Wall clock time and date at job start Tue Mar 31 2020 17:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49763 * 2 1 4 4 C 1.53196 * 109.49921 * 120.06385 * 2 1 3 5 5 N 1.46937 * 108.76956 * 174.55272 * 4 2 1 6 6 C 1.34778 * 120.60032 * 126.42161 * 5 4 2 7 7 O 1.21578 * 120.00154 * 354.59505 * 6 5 4 8 8 N 1.34777 * 120.00072 * 174.58592 * 6 5 4 9 9 C 1.39238 * 120.00338 * 187.57460 * 8 6 5 10 10 C 1.39485 * 119.82988 * 33.24111 * 9 8 6 11 11 C 1.36377 * 120.16460 * 179.76067 * 10 9 8 12 12 C 1.40866 * 119.83020 * 0.50865 * 11 10 9 13 13 C 1.41145 * 120.16531 * 179.76679 * 12 11 10 14 14 H 1.08004 * 120.00180 * 210.53041 * 13 12 11 15 15 C 1.39899 * 120.00470 * 30.52268 * 13 12 11 16 16 N 1.30882 * 119.99221 * 11.16448 * 15 13 12 17 17 Si 1.86799 * 120.00490 * 191.16594 * 15 13 12 18 18 H 1.48497 * 109.46762 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46933 * 120.00117 * 17 15 13 20 20 H 1.48495 * 109.46889 * 240.00275 * 17 15 13 21 21 C 1.40874 * 119.67302 * 359.74415 * 12 11 10 22 22 C 1.36376 * 119.82521 * 359.97438 * 21 12 11 23 23 C 1.46923 * 118.76943 * 306.44408 * 5 4 2 24 24 C 1.53193 * 108.77073 * 53.58697 * 23 5 4 25 25 C 1.53035 * 109.31865 * 305.36417 * 24 23 5 26 26 H 1.09002 * 109.45265 * 301.35443 * 25 24 23 27 27 C 1.50694 * 109.46416 * 181.38708 * 25 24 23 28 28 O 1.20827 * 120.00122 * 239.93458 * 27 25 24 29 29 O 1.34222 * 120.00146 * 59.93373 * 27 25 24 30 30 H 1.09003 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47025 * 299.99601 * 1 2 3 32 32 H 1.08997 * 109.47231 * 60.00299 * 1 2 3 33 33 H 1.08996 * 109.58694 * 294.37636 * 4 2 1 34 34 H 1.08994 * 109.58472 * 54.80276 * 4 2 1 35 35 H 0.97007 * 119.99535 * 7.58034 * 8 6 5 36 36 H 1.08002 * 119.91473 * 0.02562 * 10 9 8 37 37 H 1.07999 * 120.08402 * 180.25528 * 11 10 9 38 38 H 0.97005 * 119.99452 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.08987 * 179.97438 * 21 12 11 40 40 H 1.08000 * 119.91564 * 180.02562 * 22 21 12 41 41 H 1.09002 * 109.58650 * 293.80682 * 23 5 4 42 42 H 1.08991 * 109.70422 * 173.44292 * 23 5 4 43 43 H 1.09006 * 109.49806 * 185.41467 * 24 23 5 44 44 H 1.08997 * 109.52485 * 65.33953 * 24 23 5 45 45 H 0.96705 * 117.00879 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8294 1.1693 6 6 4.2812 -0.3865 2.1779 7 8 3.7799 0.1944 3.1210 8 7 5.6133 -0.5876 2.1412 9 6 6.3957 -0.2736 3.2493 10 6 5.8726 -0.4251 4.5334 11 6 6.6346 -0.1242 5.6237 12 6 7.9493 0.3509 5.4502 13 6 8.7424 0.6691 6.5735 14 1 9.4897 1.4458 6.5044 15 6 8.5606 -0.0214 7.7766 16 7 7.8192 -1.0995 7.8066 17 14 9.3759 0.5954 9.3400 18 1 10.1544 1.8240 9.0408 19 1 8.3345 0.9041 10.3526 20 1 10.2863 -0.4514 9.8695 21 6 8.4688 0.5063 4.1500 22 6 7.6968 0.1958 3.0695 23 6 4.1054 -1.4266 -0.0312 24 6 3.5708 -0.6946 -1.2662 25 6 2.0408 -0.7227 -1.2486 26 1 1.6969 -1.7570 -1.2357 27 6 1.5117 -0.0331 -2.4796 28 8 0.7994 0.9367 -2.3697 29 8 1.8318 -0.4961 -3.6981 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7638 -0.1574 2.1389 34 1 1.6053 -1.7212 1.2985 35 1 6.0271 -0.9511 1.3426 36 1 4.8631 -0.7858 4.6646 37 1 6.2296 -0.2460 6.6175 38 1 7.6934 -1.5785 8.6406 39 1 9.4757 0.8705 4.0092 40 1 8.0937 0.3141 2.0721 41 1 3.8376 -2.4817 -0.0875 42 1 5.1898 -1.3266 0.0120 43 1 3.9334 -1.1890 -2.1675 44 1 3.9159 0.3392 -1.2546 45 1 1.4689 -0.0204 -4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389882007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:17 Heat of formation + Delta-G solvation = -93.790828 kcal Electronic energy + Delta-G solvation = -28203.720685 eV Core-core repulsion = 24185.937265 eV Total energy + Delta-G solvation = -4017.783420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.18401 -40.13215 -38.20720 -37.05374 -36.45465 -34.55119 -33.85384 -32.69946 -32.28662 -29.48229 -28.96184 -27.49396 -26.45022 -24.57370 -22.93919 -22.52589 -21.36912 -21.08746 -20.18757 -19.15234 -18.42612 -18.10308 -17.25941 -17.06002 -16.53673 -16.00701 -15.42999 -15.16267 -14.96054 -14.82244 -14.23906 -13.93106 -13.87048 -13.72285 -13.46295 -12.91511 -12.83987 -12.61627 -12.47514 -12.29152 -12.04734 -11.97388 -11.78271 -11.70355 -11.36307 -11.33848 -11.13898 -11.08373 -11.04106 -10.80734 -10.64676 -10.48143 -9.89213 -9.67038 -9.45095 -9.16428 -8.90303 -8.60337 -7.49506 -6.87743 -6.64209 -4.26644 1.82550 2.60607 2.69340 2.86751 3.08481 3.11818 3.16383 3.17333 3.67878 3.99413 4.09589 4.17667 4.31983 4.52615 4.68921 4.72404 4.92454 4.98412 5.09851 5.17129 5.25473 5.30055 5.44582 5.48546 5.66596 5.70147 5.73749 5.85604 5.96182 6.04299 6.15777 6.28760 6.37556 6.46846 6.82375 6.84922 7.07698 7.14748 7.29822 7.34228 7.53323 7.65431 7.82119 8.01700 8.10702 8.29930 8.43710 8.67913 8.94344 8.94720 9.10581 10.29312 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.002234 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.464345 B =12531.930797 C =12993.516516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 H 0.084 0.916 4 C 0.137 3.863 5 N -0.637 5.637 6 C 0.699 3.301 7 O -0.572 6.572 8 N -0.667 5.667 9 C 0.021 3.979 10 C -0.090 4.090 11 C -0.144 4.144 12 C 0.104 3.896 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.802 5.802 17 Si 0.910 3.090 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.276 1.276 21 C -0.208 4.208 22 C -0.112 4.112 23 C 0.114 3.886 24 C -0.127 4.127 25 C -0.073 4.073 26 H 0.111 0.889 27 C 0.483 3.517 28 O -0.507 6.507 29 O -0.517 6.517 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.389 0.611 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.278 0.722 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 -3.819 -19.516 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.110 4.110 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.376 5.376 6 C 0.402 3.598 7 O -0.448 6.448 8 N -0.315 5.315 9 C -0.071 4.071 10 C -0.110 4.110 11 C -0.164 4.164 12 C 0.101 3.899 13 C -0.492 4.492 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.429 5.429 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.228 4.228 22 C -0.132 4.132 23 C -0.009 4.009 24 C -0.166 4.166 25 C -0.093 4.093 26 H 0.129 0.871 27 C 0.325 3.675 28 O -0.394 6.394 29 O -0.329 6.329 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.225 0.775 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.176 -3.540 -18.254 21.694 hybrid contribution 0.340 0.245 -0.365 0.555 sum -10.837 -3.295 -18.618 21.793 Atomic orbital electron populations 1.22062 0.93655 1.02009 1.04089 1.21449 0.96834 1.00479 0.92245 0.89716 1.21486 0.78332 1.00412 0.98406 1.47312 1.06302 1.65788 1.18233 1.15884 0.81781 0.79582 0.82595 1.90923 1.73055 1.46086 1.34734 1.42314 1.05035 1.66970 1.17173 1.17009 0.92017 1.12833 0.85264 1.20429 0.98779 1.00621 0.91162 1.20974 0.93702 1.04270 0.97414 1.17666 0.91324 0.89101 0.91806 1.19524 1.17577 1.17634 0.94509 0.90508 1.25883 0.94332 0.93702 1.00486 1.69831 1.31712 1.13058 1.28277 0.86240 0.79520 0.79771 0.81014 1.18537 1.19841 1.20100 1.20586 0.98713 1.10904 0.92638 1.19992 0.93812 1.02092 0.97312 1.21560 0.98299 0.97158 0.83927 1.21957 0.92382 1.02864 0.99367 1.21131 0.97348 1.01298 0.89476 0.87061 1.23546 0.77180 0.82095 0.84660 1.90672 1.35267 1.26565 1.86942 1.84540 1.71606 1.59799 1.16952 0.92926 0.91943 0.89944 0.87985 0.91618 0.77519 0.88036 0.86330 0.91083 0.88573 0.89271 0.90886 0.89744 0.89185 0.90643 0.73238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.86 37.16 0.33 -1.11 16 2 C -0.09 -0.88 2.06 -90.50 -0.19 -1.06 16 3 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 4 C 0.14 1.54 5.73 -3.70 -0.02 1.52 16 5 N -0.64 -8.14 2.97 -178.50 -0.53 -8.67 16 6 C 0.70 12.59 7.98 -86.92 -0.69 11.89 16 7 O -0.57 -12.85 13.51 5.30 0.07 -12.78 16 8 N -0.67 -11.86 5.22 -14.10 -0.07 -11.93 16 9 C 0.02 0.48 6.28 -83.57 -0.52 -0.05 16 10 C -0.09 -2.26 8.57 -39.79 -0.34 -2.60 16 11 C -0.14 -3.89 8.59 -39.26 -0.34 -4.22 16 12 C 0.10 2.80 5.53 -106.80 -0.59 2.21 16 13 C -0.46 -12.41 9.03 -37.86 -0.34 -12.75 16 14 H 0.08 1.98 7.87 -52.48 -0.41 1.57 16 15 C 0.07 1.85 5.23 -17.33 -0.09 1.76 16 16 N -0.80 -21.21 10.98 55.55 0.61 -20.60 16 17 Si 0.91 19.09 29.57 -169.99 -5.03 14.06 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.21 -5.07 9.74 -39.26 -0.38 -5.45 16 22 C -0.11 -2.45 9.89 -39.79 -0.39 -2.84 16 23 C 0.11 0.98 6.39 -3.71 -0.02 0.96 16 24 C -0.13 -0.93 5.30 -26.61 -0.14 -1.07 16 25 C -0.07 -0.56 2.14 -91.73 -0.20 -0.76 16 26 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 27 C 0.48 4.06 7.33 36.00 0.26 4.32 16 28 O -0.51 -5.75 14.33 -18.75 -0.27 -6.02 16 29 O -0.52 -3.07 13.30 -39.24 -0.52 -3.59 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.84 5.41 -51.93 -0.28 0.56 16 33 H 0.10 1.40 7.00 -51.93 -0.36 1.03 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.39 5.39 6.30 -40.82 -0.26 5.13 16 36 H 0.10 2.58 6.46 -52.49 -0.34 2.24 16 37 H 0.12 3.34 6.37 -52.49 -0.33 3.01 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.68 5.65 -51.93 -0.29 0.38 16 43 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.41 0.88 9.10 45.56 0.41 1.29 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -33.63 363.48 -9.16 -42.79 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.22 Total: 10.52 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.67 Total: -9.25 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.01 Total: -41.21 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.72 Total: -22.39 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.63 -9.16 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.999 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds