Wall clock time and date at job start Tue Mar 31 2020 17:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50057 * 2 1 4 4 C 1.53188 * 109.49561 * 120.06655 * 2 1 3 5 5 N 1.46928 * 108.77810 * 65.34853 * 4 2 1 6 6 C 1.34775 * 120.63088 * 233.58680 * 5 4 2 7 7 O 1.21581 * 120.00145 * 354.94255 * 6 5 4 8 8 N 1.34775 * 120.00134 * 174.94561 * 6 5 4 9 9 C 1.39240 * 120.00154 * 186.97825 * 8 6 5 10 10 C 1.39474 * 119.83442 * 33.31390 * 9 8 6 11 11 C 1.36382 * 120.16927 * 179.75977 * 10 9 8 12 12 C 1.40864 * 119.82434 * 0.51855 * 11 10 9 13 13 C 1.41162 * 120.16061 * 179.71655 * 12 11 10 14 14 H 1.08004 * 119.99910 * 151.26653 * 13 12 11 15 15 C 1.39892 * 120.00181 * 331.27635 * 13 12 11 16 16 N 1.30889 * 119.99899 * 340.34920 * 15 13 12 17 17 Si 1.86800 * 120.00339 * 160.35449 * 15 13 12 18 18 H 1.48506 * 109.46958 * 94.97224 * 17 15 13 19 19 H 1.48493 * 109.47244 * 214.97440 * 17 15 13 20 20 H 1.48496 * 109.46949 * 334.97461 * 17 15 13 21 21 C 1.40865 * 119.67604 * 359.73785 * 12 11 10 22 22 C 1.36374 * 119.82816 * 0.02562 * 21 12 11 23 23 C 1.46920 * 118.73777 * 53.60723 * 5 4 2 24 24 C 1.53198 * 108.77753 * 306.39250 * 23 5 4 25 25 C 1.53038 * 109.30988 * 54.63564 * 24 23 5 26 26 H 1.09000 * 109.46106 * 58.65813 * 25 24 23 27 27 C 1.50707 * 109.45890 * 178.61772 * 25 24 23 28 28 O 1.20820 * 120.00115 * 120.06825 * 27 25 24 29 29 O 1.34228 * 119.99739 * 300.06845 * 27 25 24 30 30 H 1.09003 * 109.47012 * 299.99800 * 1 2 3 31 31 H 1.08996 * 109.46839 * 59.99797 * 1 2 3 32 32 H 1.09004 * 109.47197 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58622 * 185.13556 * 4 2 1 34 34 H 1.08997 * 109.58835 * 305.41546 * 4 2 1 35 35 H 0.97001 * 119.99996 * 6.98305 * 8 6 5 36 36 H 1.08006 * 119.91520 * 0.02562 * 10 9 8 37 37 H 1.07995 * 120.08590 * 180.24985 * 11 10 9 38 38 H 0.96989 * 119.99953 * 180.02562 * 16 15 13 39 39 H 1.08004 * 120.08576 * 179.97438 * 21 12 11 40 40 H 1.07999 * 119.91412 * 179.97438 * 22 21 12 41 41 H 1.09000 * 109.59383 * 66.17968 * 23 5 4 42 42 H 1.09006 * 109.58623 * 186.46408 * 23 5 4 43 43 H 1.09004 * 109.49757 * 174.59027 * 24 23 5 44 44 H 1.08999 * 109.49598 * 294.65166 * 24 23 5 45 45 H 0.96699 * 116.99680 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 1.6522 -2.1380 1.1698 6 6 0.9754 -2.7221 2.1783 7 8 0.7613 -2.1056 3.2041 8 7 0.5359 -3.9897 2.0499 9 6 -0.2858 -4.5442 3.0276 10 6 -1.1951 -3.7361 3.7098 11 6 -2.0067 -4.2729 4.6654 12 6 -1.9172 -5.6453 4.9702 13 6 -2.7496 -6.2072 5.9622 14 1 -3.0380 -7.2462 5.9001 15 6 -3.2013 -5.4183 7.0255 16 7 -2.5771 -4.3084 7.3281 17 14 -4.6952 -5.9489 8.0135 18 1 -4.2520 -6.6946 9.2189 19 1 -5.4655 -4.7493 8.4289 20 1 -5.5555 -6.8248 7.1781 21 6 -0.9926 -6.4540 4.2807 22 6 -0.1911 -5.9038 3.3244 23 6 2.0153 -2.9038 -0.0304 24 6 1.5043 -2.1559 -1.2659 25 6 2.0415 -0.7230 -1.2482 26 1 3.1312 -0.7438 -1.2348 27 6 1.5686 0.0057 -2.4796 28 8 0.8921 1.0008 -2.3703 29 8 1.8989 -0.4508 -3.6979 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1274 -0.6455 1.2985 34 1 1.6023 -0.2713 2.1390 35 1 0.7922 -4.5159 1.2762 36 1 -1.2597 -2.6832 3.4778 37 1 -2.7131 -3.6467 5.1899 38 1 -2.8900 -3.7616 8.0656 39 1 -0.9182 -7.5069 4.5095 40 1 0.5185 -6.5225 2.7952 41 1 3.0993 -3.0036 -0.0861 42 1 1.5592 -3.8928 0.0153 43 1 1.8498 -2.6629 -2.1668 44 1 0.4145 -2.1366 -1.2545 45 1 1.5726 0.0504 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389882009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:25 Heat of formation + Delta-G solvation = -113.022693 kcal Electronic energy + Delta-G solvation = -28575.074166 eV Core-core repulsion = 24556.456790 eV Total energy + Delta-G solvation = -4018.617376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.10302 -41.24331 -39.60242 -38.47385 -37.08632 -36.21280 -35.06202 -34.14951 -32.77402 -31.40760 -30.77026 -28.49086 -27.67566 -26.25400 -24.09201 -23.53908 -23.10417 -22.63985 -21.11719 -19.86298 -19.37958 -19.18297 -18.97861 -17.98413 -17.53989 -17.11360 -16.74550 -16.59472 -16.26162 -15.73089 -15.68676 -15.21716 -15.10339 -14.68350 -14.51005 -14.41349 -14.22432 -13.96952 -13.85179 -13.67224 -13.35894 -12.99533 -12.89020 -12.79454 -12.70938 -12.66423 -12.44318 -12.29240 -12.06109 -11.76069 -11.73322 -11.59618 -11.56913 -11.28949 -11.16669 -10.96002 -10.51473 -9.64524 -9.43665 -8.79288 -8.57406 -6.23270 0.88295 1.15191 1.22715 1.38249 1.45697 1.54631 1.70693 2.10080 2.21875 2.26746 2.79458 3.03726 3.46308 3.62523 3.74843 3.93161 3.93679 4.15267 4.33430 4.35889 4.44263 4.47795 4.55283 4.59094 4.68547 4.70417 4.83259 4.87301 4.96046 5.06860 5.07515 5.11629 5.13692 5.19634 5.31009 5.32960 5.45466 5.58685 5.67359 5.71172 5.79843 6.08429 6.12946 6.15696 6.38343 6.70245 6.95731 7.03762 7.04182 7.06798 7.68832 8.37265 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.002436 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.276967 B =11490.012057 C =11867.526697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 H 0.097 0.903 4 C 0.135 3.865 5 N -0.622 5.622 6 C 0.694 3.306 7 O -0.626 6.626 8 N -0.658 5.658 9 C 0.033 3.967 10 C -0.099 4.099 11 C -0.176 4.176 12 C 0.075 3.925 13 C -0.501 4.501 14 H 0.082 0.918 15 C 0.032 3.968 16 N -0.833 5.833 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.254 1.254 21 C -0.218 4.218 22 C -0.101 4.101 23 C 0.108 3.892 24 C -0.123 4.123 25 C -0.070 4.070 26 H 0.145 0.855 27 C 0.488 3.512 28 O -0.545 6.545 29 O -0.509 6.509 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.412 0.588 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.285 0.715 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.059 0.941 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.085 4.461 -21.765 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 H 0.115 0.885 4 C 0.012 3.988 5 N -0.360 5.360 6 C 0.396 3.604 7 O -0.506 6.506 8 N -0.309 5.309 9 C -0.061 4.061 10 C -0.120 4.120 11 C -0.196 4.196 12 C 0.073 3.927 13 C -0.531 4.531 14 H 0.100 0.900 15 C -0.182 4.182 16 N -0.459 5.459 17 Si 0.801 3.199 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.178 1.178 21 C -0.238 4.238 22 C -0.121 4.121 23 C -0.014 4.014 24 C -0.161 4.161 25 C -0.089 4.089 26 H 0.162 0.838 27 C 0.332 3.668 28 O -0.436 6.436 29 O -0.322 6.322 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.252 0.748 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.078 0.922 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 11.927 5.160 -20.565 24.328 hybrid contribution -1.107 0.481 0.134 1.215 sum 10.820 5.642 -20.431 23.798 Atomic orbital electron populations 1.21959 0.96021 1.01070 1.01792 1.21326 0.95888 1.00010 0.92961 0.88506 1.21563 1.00654 0.78911 0.97708 1.47276 1.58910 1.11887 1.17923 1.16124 0.78695 0.82055 0.83514 1.90921 1.64138 1.65094 1.30490 1.42057 1.51239 1.12884 1.24716 1.17013 0.97665 0.92617 0.98770 1.20400 0.95813 0.97705 0.98062 1.20708 1.02465 0.96509 0.99921 1.17956 0.91075 0.91917 0.91787 1.19751 1.28117 0.98403 1.06796 0.89965 1.26819 0.99249 0.93964 0.98191 1.69961 1.36671 1.13686 1.25566 0.85222 0.77556 0.78867 0.78218 1.18562 1.19634 1.17792 1.20854 1.00504 0.99617 1.02819 1.20387 1.00106 0.93033 0.98572 1.21961 1.02560 0.94736 0.82176 1.21962 1.01360 0.92874 0.99884 1.21091 1.04454 0.95495 0.87813 0.83772 1.23620 0.75656 0.82014 0.85504 1.90698 1.37598 1.27694 1.87607 1.84486 1.72561 1.58291 1.16852 0.94441 0.91338 0.93766 0.88446 0.91484 0.74787 0.89486 0.89723 0.90430 0.86989 0.84577 0.87485 0.89024 0.86307 0.92189 0.71249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.40 71.98 0.60 -3.11 16 2 C -0.08 -1.48 2.35 -10.72 -0.03 -1.50 16 3 H 0.10 1.64 8.07 -2.39 -0.02 1.62 16 4 C 0.13 2.84 5.81 86.36 0.50 3.34 16 5 N -0.62 -14.51 2.41 -836.91 -2.02 -16.53 16 6 C 0.69 24.64 8.00 179.06 1.43 26.07 16 7 O -0.63 -29.63 13.51 -3.97 -0.05 -29.68 16 8 N -0.66 -22.22 5.22 -316.79 -1.65 -23.87 16 9 C 0.03 1.48 6.28 38.56 0.24 1.72 16 10 C -0.10 -5.22 8.57 22.13 0.19 -5.03 16 11 C -0.18 -10.07 8.62 22.48 0.19 -9.88 16 12 C 0.08 4.20 5.51 -21.28 -0.12 4.08 16 13 C -0.50 -27.76 9.00 23.39 0.21 -27.55 16 14 H 0.08 4.30 7.92 -2.91 -0.02 4.27 16 15 C 0.03 1.70 5.05 85.23 0.43 2.13 16 16 N -0.83 -47.11 11.36 21.82 0.25 -46.87 16 17 Si 0.98 39.91 29.60 68.60 2.03 41.94 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 21 C -0.22 -10.53 9.74 22.48 0.22 -10.31 16 22 C -0.10 -4.22 9.89 22.14 0.22 -4.00 16 23 C 0.11 1.36 6.43 86.37 0.56 1.91 16 24 C -0.12 -1.32 4.96 30.67 0.15 -1.17 16 25 C -0.07 -0.82 2.37 -11.51 -0.03 -0.84 16 26 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 27 C 0.49 6.97 7.34 71.24 0.52 7.49 16 28 O -0.55 -11.95 14.51 21.98 0.32 -11.63 16 29 O -0.51 -4.31 13.30 -51.40 -0.68 -5.00 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.74 5.65 -2.39 -0.01 1.73 16 32 H 0.04 1.17 5.97 -2.39 -0.01 1.16 16 33 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.92 7.04 -2.39 -0.02 1.91 16 35 H 0.41 9.87 6.28 -92.71 -0.58 9.29 16 36 H 0.09 4.74 6.44 -2.91 -0.02 4.73 16 37 H 0.08 5.16 6.54 -2.91 -0.02 5.14 16 38 H 0.29 14.73 8.30 -92.72 -0.77 13.96 16 39 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 1.04 5.57 -2.38 -0.01 1.02 16 43 H 0.12 0.66 8.08 -2.39 -0.02 0.64 16 44 H 0.06 0.93 6.34 -2.39 -0.02 0.91 16 45 H 0.43 0.63 9.10 -74.06 -0.67 -0.04 16 Total: -1.00 -80.61 359.56 3.29 -77.32 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.20 Total: 30.97 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 5.30 Total: -16.66 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.42 Total: -87.26 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.42 Total: -46.31 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -80.61 3.29 -77.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389882009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.698 kcal (2) G-P(sol) polarization free energy of solvation -80.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds