Wall clock time and date at job start Tue Mar 31 2020 17:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50057 * 2 1 4 4 C 1.53188 * 109.49561 * 120.06655 * 2 1 3 5 5 N 1.46928 * 108.77810 * 65.34853 * 4 2 1 6 6 C 1.34775 * 120.63088 * 233.58680 * 5 4 2 7 7 O 1.21581 * 120.00145 * 354.94255 * 6 5 4 8 8 N 1.34775 * 120.00134 * 174.94561 * 6 5 4 9 9 C 1.39240 * 120.00154 * 186.97825 * 8 6 5 10 10 C 1.39474 * 119.83442 * 33.31390 * 9 8 6 11 11 C 1.36382 * 120.16927 * 179.75977 * 10 9 8 12 12 C 1.40864 * 119.82434 * 0.51855 * 11 10 9 13 13 C 1.41162 * 120.16061 * 179.71655 * 12 11 10 14 14 H 1.08004 * 119.99910 * 151.26653 * 13 12 11 15 15 C 1.39892 * 120.00181 * 331.27635 * 13 12 11 16 16 N 1.30889 * 119.99899 * 340.34920 * 15 13 12 17 17 Si 1.86800 * 120.00339 * 160.35449 * 15 13 12 18 18 H 1.48506 * 109.46958 * 94.97224 * 17 15 13 19 19 H 1.48493 * 109.47244 * 214.97440 * 17 15 13 20 20 H 1.48496 * 109.46949 * 334.97461 * 17 15 13 21 21 C 1.40865 * 119.67604 * 359.73785 * 12 11 10 22 22 C 1.36374 * 119.82816 * 0.02562 * 21 12 11 23 23 C 1.46920 * 118.73777 * 53.60723 * 5 4 2 24 24 C 1.53198 * 108.77753 * 306.39250 * 23 5 4 25 25 C 1.53038 * 109.30988 * 54.63564 * 24 23 5 26 26 H 1.09000 * 109.46106 * 58.65813 * 25 24 23 27 27 C 1.50707 * 109.45890 * 178.61772 * 25 24 23 28 28 O 1.20820 * 120.00115 * 120.06825 * 27 25 24 29 29 O 1.34228 * 119.99739 * 300.06845 * 27 25 24 30 30 H 1.09003 * 109.47012 * 299.99800 * 1 2 3 31 31 H 1.08996 * 109.46839 * 59.99797 * 1 2 3 32 32 H 1.09004 * 109.47197 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58622 * 185.13556 * 4 2 1 34 34 H 1.08997 * 109.58835 * 305.41546 * 4 2 1 35 35 H 0.97001 * 119.99996 * 6.98305 * 8 6 5 36 36 H 1.08006 * 119.91520 * 0.02562 * 10 9 8 37 37 H 1.07995 * 120.08590 * 180.24985 * 11 10 9 38 38 H 0.96989 * 119.99953 * 180.02562 * 16 15 13 39 39 H 1.08004 * 120.08576 * 179.97438 * 21 12 11 40 40 H 1.07999 * 119.91412 * 179.97438 * 22 21 12 41 41 H 1.09000 * 109.59383 * 66.17968 * 23 5 4 42 42 H 1.09006 * 109.58623 * 186.46408 * 23 5 4 43 43 H 1.09004 * 109.49757 * 174.59027 * 24 23 5 44 44 H 1.08999 * 109.49598 * 294.65166 * 24 23 5 45 45 H 0.96699 * 116.99680 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 1.6522 -2.1380 1.1698 6 6 0.9754 -2.7221 2.1783 7 8 0.7613 -2.1056 3.2041 8 7 0.5359 -3.9897 2.0499 9 6 -0.2858 -4.5442 3.0276 10 6 -1.1951 -3.7361 3.7098 11 6 -2.0067 -4.2729 4.6654 12 6 -1.9172 -5.6453 4.9702 13 6 -2.7496 -6.2072 5.9622 14 1 -3.0380 -7.2462 5.9001 15 6 -3.2013 -5.4183 7.0255 16 7 -2.5771 -4.3084 7.3281 17 14 -4.6952 -5.9489 8.0135 18 1 -4.2520 -6.6946 9.2189 19 1 -5.4655 -4.7493 8.4289 20 1 -5.5555 -6.8248 7.1781 21 6 -0.9926 -6.4540 4.2807 22 6 -0.1911 -5.9038 3.3244 23 6 2.0153 -2.9038 -0.0304 24 6 1.5043 -2.1559 -1.2659 25 6 2.0415 -0.7230 -1.2482 26 1 3.1312 -0.7438 -1.2348 27 6 1.5686 0.0057 -2.4796 28 8 0.8921 1.0008 -2.3703 29 8 1.8989 -0.4508 -3.6979 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1274 -0.6455 1.2985 34 1 1.6023 -0.2713 2.1390 35 1 0.7922 -4.5159 1.2762 36 1 -1.2597 -2.6832 3.4778 37 1 -2.7131 -3.6467 5.1899 38 1 -2.8900 -3.7616 8.0656 39 1 -0.9182 -7.5069 4.5095 40 1 0.5185 -6.5225 2.7952 41 1 3.0993 -3.0036 -0.0861 42 1 1.5592 -3.8928 0.0153 43 1 1.8498 -2.6629 -2.1668 44 1 0.4145 -2.1366 -1.2545 45 1 1.5726 0.0504 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389882009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:26 Heat of formation + Delta-G solvation = -90.921305 kcal Electronic energy + Delta-G solvation = -28574.115778 eV Core-core repulsion = 24556.456790 eV Total energy + Delta-G solvation = -4017.658988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23564 -40.11349 -38.26108 -37.03789 -36.41998 -34.51448 -33.68203 -32.69886 -31.94309 -29.47374 -28.95400 -27.65816 -26.43691 -24.59995 -23.33545 -22.53852 -21.37592 -21.11507 -19.75356 -18.77822 -18.39916 -18.21968 -17.25280 -16.83624 -16.47659 -16.00520 -15.56829 -15.32377 -14.91568 -14.73866 -14.14955 -13.92813 -13.84165 -13.75447 -13.39007 -13.16981 -12.90203 -12.63156 -12.18523 -12.16857 -12.00812 -11.88035 -11.79629 -11.71785 -11.47831 -11.24857 -11.09546 -10.92161 -10.85814 -10.81003 -10.51219 -10.46368 -9.92801 -9.86546 -9.47194 -9.17536 -8.70036 -8.56120 -7.49351 -6.93045 -6.68581 -4.23453 1.85603 2.64895 2.68144 2.90853 3.09203 3.11473 3.14757 3.19528 3.70896 3.98530 4.13438 4.17747 4.37776 4.54795 4.69354 4.74538 4.93794 4.97806 5.06768 5.20434 5.35276 5.38434 5.48413 5.60402 5.69734 5.73601 5.81712 5.95436 5.99085 6.15506 6.16560 6.36174 6.40151 6.50796 6.83110 6.87182 7.08473 7.15152 7.29674 7.33825 7.55610 7.65176 7.83326 8.01492 8.09969 8.30069 8.46182 8.66631 8.93356 8.96044 9.13566 10.25682 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.002436 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.276967 B =11490.012057 C =11867.526697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.136 3.864 5 N -0.634 5.634 6 C 0.699 3.301 7 O -0.569 6.569 8 N -0.668 5.668 9 C 0.016 3.984 10 C -0.085 4.085 11 C -0.152 4.152 12 C 0.108 3.892 13 C -0.467 4.467 14 H 0.078 0.922 15 C 0.077 3.923 16 N -0.789 5.789 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.212 4.212 22 C -0.107 4.107 23 C 0.115 3.885 24 C -0.130 4.130 25 C -0.073 4.073 26 H 0.111 0.889 27 C 0.482 3.518 28 O -0.507 6.507 29 O -0.517 6.517 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.389 0.611 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.281 0.719 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 5.973 -19.110 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 H 0.107 0.893 4 C 0.013 3.987 5 N -0.374 5.374 6 C 0.401 3.599 7 O -0.445 6.445 8 N -0.316 5.316 9 C -0.077 4.077 10 C -0.105 4.105 11 C -0.172 4.172 12 C 0.106 3.894 13 C -0.496 4.496 14 H 0.096 0.904 15 C -0.141 4.141 16 N -0.414 5.414 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.232 4.232 22 C -0.128 4.128 23 C -0.009 4.009 24 C -0.168 4.168 25 C -0.092 4.092 26 H 0.129 0.871 27 C 0.324 3.676 28 O -0.394 6.394 29 O -0.329 6.329 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.224 0.776 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 9.641 6.690 -17.793 21.314 hybrid contribution -0.569 -0.069 -0.460 0.735 sum 9.072 6.620 -18.253 21.431 Atomic orbital electron populations 1.22025 0.93771 1.02383 1.03127 1.21440 0.97960 0.99320 0.92258 0.89255 1.21451 0.99040 0.79864 0.98346 1.47254 1.60782 1.11253 1.18068 1.15890 0.78565 0.82389 0.83058 1.90945 1.62026 1.63924 1.27652 1.42302 1.51954 1.12495 1.24819 1.16967 0.98905 0.92500 0.99319 1.20396 0.94743 0.97942 0.97400 1.20832 1.01582 0.96119 0.98678 1.17625 0.89587 0.91657 0.90561 1.19468 1.26481 0.97792 1.05889 0.90420 1.25894 0.96669 0.94216 0.97324 1.69878 1.34841 1.12171 1.24501 0.86385 0.81804 0.79218 0.79807 1.19666 1.20084 1.18455 1.20557 1.00993 0.98956 1.02717 1.20021 1.00324 0.93017 0.99424 1.21555 1.00297 0.94989 0.84059 1.21999 1.02551 0.93011 0.99258 1.21089 1.02630 0.96005 0.89468 0.87146 1.23553 0.76599 0.82741 0.84667 1.90694 1.35816 1.25897 1.87035 1.84540 1.73042 1.58396 1.16965 0.92210 0.90962 0.92498 0.91738 0.88016 0.77578 0.88058 0.87104 0.90852 0.88624 0.89316 0.91009 0.89800 0.89379 0.90182 0.73268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.40 37.16 0.31 -1.55 16 2 C -0.09 -0.87 2.35 -90.50 -0.21 -1.09 16 3 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 4 C 0.14 1.53 5.81 -3.71 -0.02 1.51 16 5 N -0.63 -8.00 2.41 -178.50 -0.43 -8.43 16 6 C 0.70 12.56 8.00 -86.92 -0.69 11.86 16 7 O -0.57 -12.98 13.51 5.29 0.07 -12.91 16 8 N -0.67 -11.80 5.22 -14.10 -0.07 -11.88 16 9 C 0.02 0.35 6.28 -83.57 -0.53 -0.18 16 10 C -0.08 -2.13 8.57 -39.79 -0.34 -2.47 16 11 C -0.15 -4.11 8.62 -39.26 -0.34 -4.45 16 12 C 0.11 2.93 5.51 -106.80 -0.59 2.34 16 13 C -0.47 -12.51 9.00 -37.85 -0.34 -12.85 16 14 H 0.08 1.98 7.92 -52.48 -0.42 1.57 16 15 C 0.08 1.99 5.05 -17.33 -0.09 1.90 16 16 N -0.79 -21.24 11.36 55.55 0.63 -20.60 16 17 Si 0.90 18.97 29.60 -169.99 -5.03 13.94 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.21 -5.17 9.74 -39.26 -0.38 -5.55 16 22 C -0.11 -2.36 9.89 -39.79 -0.39 -2.75 16 23 C 0.11 0.97 6.43 -3.71 -0.02 0.95 16 24 C -0.13 -0.95 4.96 -26.61 -0.13 -1.09 16 25 C -0.07 -0.56 2.37 -91.73 -0.22 -0.77 16 26 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 27 C 0.48 4.12 7.34 36.01 0.26 4.38 16 28 O -0.51 -5.88 14.51 -18.75 -0.27 -6.15 16 29 O -0.52 -3.15 13.30 -39.25 -0.52 -3.68 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.89 5.65 -51.93 -0.29 0.60 16 32 H 0.06 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.40 7.04 -51.93 -0.37 1.04 16 35 H 0.39 5.31 6.28 -40.82 -0.26 5.06 16 36 H 0.10 2.57 6.44 -52.48 -0.34 2.24 16 37 H 0.11 3.10 6.54 -52.49 -0.34 2.76 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.67 5.57 -51.93 -0.29 0.38 16 43 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.08 0.72 6.34 -51.93 -0.33 0.39 16 45 H 0.41 0.96 9.10 45.56 0.41 1.37 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -34.03 359.56 -8.97 -43.00 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.04 Total: 11.10 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.72 Total: -9.80 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.13 Total: -40.91 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.72 Total: -22.74 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.03 -8.97 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.922 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds