Wall clock time and date at job start Tue Mar 31 2020 17:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49763 * 2 1 4 4 C 1.53196 * 109.49921 * 120.06385 * 2 1 3 5 5 N 1.46937 * 108.76956 * 174.55272 * 4 2 1 6 6 C 1.34778 * 120.60032 * 126.42161 * 5 4 2 7 7 O 1.21578 * 120.00154 * 354.59505 * 6 5 4 8 8 N 1.34777 * 120.00072 * 174.58592 * 6 5 4 9 9 C 1.39238 * 120.00338 * 187.57460 * 8 6 5 10 10 C 1.39485 * 119.82988 * 33.24111 * 9 8 6 11 11 C 1.36377 * 120.16460 * 179.76067 * 10 9 8 12 12 C 1.40866 * 119.83020 * 0.50865 * 11 10 9 13 13 C 1.41145 * 120.16531 * 179.76679 * 12 11 10 14 14 H 1.08004 * 120.00180 * 210.53041 * 13 12 11 15 15 C 1.39899 * 120.00470 * 30.52268 * 13 12 11 16 16 N 1.30882 * 119.99221 * 11.16448 * 15 13 12 17 17 Si 1.86799 * 120.00490 * 191.16594 * 15 13 12 18 18 H 1.48497 * 109.46762 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46933 * 120.00117 * 17 15 13 20 20 H 1.48495 * 109.46889 * 240.00275 * 17 15 13 21 21 C 1.40874 * 119.67302 * 359.74415 * 12 11 10 22 22 C 1.36376 * 119.82521 * 359.97438 * 21 12 11 23 23 C 1.46923 * 118.76943 * 306.44408 * 5 4 2 24 24 C 1.53193 * 108.77073 * 53.58697 * 23 5 4 25 25 C 1.53035 * 109.31865 * 305.36417 * 24 23 5 26 26 H 1.09002 * 109.45265 * 301.35443 * 25 24 23 27 27 C 1.50694 * 109.46416 * 181.38708 * 25 24 23 28 28 O 1.20827 * 120.00122 * 239.93458 * 27 25 24 29 29 O 1.34222 * 120.00146 * 59.93373 * 27 25 24 30 30 H 1.09003 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47025 * 299.99601 * 1 2 3 32 32 H 1.08997 * 109.47231 * 60.00299 * 1 2 3 33 33 H 1.08996 * 109.58694 * 294.37636 * 4 2 1 34 34 H 1.08994 * 109.58472 * 54.80276 * 4 2 1 35 35 H 0.97007 * 119.99535 * 7.58034 * 8 6 5 36 36 H 1.08002 * 119.91473 * 0.02562 * 10 9 8 37 37 H 1.07999 * 120.08402 * 180.25528 * 11 10 9 38 38 H 0.97005 * 119.99452 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.08987 * 179.97438 * 21 12 11 40 40 H 1.08000 * 119.91564 * 180.02562 * 22 21 12 41 41 H 1.09002 * 109.58650 * 293.80682 * 23 5 4 42 42 H 1.08991 * 109.70422 * 173.44292 * 23 5 4 43 43 H 1.09006 * 109.49806 * 185.41467 * 24 23 5 44 44 H 1.08997 * 109.52485 * 65.33953 * 24 23 5 45 45 H 0.96705 * 117.00879 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8294 1.1693 6 6 4.2812 -0.3865 2.1779 7 8 3.7799 0.1944 3.1210 8 7 5.6133 -0.5876 2.1412 9 6 6.3957 -0.2736 3.2493 10 6 5.8726 -0.4251 4.5334 11 6 6.6346 -0.1242 5.6237 12 6 7.9493 0.3509 5.4502 13 6 8.7424 0.6691 6.5735 14 1 9.4897 1.4458 6.5044 15 6 8.5606 -0.0214 7.7766 16 7 7.8192 -1.0995 7.8066 17 14 9.3759 0.5954 9.3400 18 1 10.1544 1.8240 9.0408 19 1 8.3345 0.9041 10.3526 20 1 10.2863 -0.4514 9.8695 21 6 8.4688 0.5063 4.1500 22 6 7.6968 0.1958 3.0695 23 6 4.1054 -1.4266 -0.0312 24 6 3.5708 -0.6946 -1.2662 25 6 2.0408 -0.7227 -1.2486 26 1 1.6969 -1.7570 -1.2357 27 6 1.5117 -0.0331 -2.4796 28 8 0.7994 0.9367 -2.3697 29 8 1.8318 -0.4961 -3.6981 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7638 -0.1574 2.1389 34 1 1.6053 -1.7212 1.2985 35 1 6.0271 -0.9511 1.3426 36 1 4.8631 -0.7858 4.6646 37 1 6.2296 -0.2460 6.6175 38 1 7.6934 -1.5785 8.6406 39 1 9.4757 0.8705 4.0092 40 1 8.0937 0.3141 2.0721 41 1 3.8376 -2.4817 -0.0875 42 1 5.1898 -1.3266 0.0120 43 1 3.9334 -1.1890 -2.1675 44 1 3.9159 0.3392 -1.2546 45 1 1.4689 -0.0204 -4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389882007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:16 Heat of formation + Delta-G solvation = -115.612363 kcal Electronic energy + Delta-G solvation = -28204.666938 eV Core-core repulsion = 24185.937265 eV Total energy + Delta-G solvation = -4018.729673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.03301 -41.28088 -39.56466 -38.42486 -37.12306 -36.22505 -35.12994 -34.22868 -33.08218 -31.41012 -30.77052 -28.22045 -27.69259 -26.19390 -23.82746 -23.29521 -23.13561 -22.66405 -21.18543 -20.43902 -19.41367 -19.18162 -18.97247 -18.01759 -17.72027 -17.14029 -16.73231 -16.39198 -16.34273 -15.75662 -15.67670 -15.13694 -15.00247 -14.73203 -14.51886 -14.43195 -14.13096 -13.84690 -13.70547 -13.51810 -13.33031 -13.18464 -12.96384 -12.85369 -12.81167 -12.78811 -12.43004 -12.33928 -12.01664 -11.86527 -11.64710 -11.52652 -11.50221 -11.26128 -11.20344 -10.95530 -10.67526 -9.68474 -9.43449 -8.73487 -8.52391 -6.25874 0.87293 1.15555 1.20492 1.39610 1.46764 1.54873 1.66906 2.07775 2.21503 2.25010 2.82036 3.01021 3.45274 3.60083 3.74896 3.88324 3.92696 4.22840 4.28290 4.37937 4.44040 4.47378 4.54585 4.56675 4.64481 4.68891 4.80484 4.87965 4.98361 5.06906 5.08174 5.13035 5.19102 5.26514 5.29137 5.32621 5.44738 5.55922 5.66577 5.73659 5.79953 6.07198 6.13870 6.15064 6.38315 6.71448 6.97278 7.02767 7.02850 7.04279 7.64249 8.41839 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.002234 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.464345 B =12531.930797 C =12993.516516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.135 3.865 5 N -0.627 5.627 6 C 0.693 3.307 7 O -0.625 6.625 8 N -0.658 5.658 9 C 0.038 3.962 10 C -0.104 4.104 11 C -0.168 4.168 12 C 0.070 3.930 13 C -0.497 4.497 14 H 0.078 0.922 15 C 0.028 3.972 16 N -0.838 5.838 17 Si 0.985 3.015 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.265 1.265 21 C -0.214 4.214 22 C -0.105 4.105 23 C 0.106 3.894 24 C -0.119 4.119 25 C -0.072 4.072 26 H 0.141 0.859 27 C 0.489 3.511 28 O -0.544 6.544 29 O -0.508 6.508 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.412 0.588 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.284 0.716 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.058 0.942 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.148 -5.147 -22.381 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.102 4.102 3 H 0.072 0.928 4 C 0.013 3.987 5 N -0.364 5.364 6 C 0.396 3.604 7 O -0.505 6.505 8 N -0.308 5.308 9 C -0.056 4.056 10 C -0.124 4.124 11 C -0.188 4.188 12 C 0.067 3.933 13 C -0.528 4.528 14 H 0.096 0.904 15 C -0.185 4.185 16 N -0.465 5.465 17 Si 0.806 3.194 18 H -0.180 1.180 19 H -0.195 1.195 20 H -0.190 1.190 21 C -0.234 4.234 22 C -0.126 4.126 23 C -0.016 4.016 24 C -0.157 4.157 25 C -0.091 4.091 26 H 0.159 0.841 27 C 0.333 3.667 28 O -0.434 6.434 29 O -0.322 6.322 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.077 0.923 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.635 -4.909 -21.240 24.255 hybrid contribution 0.037 0.619 0.279 0.680 sum -10.598 -4.290 -20.961 23.876 Atomic orbital electron populations 1.22006 0.93072 1.03137 1.03138 1.21279 0.97226 0.98875 0.92836 0.92792 1.21590 0.77575 1.01654 0.97917 1.47359 1.06519 1.64345 1.18187 1.16126 0.81884 0.79337 0.83081 1.90898 1.73953 1.48393 1.37298 1.42072 1.04914 1.67105 1.16737 1.17054 0.92547 1.10464 0.85564 1.20436 0.98200 1.01376 0.92389 1.20843 0.94557 1.06466 0.96940 1.17995 0.91452 0.90374 0.93449 1.19776 1.18532 1.18650 0.95798 0.90370 1.26776 0.94769 0.93437 1.03539 1.69910 1.33035 1.14178 1.29408 0.85119 0.78516 0.79380 0.76418 1.17978 1.19479 1.18966 1.20872 0.99750 1.10515 0.92305 1.20356 0.93102 1.00286 0.98834 1.21964 0.98743 0.98677 0.82180 1.21917 0.91835 1.02092 0.99845 1.21130 0.97631 1.02290 0.88006 0.84107 1.23571 0.76354 0.81337 0.85463 1.90679 1.37050 1.28191 1.87506 1.84486 1.71205 1.59634 1.16825 0.90714 0.92860 0.90940 0.91270 0.88708 0.74805 0.89191 0.88864 0.90525 0.86999 0.84680 0.87744 0.88867 0.86121 0.92341 0.71187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.86 71.98 0.64 -2.01 16 2 C -0.08 -1.51 2.06 -10.71 -0.02 -1.53 16 3 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 4 C 0.14 2.91 5.73 86.36 0.49 3.41 16 5 N -0.63 -14.92 2.97 -836.91 -2.49 -17.41 16 6 C 0.69 24.65 7.98 179.05 1.43 26.08 16 7 O -0.63 -29.09 13.51 -3.96 -0.05 -29.14 16 8 N -0.66 -22.30 5.22 -316.79 -1.65 -23.96 16 9 C 0.04 1.67 6.28 38.56 0.24 1.92 16 10 C -0.10 -5.41 8.57 22.14 0.19 -5.22 16 11 C -0.17 -9.58 8.59 22.48 0.19 -9.39 16 12 C 0.07 3.90 5.53 -21.28 -0.12 3.78 16 13 C -0.50 -27.59 9.03 23.39 0.21 -27.38 16 14 H 0.08 4.14 7.87 -2.91 -0.02 4.11 16 15 C 0.03 1.45 5.23 85.24 0.45 1.89 16 16 N -0.84 -46.14 10.98 21.82 0.24 -45.90 16 17 Si 0.98 39.91 29.57 68.60 2.03 41.93 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 C -0.21 -10.38 9.74 22.48 0.22 -10.16 16 22 C -0.11 -4.44 9.89 22.13 0.22 -4.22 16 23 C 0.11 1.40 6.39 86.36 0.55 1.95 16 24 C -0.12 -1.27 5.30 30.67 0.16 -1.11 16 25 C -0.07 -0.87 2.14 -11.52 -0.02 -0.89 16 26 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 27 C 0.49 6.97 7.33 71.23 0.52 7.49 16 28 O -0.54 -11.76 14.33 21.96 0.31 -11.45 16 29 O -0.51 -4.23 13.30 -51.34 -0.68 -4.91 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.44 5.41 -2.39 -0.01 1.42 16 33 H 0.07 1.98 7.00 -2.39 -0.02 1.96 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.41 10.03 6.30 -92.70 -0.58 9.45 16 36 H 0.09 4.82 6.46 -2.91 -0.02 4.81 16 37 H 0.09 5.66 6.37 -2.91 -0.02 5.64 16 38 H 0.28 14.21 8.30 -92.70 -0.77 13.44 16 39 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 40 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 1.08 5.65 -2.39 -0.01 1.07 16 43 H 0.12 0.66 8.08 -2.38 -0.02 0.64 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.43 0.49 9.10 -74.05 -0.67 -0.18 16 Total: -1.00 -78.88 363.48 2.85 -76.03 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.21 Total: 30.20 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.35 Total: -15.40 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -3.90 Total: -87.27 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.42 Total: -45.50 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Total: -78.88 2.85 -76.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.580 kcal (2) G-P(sol) polarization free energy of solvation -78.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds