Wall clock time and date at job start Tue Mar 31 2020 17:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49755 * 2 1 4 4 C 1.52756 * 109.56766 * 240.02600 * 2 1 3 5 5 N 1.46929 * 109.00936 * 185.55319 * 4 2 1 6 6 C 1.34771 * 120.63011 * 233.57939 * 5 4 2 7 7 O 1.21577 * 120.00123 * 7.08723 * 6 5 4 8 8 N 1.34779 * 120.00157 * 187.07376 * 6 5 4 9 9 C 1.39239 * 120.00048 * 170.85288 * 8 6 5 10 10 C 1.39478 * 119.83180 * 25.24979 * 9 8 6 11 11 C 1.36385 * 120.16463 * 179.71490 * 10 9 8 12 12 C 1.40865 * 119.82714 * 0.56025 * 11 10 9 13 13 C 1.41153 * 120.16474 * 179.69768 * 12 11 10 14 14 H 1.07996 * 120.00286 * 217.25191 * 13 12 11 15 15 C 1.39891 * 119.99865 * 37.24598 * 13 12 11 16 16 N 1.30883 * 120.00255 * 18.19293 * 15 13 12 17 17 Si 1.86799 * 120.00126 * 198.18921 * 15 13 12 18 18 H 1.48500 * 109.47112 * 90.00154 * 17 15 13 19 19 H 1.48500 * 109.47231 * 210.00207 * 17 15 13 20 20 H 1.48498 * 109.47218 * 330.00149 * 17 15 13 21 21 C 1.40867 * 119.67346 * 359.71342 * 12 11 10 22 22 C 1.36375 * 119.82801 * 0.02562 * 21 12 11 23 23 C 1.46922 * 118.73450 * 53.31259 * 5 4 2 24 24 C 1.53199 * 108.77787 * 306.63776 * 23 5 4 25 25 C 1.53040 * 109.30813 * 54.63778 * 24 23 5 26 26 H 1.09006 * 109.45992 * 58.64748 * 25 24 23 27 27 C 1.50702 * 109.46147 * 178.61362 * 25 24 23 28 28 O 1.20818 * 120.00176 * 119.99684 * 27 25 24 29 29 O 1.34232 * 119.99701 * 300.00510 * 27 25 24 30 30 H 1.08999 * 109.46846 * 299.93870 * 1 2 3 31 31 H 1.08997 * 109.46682 * 59.93593 * 1 2 3 32 32 H 1.09000 * 109.46864 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.50884 * 65.66971 * 4 2 1 34 34 H 1.09005 * 109.43145 * 305.38998 * 4 2 1 35 35 H 0.97006 * 119.99428 * 350.58604 * 8 6 5 36 36 H 1.08000 * 119.91651 * 359.97438 * 10 9 8 37 37 H 1.07993 * 120.07998 * 180.27400 * 11 10 9 38 38 H 0.97002 * 120.00563 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.08720 * 179.97438 * 21 12 11 40 40 H 1.08005 * 119.91402 * 179.97438 * 22 21 12 41 41 H 1.09001 * 109.59328 * 66.42707 * 23 5 4 42 42 H 1.09002 * 109.58358 * 186.85234 * 23 5 4 43 43 H 1.08998 * 109.49592 * 174.59001 * 24 23 5 44 44 H 1.08998 * 109.49810 * 294.65788 * 24 23 5 45 45 H 0.96699 * 116.99604 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7191 -1.2468 5 7 3.5047 -0.8295 -1.1692 6 6 4.2813 -0.3864 -2.1776 7 8 3.7847 0.2252 -3.1037 8 7 5.6084 -0.6210 -2.1595 9 6 6.3813 -0.3354 -3.2818 10 6 5.9549 0.6340 -4.1895 11 6 6.7095 0.9233 -5.2881 12 6 7.9164 0.2319 -5.5110 13 6 8.6998 0.5211 -6.6490 14 1 9.2167 -0.2744 -7.1652 15 6 8.8065 1.8381 -7.1084 16 7 8.4964 2.8341 -6.3180 17 14 9.3916 2.1753 -8.8501 18 1 8.2234 2.2133 -9.7661 19 1 10.0958 3.4820 -8.8914 20 1 10.3207 1.0986 -9.2773 21 6 8.3375 -0.7499 -4.5928 22 6 7.5749 -1.0244 -3.4960 23 6 4.1053 -1.4267 0.0314 24 6 3.5708 -0.6946 1.2664 25 6 2.0408 -0.7226 1.2487 26 1 1.6967 -1.7568 1.2358 27 6 1.5116 -0.0329 2.4797 28 8 0.8005 0.9376 2.3698 29 8 1.8306 -0.4967 3.6982 30 1 -0.3633 0.5129 0.8905 31 1 -0.3632 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7647 -0.1503 -2.1345 34 1 1.6022 -1.7154 -1.2969 35 1 6.0256 -0.9852 -1.3630 36 1 5.0269 1.1598 -4.0198 37 1 6.3803 1.6772 -5.9877 38 1 8.5707 3.7474 -6.6363 39 1 9.2614 -1.2844 -4.7573 40 1 7.8962 -1.7772 -2.7913 41 1 3.8375 -2.4818 0.0878 42 1 5.1896 -1.3247 -0.0131 43 1 3.9334 -1.1890 2.1676 44 1 3.9164 0.3391 1.2544 45 1 1.4677 -0.0209 4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389882004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:11 Heat of formation + Delta-G solvation = -110.826803 kcal Electronic energy + Delta-G solvation = -28222.348173 eV Core-core repulsion = 24203.826017 eV Total energy + Delta-G solvation = -4018.522155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.06443 -41.32156 -39.57246 -38.43207 -37.12950 -36.20255 -35.14884 -34.24307 -33.10244 -31.39161 -30.79604 -28.22136 -27.69055 -26.16887 -23.81441 -23.33603 -23.16204 -22.67850 -21.20922 -20.47745 -19.36739 -19.16207 -18.97365 -18.00461 -17.73096 -17.07399 -16.78349 -16.49178 -16.35053 -15.79376 -15.66287 -15.19755 -14.89298 -14.66959 -14.53039 -14.43262 -14.22376 -13.95172 -13.73740 -13.53003 -13.33686 -13.15041 -12.99880 -12.92486 -12.83554 -12.76539 -12.42812 -12.35134 -12.01687 -11.86622 -11.75527 -11.52926 -11.51308 -11.21587 -11.17907 -10.83270 -10.49787 -9.70873 -9.43107 -8.71509 -8.48006 -6.24136 0.90164 1.13783 1.20252 1.38770 1.47407 1.52110 1.63306 2.07949 2.19430 2.25462 2.81492 2.98303 3.45047 3.59685 3.71287 3.88996 3.92507 4.23603 4.27807 4.37758 4.43128 4.52878 4.55449 4.57915 4.64651 4.69455 4.80778 4.87214 4.96033 5.07585 5.10886 5.12243 5.18458 5.26882 5.29569 5.32475 5.43326 5.58557 5.63021 5.73642 5.83801 6.05414 6.10504 6.16276 6.40362 6.72212 6.99205 7.02366 7.04004 7.05036 7.61566 8.44475 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027214 B = 0.002271 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.648349 B =12328.326125 C =12712.463341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 H 0.051 0.949 4 C 0.136 3.864 5 N -0.626 5.626 6 C 0.694 3.306 7 O -0.620 6.620 8 N -0.655 5.655 9 C 0.044 3.956 10 C -0.126 4.126 11 C -0.167 4.167 12 C 0.075 3.925 13 C -0.513 4.513 14 H 0.078 0.922 15 C 0.034 3.966 16 N -0.842 5.842 17 Si 0.977 3.023 18 H -0.268 1.268 19 H -0.271 1.271 20 H -0.254 1.254 21 C -0.206 4.206 22 C -0.108 4.108 23 C 0.107 3.893 24 C -0.120 4.120 25 C -0.071 4.071 26 H 0.143 0.857 27 C 0.488 3.512 28 O -0.544 6.544 29 O -0.508 6.508 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.414 0.586 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.283 0.717 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.055 0.945 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 -11.156 20.754 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 H 0.070 0.930 4 C 0.013 3.987 5 N -0.363 5.363 6 C 0.396 3.604 7 O -0.501 6.501 8 N -0.304 5.304 9 C -0.050 4.050 10 C -0.147 4.147 11 C -0.187 4.187 12 C 0.073 3.927 13 C -0.543 4.543 14 H 0.096 0.904 15 C -0.179 4.179 16 N -0.470 5.470 17 Si 0.799 3.201 18 H -0.193 1.193 19 H -0.196 1.196 20 H -0.177 1.177 21 C -0.226 4.226 22 C -0.129 4.129 23 C -0.015 4.015 24 C -0.159 4.159 25 C -0.090 4.090 26 H 0.161 0.839 27 C 0.332 3.668 28 O -0.435 6.435 29 O -0.322 6.322 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.254 0.746 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -12.080 -10.476 19.808 25.456 hybrid contribution 0.118 1.227 -0.164 1.243 sum -11.962 -9.249 19.644 24.790 Atomic orbital electron populations 1.22002 0.93015 1.03193 1.03104 1.21214 0.97285 0.98871 0.93004 0.93028 1.21503 0.77543 1.01788 0.97852 1.47390 1.06545 1.64274 1.18128 1.16143 0.81585 0.79751 0.82886 1.90788 1.74139 1.46718 1.38416 1.42014 1.05352 1.67198 1.15868 1.17175 0.95271 1.01060 0.91511 1.21155 1.00118 0.97726 0.95653 1.20716 0.95715 1.03076 0.99167 1.17953 0.90814 0.91315 0.92629 1.19631 1.28912 0.94072 1.11716 0.90362 1.26670 0.93551 0.95332 1.02325 1.69910 1.38997 1.00656 1.37397 0.85283 0.78978 0.78508 0.77370 1.19317 1.19569 1.17746 1.20929 1.00941 1.04591 0.96175 1.20347 0.94323 0.99582 0.98630 1.21982 0.98670 0.98813 0.82058 1.21928 0.91910 1.01992 1.00020 1.21136 0.97544 1.02355 0.87943 0.83903 1.23610 0.76342 0.81367 0.85501 1.90679 1.37118 1.28173 1.87509 1.84488 1.71247 1.59589 1.16833 0.91065 0.92854 0.90566 0.91217 0.88441 0.74626 0.86342 0.90640 0.90669 0.86931 0.84197 0.87346 0.88952 0.86108 0.92648 0.71215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.86 71.98 0.64 -1.96 16 2 C -0.08 -1.52 2.04 -10.86 -0.02 -1.54 16 3 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 4 C 0.14 2.80 5.70 86.22 0.49 3.29 16 5 N -0.63 -14.29 2.98 -837.74 -2.49 -16.78 16 6 C 0.69 23.95 8.18 179.06 1.47 25.41 16 7 O -0.62 -27.98 12.55 -3.96 -0.05 -28.03 16 8 N -0.66 -21.61 5.24 -316.80 -1.66 -23.27 16 9 C 0.04 1.93 6.48 38.56 0.25 2.18 16 10 C -0.13 -6.62 8.78 22.14 0.19 -6.42 16 11 C -0.17 -9.54 8.63 22.48 0.19 -9.35 16 12 C 0.08 4.21 5.39 -21.28 -0.11 4.10 16 13 C -0.51 -28.74 8.96 23.39 0.21 -28.53 16 14 H 0.08 4.19 7.91 -2.91 -0.02 4.16 16 15 C 0.03 1.83 5.05 85.23 0.43 2.26 16 16 N -0.84 -47.67 11.90 21.82 0.26 -47.41 16 17 Si 0.98 40.75 29.60 68.60 2.03 42.78 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 21 C -0.21 -9.92 9.74 22.48 0.22 -9.70 16 22 C -0.11 -4.45 9.87 22.13 0.22 -4.23 16 23 C 0.11 1.31 6.39 86.37 0.55 1.86 16 24 C -0.12 -1.28 5.30 30.67 0.16 -1.12 16 25 C -0.07 -0.84 2.14 -11.51 -0.02 -0.86 16 26 H 0.14 0.88 8.14 -2.38 -0.02 0.86 16 27 C 0.49 6.99 7.33 71.24 0.52 7.52 16 28 O -0.54 -11.91 14.34 21.99 0.32 -11.60 16 29 O -0.51 -4.27 13.30 -51.44 -0.68 -4.96 16 30 H 0.07 1.41 5.41 -2.39 -0.01 1.40 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.92 7.00 -2.39 -0.02 1.91 16 34 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.41 9.68 6.30 -92.70 -0.58 9.10 16 36 H 0.12 6.49 5.30 -3.25 -0.02 6.47 16 37 H 0.08 4.61 7.14 -2.91 -0.02 4.59 16 38 H 0.28 14.66 8.30 -92.71 -0.77 13.90 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.09 1.00 5.67 -2.39 -0.01 0.99 16 43 H 0.12 0.65 8.08 -2.39 -0.02 0.63 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.43 0.58 9.10 -74.06 -0.67 -0.10 16 Total: -1.00 -79.84 363.38 2.89 -76.95 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.21 Total: 29.44 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 5.39 Total: -17.11 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -3.90 Total: -87.46 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.42 Total: -44.58 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -79.84 2.89 -76.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.880 kcal (2) G-P(sol) polarization free energy of solvation -79.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds