Wall clock time and date at job start Tue Mar 31 2020 17:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52044 * 2 1 4 4 C 1.53193 * 109.49588 * 239.91945 * 2 1 3 5 5 N 1.46930 * 108.77630 * 294.68124 * 4 2 1 6 6 C 1.34775 * 120.62577 * 126.37218 * 5 4 2 7 7 O 1.21577 * 120.00529 * 354.88650 * 6 5 4 8 8 N 1.34777 * 119.99531 * 174.89540 * 6 5 4 9 9 C 1.39245 * 120.00248 * 185.22117 * 8 6 5 10 10 C 1.39478 * 119.83754 * 213.37473 * 9 8 6 11 11 C 1.36365 * 120.17021 * 179.75643 * 10 9 8 12 12 C 1.40875 * 119.82785 * 0.53459 * 11 10 9 13 13 C 1.41153 * 120.16438 * 179.74038 * 12 11 10 14 14 H 1.07994 * 120.00069 * 209.40813 * 13 12 11 15 15 C 1.39903 * 119.99914 * 29.40609 * 13 12 11 16 16 N 1.30878 * 120.00171 * 10.03703 * 15 13 12 17 17 Si 1.86799 * 119.99663 * 190.03656 * 15 13 12 18 18 H 1.48496 * 109.47291 * 90.00287 * 17 15 13 19 19 H 1.48505 * 109.47007 * 210.00162 * 17 15 13 20 20 H 1.48504 * 109.47240 * 329.99911 * 17 15 13 21 21 C 1.40868 * 119.67196 * 359.72080 * 12 11 10 22 22 C 1.36373 * 119.82739 * 359.97438 * 21 12 11 23 23 C 1.46928 * 118.73895 * 306.39483 * 5 4 2 24 24 C 1.53192 * 108.77775 * 53.60467 * 23 5 4 25 25 C 1.53040 * 109.31379 * 305.36955 * 24 23 5 26 26 H 1.09002 * 109.45657 * 301.34023 * 25 24 23 27 27 C 1.50704 * 109.46175 * 181.38579 * 25 24 23 28 28 O 1.20821 * 119.99747 * 239.99984 * 27 25 24 29 29 O 1.34225 * 119.99973 * 59.99218 * 27 25 24 30 30 H 1.09001 * 109.46977 * 299.91513 * 1 2 3 31 31 H 1.09001 * 109.47441 * 59.91881 * 1 2 3 32 32 H 1.09004 * 109.47197 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.58559 * 54.47144 * 4 2 1 34 34 H 1.08997 * 109.58582 * 174.89397 * 4 2 1 35 35 H 0.97001 * 120.00136 * 5.21499 * 8 6 5 36 36 H 1.08003 * 119.91153 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.08779 * 180.22790 * 11 10 9 38 38 H 0.96994 * 120.00104 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.08394 * 179.97438 * 21 12 11 40 40 H 1.07999 * 119.91654 * 179.97438 * 22 21 12 41 41 H 1.09002 * 109.58251 * 293.81819 * 23 5 4 42 42 H 1.08995 * 109.58381 * 173.39647 * 23 5 4 43 43 H 1.09005 * 109.49468 * 65.31760 * 24 23 5 44 44 H 1.08995 * 109.49846 * 185.41517 * 24 23 5 45 45 H 0.96702 * 117.00244 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 1.6515 -2.1382 -1.1696 6 6 0.9740 -2.7218 -2.1780 7 8 0.5984 -2.0561 -3.1235 8 7 0.7126 -4.0434 -2.1381 9 6 0.1096 -4.6671 -3.2272 10 6 -0.7642 -5.7342 -3.0195 11 6 -1.3623 -6.3468 -4.0809 12 6 -1.0871 -5.9064 -5.3905 13 6 -1.6980 -6.5388 -6.4946 14 1 -1.1916 -6.5690 -7.4479 15 6 -2.9597 -7.1267 -6.3539 16 7 -3.6584 -6.9242 -5.2659 17 14 -3.6471 -8.2007 -7.7190 18 1 -3.2394 -9.6105 -7.4925 19 1 -5.1293 -8.1085 -7.7226 20 1 -3.1191 -7.7368 -9.0272 21 6 -0.1993 -4.8314 -5.5926 22 6 0.3864 -4.2248 -4.5208 23 6 2.0140 -2.9041 0.0308 24 6 1.5030 -2.1558 1.2660 25 6 2.0408 -0.7231 1.2483 26 1 3.1305 -0.7444 1.2353 27 6 1.5679 0.0059 2.4797 28 8 0.8909 1.0006 2.3701 29 8 1.8988 -0.4499 3.6980 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6006 -0.2731 -2.1389 34 1 3.1274 -0.6463 -1.2981 35 1 0.9447 -4.5601 -1.3507 36 1 -0.9702 -6.0740 -2.0153 37 1 -2.0415 -7.1706 -3.9184 38 1 -4.5333 -7.3315 -5.1686 39 1 0.0168 -4.4887 -6.5936 40 1 1.0675 -3.4008 -4.6741 41 1 3.0979 -3.0043 0.0867 42 1 1.5554 -3.8918 -0.0138 43 1 0.4132 -2.1355 1.2541 44 1 1.8481 -2.6628 2.1671 45 1 1.5720 0.0510 4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389882008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:22 Heat of formation + Delta-G solvation = -90.961503 kcal Electronic energy + Delta-G solvation = -28451.732751 eV Core-core repulsion = 24434.072019 eV Total energy + Delta-G solvation = -4017.660731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.24435 -40.12969 -38.27729 -37.04716 -36.42655 -34.52432 -33.70836 -32.67616 -31.95521 -29.54535 -28.85071 -27.66762 -26.45032 -24.61306 -23.34021 -22.55994 -21.51644 -20.90864 -19.83660 -18.78293 -18.40458 -18.21618 -17.26721 -16.83432 -16.48228 -16.00300 -15.63591 -15.24000 -14.94791 -14.74112 -14.26567 -13.90549 -13.82157 -13.72680 -13.51732 -13.13179 -12.82296 -12.63658 -12.22783 -12.19923 -12.04038 -11.82326 -11.79416 -11.70169 -11.30559 -11.25499 -11.11743 -10.98202 -10.87908 -10.80105 -10.70720 -10.49584 -9.99363 -9.50382 -9.47908 -9.20516 -8.90114 -8.58434 -7.50820 -6.86201 -6.64736 -4.27163 1.85054 2.62038 2.70206 2.87542 3.09900 3.12061 3.14526 3.17022 3.69371 3.98200 4.12838 4.16995 4.36839 4.54549 4.71186 4.73719 4.92990 4.97214 5.05652 5.19972 5.33875 5.37931 5.47691 5.59349 5.69054 5.72804 5.80567 5.94826 5.98858 6.15744 6.20916 6.36580 6.43590 6.50555 6.80310 6.85719 7.07489 7.15283 7.28998 7.37585 7.55147 7.65802 7.88002 7.97721 8.09246 8.33040 8.44796 8.65407 8.94126 8.94897 9.11564 10.28097 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.002289 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.397263 B =12227.781971 C =12422.966112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.136 3.864 5 N -0.634 5.634 6 C 0.699 3.301 7 O -0.573 6.573 8 N -0.667 5.667 9 C 0.019 3.981 10 C -0.120 4.120 11 C -0.144 4.144 12 C 0.102 3.898 13 C -0.460 4.460 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.804 5.804 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.263 1.263 21 C -0.209 4.209 22 C -0.080 4.080 23 C 0.115 3.885 24 C -0.130 4.130 25 C -0.073 4.073 26 H 0.111 0.889 27 C 0.482 3.518 28 O -0.507 6.507 29 O -0.517 6.517 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.389 0.611 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.279 0.721 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 8.023 17.001 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 H 0.107 0.893 4 C 0.012 3.988 5 N -0.374 5.374 6 C 0.402 3.598 7 O -0.449 6.449 8 N -0.314 5.314 9 C -0.074 4.074 10 C -0.140 4.140 11 C -0.164 4.164 12 C 0.099 3.901 13 C -0.490 4.490 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.430 5.430 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.229 4.229 22 C -0.101 4.101 23 C -0.009 4.009 24 C -0.168 4.168 25 C -0.092 4.092 26 H 0.129 0.871 27 C 0.324 3.676 28 O -0.395 6.395 29 O -0.329 6.329 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 10.998 8.509 16.006 21.203 hybrid contribution -0.584 -0.316 0.569 0.875 sum 10.414 8.193 16.576 21.221 Atomic orbital electron populations 1.22013 0.93739 1.02367 1.03086 1.21430 0.97985 0.99294 0.92244 0.89282 1.21467 0.98882 0.79910 0.98499 1.47257 1.60624 1.11350 1.18126 1.15882 0.79060 0.82247 0.82658 1.90916 1.56691 1.62734 1.34563 1.42329 1.63606 1.06442 1.19065 1.17008 1.04067 1.00908 0.85410 1.20202 0.97739 0.98263 0.97823 1.20933 1.01880 1.01789 0.91840 1.17671 0.89947 0.89345 0.93099 1.19524 1.01196 1.30853 0.97430 0.90541 1.25888 0.96868 0.95079 0.96627 1.69810 1.11058 1.35715 1.26460 0.86262 0.78092 0.80444 0.81573 1.19438 1.20391 1.18719 1.20709 1.05900 0.99624 0.96671 1.20270 0.99732 0.98937 0.91128 1.21560 1.00367 0.94968 0.84009 1.22003 1.02533 0.93030 0.99278 1.21090 1.02631 0.95996 0.89489 0.87136 1.23549 0.76606 0.82736 0.84669 1.90694 1.35797 1.25925 1.87034 1.84539 1.72986 1.58447 1.16963 0.91019 0.92184 0.92555 0.87976 0.91697 0.77494 0.89293 0.85899 0.91064 0.88703 0.87930 0.90935 0.89791 0.90223 0.89332 0.73258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.40 37.16 0.31 -1.55 16 2 C -0.09 -0.86 2.36 -90.50 -0.21 -1.08 16 3 H 0.09 0.80 8.07 -51.93 -0.42 0.39 16 4 C 0.14 1.48 5.84 -3.71 -0.02 1.46 16 5 N -0.63 -7.88 2.41 -178.50 -0.43 -8.31 16 6 C 0.70 12.36 8.02 -86.92 -0.70 11.67 16 7 O -0.57 -12.67 13.43 5.30 0.07 -12.60 16 8 N -0.67 -11.78 5.22 -14.10 -0.07 -11.85 16 9 C 0.02 0.42 6.29 -83.57 -0.53 -0.11 16 10 C -0.12 -2.74 9.89 -39.79 -0.39 -3.13 16 11 C -0.14 -3.72 8.60 -39.26 -0.34 -4.06 16 12 C 0.10 2.75 5.55 -106.80 -0.59 2.16 16 13 C -0.46 -12.33 9.04 -37.85 -0.34 -12.67 16 14 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 15 C 0.07 1.81 5.26 -17.34 -0.09 1.72 16 16 N -0.80 -21.05 10.84 55.55 0.60 -20.45 16 17 Si 0.91 18.95 29.57 -169.99 -5.03 13.92 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 C -0.21 -5.35 9.74 -39.26 -0.38 -5.74 16 22 C -0.08 -1.95 8.57 -39.79 -0.34 -2.29 16 23 C 0.11 0.97 6.39 -3.71 -0.02 0.94 16 24 C -0.13 -0.96 4.96 -26.61 -0.13 -1.09 16 25 C -0.07 -0.55 2.37 -91.73 -0.22 -0.77 16 26 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 27 C 0.48 4.12 7.34 36.01 0.26 4.38 16 28 O -0.51 -5.88 14.51 -18.75 -0.27 -6.15 16 29 O -0.52 -3.16 13.30 -39.24 -0.52 -3.68 16 30 H 0.07 0.89 5.64 -51.93 -0.29 0.60 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.10 1.36 6.99 -51.93 -0.36 1.00 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.39 5.39 6.30 -40.82 -0.26 5.14 16 36 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.12 3.25 6.23 -52.49 -0.33 2.92 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.10 2.46 6.41 -52.49 -0.34 2.13 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.67 5.64 -51.93 -0.29 0.38 16 43 H 0.08 0.72 6.33 -51.93 -0.33 0.39 16 44 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 45 H 0.41 0.96 9.10 45.56 0.41 1.38 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -33.56 358.83 -9.00 -42.55 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.02 Total: 11.31 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.73 Total: -10.15 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.10 Total: -40.60 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.72 Total: -22.43 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.56 -9.00 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.411 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds