Wall clock time and date at job start Tue Mar 31 2020 17:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52044 * 2 1 4 4 C 1.53193 * 109.49588 * 239.91945 * 2 1 3 5 5 N 1.46930 * 108.77630 * 294.68124 * 4 2 1 6 6 C 1.34775 * 120.62577 * 126.37218 * 5 4 2 7 7 O 1.21577 * 120.00529 * 354.88650 * 6 5 4 8 8 N 1.34777 * 119.99531 * 174.89540 * 6 5 4 9 9 C 1.39245 * 120.00248 * 185.22117 * 8 6 5 10 10 C 1.39478 * 119.83754 * 213.37473 * 9 8 6 11 11 C 1.36365 * 120.17021 * 179.75643 * 10 9 8 12 12 C 1.40875 * 119.82785 * 0.53459 * 11 10 9 13 13 C 1.41153 * 120.16438 * 179.74038 * 12 11 10 14 14 H 1.07994 * 120.00069 * 209.40813 * 13 12 11 15 15 C 1.39903 * 119.99914 * 29.40609 * 13 12 11 16 16 N 1.30878 * 120.00171 * 10.03703 * 15 13 12 17 17 Si 1.86799 * 119.99663 * 190.03656 * 15 13 12 18 18 H 1.48496 * 109.47291 * 90.00287 * 17 15 13 19 19 H 1.48505 * 109.47007 * 210.00162 * 17 15 13 20 20 H 1.48504 * 109.47240 * 329.99911 * 17 15 13 21 21 C 1.40868 * 119.67196 * 359.72080 * 12 11 10 22 22 C 1.36373 * 119.82739 * 359.97438 * 21 12 11 23 23 C 1.46928 * 118.73895 * 306.39483 * 5 4 2 24 24 C 1.53192 * 108.77775 * 53.60467 * 23 5 4 25 25 C 1.53040 * 109.31379 * 305.36955 * 24 23 5 26 26 H 1.09002 * 109.45657 * 301.34023 * 25 24 23 27 27 C 1.50704 * 109.46175 * 181.38579 * 25 24 23 28 28 O 1.20821 * 119.99747 * 239.99984 * 27 25 24 29 29 O 1.34225 * 119.99973 * 59.99218 * 27 25 24 30 30 H 1.09001 * 109.46977 * 299.91513 * 1 2 3 31 31 H 1.09001 * 109.47441 * 59.91881 * 1 2 3 32 32 H 1.09004 * 109.47197 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.58559 * 54.47144 * 4 2 1 34 34 H 1.08997 * 109.58582 * 174.89397 * 4 2 1 35 35 H 0.97001 * 120.00136 * 5.21499 * 8 6 5 36 36 H 1.08003 * 119.91153 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.08779 * 180.22790 * 11 10 9 38 38 H 0.96994 * 120.00104 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.08394 * 179.97438 * 21 12 11 40 40 H 1.07999 * 119.91654 * 179.97438 * 22 21 12 41 41 H 1.09002 * 109.58251 * 293.81819 * 23 5 4 42 42 H 1.08995 * 109.58381 * 173.39647 * 23 5 4 43 43 H 1.09005 * 109.49468 * 65.31760 * 24 23 5 44 44 H 1.08995 * 109.49846 * 185.41517 * 24 23 5 45 45 H 0.96702 * 117.00244 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 1.6515 -2.1382 -1.1696 6 6 0.9740 -2.7218 -2.1780 7 8 0.5984 -2.0561 -3.1235 8 7 0.7126 -4.0434 -2.1381 9 6 0.1096 -4.6671 -3.2272 10 6 -0.7642 -5.7342 -3.0195 11 6 -1.3623 -6.3468 -4.0809 12 6 -1.0871 -5.9064 -5.3905 13 6 -1.6980 -6.5388 -6.4946 14 1 -1.1916 -6.5690 -7.4479 15 6 -2.9597 -7.1267 -6.3539 16 7 -3.6584 -6.9242 -5.2659 17 14 -3.6471 -8.2007 -7.7190 18 1 -3.2394 -9.6105 -7.4925 19 1 -5.1293 -8.1085 -7.7226 20 1 -3.1191 -7.7368 -9.0272 21 6 -0.1993 -4.8314 -5.5926 22 6 0.3864 -4.2248 -4.5208 23 6 2.0140 -2.9041 0.0308 24 6 1.5030 -2.1558 1.2660 25 6 2.0408 -0.7231 1.2483 26 1 3.1305 -0.7444 1.2353 27 6 1.5679 0.0059 2.4797 28 8 0.8909 1.0006 2.3701 29 8 1.8988 -0.4499 3.6980 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6006 -0.2731 -2.1389 34 1 3.1274 -0.6463 -1.2981 35 1 0.9447 -4.5601 -1.3507 36 1 -0.9702 -6.0740 -2.0153 37 1 -2.0415 -7.1706 -3.9184 38 1 -4.5333 -7.3315 -5.1686 39 1 0.0168 -4.4887 -6.5936 40 1 1.0675 -3.4008 -4.6741 41 1 3.0979 -3.0043 0.0867 42 1 1.5554 -3.8918 -0.0138 43 1 0.4132 -2.1355 1.2541 44 1 1.8481 -2.6628 2.1671 45 1 1.5720 0.0510 4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389882008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:21 Heat of formation + Delta-G solvation = -112.225341 kcal Electronic energy + Delta-G solvation = -28452.654820 eV Core-core repulsion = 24434.072019 eV Total energy + Delta-G solvation = -4018.582801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10210 -41.24664 -39.61194 -38.47285 -37.08842 -36.20017 -35.07123 -34.12232 -32.77500 -31.44937 -30.68495 -28.48964 -27.67738 -26.25662 -24.08705 -23.63447 -23.02365 -22.56669 -21.18299 -19.84586 -19.36391 -19.17587 -18.98149 -18.00161 -17.53536 -17.03302 -16.76659 -16.70988 -16.16144 -15.79318 -15.58179 -15.39237 -14.87132 -14.82157 -14.50991 -14.46468 -14.13193 -13.90704 -13.87267 -13.62867 -13.25708 -13.01994 -12.87609 -12.78207 -12.77524 -12.68928 -12.49272 -12.39981 -12.05601 -11.77824 -11.59595 -11.56115 -11.37866 -11.30084 -11.20608 -10.94956 -10.66371 -9.64285 -9.43995 -8.72155 -8.52613 -6.26378 0.87254 1.16401 1.22572 1.40429 1.48921 1.53836 1.69935 2.10317 2.23709 2.26753 2.81661 3.03325 3.46814 3.62447 3.74427 3.93719 3.94218 4.16160 4.33584 4.35408 4.40517 4.52242 4.56291 4.58992 4.70033 4.70429 4.83659 4.87801 4.93906 5.07513 5.08845 5.12820 5.14787 5.18155 5.31663 5.34992 5.46731 5.59750 5.67757 5.71225 5.81039 6.06491 6.11835 6.19240 6.41483 6.69336 6.97354 7.03205 7.03591 7.05756 7.67407 8.40988 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.002289 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.397263 B =12227.781971 C =12422.966112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.097 0.903 4 C 0.134 3.866 5 N -0.623 5.623 6 C 0.695 3.305 7 O -0.624 6.624 8 N -0.659 5.659 9 C 0.038 3.962 10 C -0.118 4.118 11 C -0.161 4.161 12 C 0.070 3.930 13 C -0.497 4.497 14 H 0.073 0.927 15 C 0.030 3.970 16 N -0.836 5.836 17 Si 0.986 3.014 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.262 1.262 21 C -0.226 4.226 22 C -0.091 4.091 23 C 0.107 3.893 24 C -0.123 4.123 25 C -0.070 4.070 26 H 0.145 0.855 27 C 0.488 3.512 28 O -0.545 6.545 29 O -0.509 6.509 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.411 0.589 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.286 0.714 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.118 0.882 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.265 7.424 19.475 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.116 0.884 4 C 0.011 3.989 5 N -0.360 5.360 6 C 0.397 3.603 7 O -0.504 6.504 8 N -0.309 5.309 9 C -0.056 4.056 10 C -0.138 4.138 11 C -0.181 4.181 12 C 0.067 3.933 13 C -0.527 4.527 14 H 0.091 0.909 15 C -0.183 4.183 16 N -0.463 5.463 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.195 1.195 20 H -0.186 1.186 21 C -0.246 4.246 22 C -0.112 4.112 23 C -0.015 4.015 24 C -0.161 4.161 25 C -0.089 4.089 26 H 0.163 0.837 27 C 0.332 3.668 28 O -0.436 6.436 29 O -0.322 6.322 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.251 0.749 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.136 0.864 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 12.776 7.913 18.591 23.906 hybrid contribution -1.018 0.015 0.011 1.018 sum 11.758 7.928 18.603 23.392 Atomic orbital electron populations 1.21944 0.96051 1.00956 1.01767 1.21328 0.95862 1.00051 0.92979 0.88447 1.21601 1.00607 0.78813 0.97855 1.47285 1.58671 1.12084 1.17959 1.16086 0.79094 0.81895 0.83196 1.90891 1.58709 1.63770 1.37070 1.42103 1.63358 1.06857 1.18621 1.17031 1.02577 0.99890 0.86120 1.20454 0.96792 0.97854 0.98729 1.20937 1.02620 1.02219 0.92334 1.17988 0.90965 0.90242 0.94076 1.19745 1.02515 1.32975 0.97490 0.90923 1.26736 0.96521 0.95794 0.99231 1.69864 1.11646 1.36499 1.28270 0.85141 0.77483 0.78585 0.78071 1.18316 1.19464 1.18617 1.20832 1.06518 0.99975 0.97275 1.20363 0.99998 0.98913 0.91898 1.21950 1.02611 0.94660 0.82234 1.21962 1.01300 0.92980 0.99867 1.21098 1.04473 0.95413 0.87891 0.83740 1.23632 0.75671 0.82022 0.85502 1.90697 1.37563 1.27709 1.87601 1.84488 1.72518 1.58357 1.16876 0.91464 0.94319 0.93958 0.91142 0.88241 0.74942 0.85849 0.87017 0.90330 0.88863 0.88052 0.87428 0.89247 0.92282 0.86404 0.71256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.40 71.98 0.60 -3.03 16 2 C -0.08 -1.44 2.36 -10.72 -0.03 -1.46 16 3 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 4 C 0.13 2.68 5.84 86.36 0.50 3.18 16 5 N -0.62 -14.10 2.41 -836.92 -2.02 -16.12 16 6 C 0.69 24.01 8.02 179.05 1.44 25.45 16 7 O -0.62 -28.17 13.43 -3.96 -0.05 -28.22 16 8 N -0.66 -22.27 5.22 -316.79 -1.65 -23.93 16 9 C 0.04 1.68 6.29 38.56 0.24 1.93 16 10 C -0.12 -5.33 9.89 22.13 0.22 -5.11 16 11 C -0.16 -8.49 8.60 22.48 0.19 -8.29 16 12 C 0.07 3.92 5.55 -21.27 -0.12 3.80 16 13 C -0.50 -27.70 9.04 23.39 0.21 -27.49 16 14 H 0.07 3.92 7.86 -2.91 -0.02 3.90 16 15 C 0.03 1.56 5.26 85.24 0.45 2.00 16 16 N -0.84 -44.67 10.84 21.82 0.24 -44.43 16 17 Si 0.99 39.28 29.57 68.60 2.03 41.31 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.23 -12.08 9.74 22.48 0.22 -11.86 16 22 C -0.09 -4.53 8.57 22.14 0.19 -4.34 16 23 C 0.11 1.36 6.39 86.36 0.55 1.91 16 24 C -0.12 -1.34 4.96 30.67 0.15 -1.19 16 25 C -0.07 -0.80 2.37 -11.51 -0.03 -0.83 16 26 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 27 C 0.49 6.92 7.34 71.24 0.52 7.44 16 28 O -0.55 -11.84 14.51 21.98 0.32 -11.52 16 29 O -0.51 -4.34 13.30 -51.37 -0.68 -5.03 16 30 H 0.07 1.69 5.64 -2.39 -0.01 1.68 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 1.12 5.97 -2.39 -0.01 1.10 16 33 H 0.07 1.91 6.99 -2.39 -0.02 1.89 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.41 10.19 6.30 -92.71 -0.58 9.60 16 36 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.11 6.07 6.23 -2.91 -0.02 6.05 16 38 H 0.29 13.83 8.30 -92.71 -0.77 13.07 16 39 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.10 5.01 6.41 -2.91 -0.02 4.99 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 1.06 5.64 -2.39 -0.01 1.05 16 43 H 0.06 0.93 6.33 -2.38 -0.02 0.91 16 44 H 0.12 0.70 8.08 -2.39 -0.02 0.68 16 45 H 0.43 0.65 9.10 -74.06 -0.67 -0.02 16 Total: -1.00 -77.57 358.83 3.30 -74.27 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.20 Total: 31.55 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 5.32 Total: -17.88 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -3.43 Total: -84.48 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.42 Total: -44.77 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -77.57 3.30 -74.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.954 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds