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.227 0.773 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.359 -7.454 17.227 22.474 hybrid contribution 0.357 0.387 0.344 0.629 sum -12.002 -7.067 17.571 22.422 Atomic orbital electron populations 1.22060 0.93613 1.01996 1.04120 1.21377 0.96873 1.00559 0.92267 0.89686 1.21396 0.78307 1.00455 0.98473 1.47360 1.06337 1.65677 1.18237 1.15897 0.81433 0.80068 0.82271 1.90812 1.73314 1.44638 1.35925 1.42256 1.05428 1.67148 1.16290 1.17133 0.95132 1.03187 0.91377 1.21123 1.00487 0.96301 0.94881 1.20857 0.94584 1.02558 0.98421 1.17642 0.90597 0.89762 0.91267 1.19379 1.27673 0.93294 1.10522 0.90494 1.25792 0.93715 0.95924 0.98318 1.69837 1.37392 1.00151 1.35385 0.86406 0.79452 0.78244 0.83089 1.19414 1.20540 1.18799 1.20641 1.00045 1.05437 0.95972 1.19974 0.95501 0.99464 0.98847 1.21574 0.98266 0.97176 0.83950 1.21961 0.92393 1.02913 0.99351 1.21131 0.97324 1.01283 0.89498 0.87071 1.23540 0.77182 0.82115 0.84663 1.90671 1.35286 1.26507 1.86934 1.84541 1.71648 1.59761 1.16958 0.89940 0.91922 0.92933 0.87971 0.91620 0.77349 0.85096 0.87783 0.91073 0.88485 0.89224 0.90855 0.89789 0.89158 0.90599 0.73226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.86 37.16 0.33 -1.08 16 2 C -0.09 -0.87 2.04 -90.72 -0.19 -1.05 16 3 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 4 C 0.14 1.50 5.70 -3.93 -0.02 1.47 16 5 N -0.64 -7.91 2.98 -178.76 -0.53 -8.44 16 6 C 0.70 12.31 8.18 -86.92 -0.71 11.60 16 7 O -0.57 -12.40 12.55 5.30 0.07 -12.34 16 8 N -0.66 -11.61 5.24 -14.10 -0.07 -11.68 16 9 C 0.02 0.54 6.48 -83.57 -0.54 0.00 16 10 C -0.11 -2.72 8.78 -39.79 -0.35 -3.07 16 11 C -0.14 -3.90 8.63 -39.26 -0.34 -4.24 16 12 C 0.11 2.97 5.39 -106.80 -0.58 2.40 16 13 C -0.48 -12.95 8.96 -37.86 -0.34 -13.29 16 14 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 15 C 0.08 2.06 5.05 -17.34 -0.09 1.97 16 16 N -0.80 -21.68 11.90 55.54 0.66 -21.01 16 17 Si 0.90 19.35 29.60 -169.99 -5.03 14.32 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.20 -4.88 9.74 -39.26 -0.38 -5.27 16 22 C -0.12 -2.54 9.87 -39.79 -0.39 -2.94 16 23 C 0.11 0.95 6.39 -3.71 -0.02 0.92 16 24 C -0.13 -0.92 5.30 -26.61 -0.14 -1.06 16 25 C -0.07 -0.55 2.14 -91.73 -0.20 -0.75 16 26 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 27 C 0.48 4.04 7.33 36.01 0.26 4.30 16 28 O -0.51 -5.74 14.34 -18.74 -0.27 -6.01 16 29 O -0.52 -3.06 13.30 -39.26 -0.52 -3.58 16 30 H 0.08 0.83 5.41 -51.93 -0.28 0.55 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 1.36 7.00 -51.93 -0.36 0.99 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.39 5.30 6.30 -40.82 -0.26 5.04 16 36 H 0.13 3.37 5.30 -52.51 -0.28 3.09 16 37 H 0.10 2.92 7.14 -52.49 -0.37 2.54 16 38 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.65 5.67 -51.93 -0.29 0.36 16 43 H 0.09 0.48 8.08 -51.93 -0.42 0.07 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.41 0.88 9.10 45.56 0.41 1.29 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -33.74 363.38 -9.13 -42.86 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.21 Total: 10.48 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -3.70 Total: -10.08 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.05 Total: -41.13 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.72 Total: -21.93 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.74 -9.13 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.942 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds