Wall clock time and date at job start Tue Mar 31 2020 17:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58633 * 2 1 4 4 C 1.53183 * 109.70516 * 239.64038 * 2 1 3 5 5 C 1.53044 * 109.31605 * 185.51104 * 4 2 1 6 6 C 1.53032 * 109.53895 * 61.35902 * 5 4 2 7 7 H 1.09009 * 109.49715 * 58.59294 * 6 5 4 8 8 C 1.50703 * 109.50011 * 178.68361 * 6 5 4 9 9 O 1.20821 * 119.99523 * 0.02562 * 8 6 5 10 10 O 1.34223 * 119.99969 * 180.02562 * 8 6 5 11 11 C 1.53618 * 109.24651 * 298.51715 * 6 5 4 12 12 N 1.46927 * 108.54461 * 54.85270 * 11 6 5 13 13 C 1.34779 * 120.62845 * 126.36774 * 12 11 6 14 14 O 1.21593 * 119.99647 * 187.83355 * 13 12 11 15 15 N 1.34775 * 120.00440 * 7.83292 * 13 12 11 16 16 C 1.39950 * 120.00048 * 173.34620 * 15 13 12 17 17 C 1.39287 * 119.94740 * 35.00608 * 16 15 13 18 18 C 1.38486 * 120.42868 * 180.30113 * 17 16 15 19 19 C 1.37677 * 120.32259 * 359.67238 * 18 17 16 20 20 C 1.40746 * 119.88353 * 0.02626 * 19 18 17 21 21 C 1.41403 * 120.20950 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00757 * 37.70878 * 21 20 19 23 23 C 1.39937 * 119.99876 * 217.70788 * 21 20 19 24 24 N 1.30828 * 119.99727 * 19.01405 * 23 21 20 25 25 Si 1.86798 * 120.00398 * 199.01406 * 23 21 20 26 26 H 1.48497 * 109.46911 * 59.99741 * 25 23 21 27 27 H 1.48489 * 109.47390 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47106 * 300.00301 * 25 23 21 29 29 C 1.38240 * 119.94946 * 214.69892 * 16 15 13 30 30 H 1.09008 * 109.46976 * 301.00037 * 1 2 3 31 31 H 1.08998 * 109.46917 * 60.99913 * 1 2 3 32 32 H 1.08999 * 109.46952 * 181.00114 * 1 2 3 33 33 H 1.09006 * 109.49976 * 305.45691 * 4 2 1 34 34 H 1.09004 * 109.50150 * 65.55660 * 4 2 1 35 35 H 1.08999 * 109.46204 * 181.38886 * 5 4 2 36 36 H 1.09003 * 109.45617 * 301.35576 * 5 4 2 37 37 H 0.96703 * 116.99780 * 180.02562 * 10 8 6 38 38 H 1.09004 * 109.74134 * 295.11590 * 11 6 5 39 39 H 1.09006 * 109.66833 * 174.54553 * 11 6 5 40 40 H 0.97001 * 119.99222 * 353.35315 * 15 13 12 41 41 H 1.08005 * 119.78567 * 359.97438 * 17 16 15 42 42 H 1.08000 * 119.83969 * 179.69678 * 18 17 16 43 43 H 1.08004 * 120.06076 * 180.02562 * 19 18 17 44 44 H 0.97004 * 120.00130 * 179.97438 * 24 23 21 45 45 H 1.08004 * 120.15518 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 3.5706 -0.8445 -1.1672 6 6 3.9602 -1.6607 0.0672 7 1 3.5037 -2.6489 0.0089 8 6 5.4596 -1.8014 0.1247 9 8 6.1466 -1.2999 -0.7334 10 8 6.0316 -2.4837 1.1290 11 6 3.4660 -0.9374 1.3292 12 7 2.0226 -0.6979 1.1954 13 6 1.1672 -1.1058 2.1538 14 8 -0.0324 -1.0314 1.9696 15 7 1.6413 -1.5963 3.3161 16 6 0.7603 -1.8893 4.3633 17 6 -0.5116 -2.3836 4.0841 18 6 -1.3937 -2.6712 5.1122 19 6 -1.0200 -2.4776 6.4231 20 6 0.2643 -1.9847 6.7208 21 6 0.6551 -1.7828 8.0646 22 1 0.3425 -2.4794 8.8285 23 6 1.4469 -0.6803 8.4050 24 7 1.5208 0.3462 7.5972 25 14 2.3984 -0.6743 10.0124 26 1 3.3471 -1.8166 10.0303 27 1 3.1531 0.5985 10.1362 28 1 1.4510 -0.8000 11.1490 29 6 1.1560 -1.6938 5.6733 30 1 -0.3633 0.5293 0.8809 31 1 -0.3633 0.4982 -0.8988 32 1 -0.3633 -1.0275 0.0180 33 1 1.6081 -1.7258 -1.2903 34 1 1.7689 -0.1674 -2.1365 35 1 3.9430 -1.3409 -2.0633 36 1 4.0072 0.1518 -1.0962 37 1 6.9966 -2.5465 1.1234 38 1 3.9861 0.0147 1.4353 39 1 3.6537 -1.5583 2.2052 40 1 2.5933 -1.7459 3.4269 41 1 -0.8138 -2.5388 3.0588 42 1 -2.3793 -3.0494 4.8847 43 1 -1.7111 -2.7036 7.2217 44 1 2.0694 1.1106 7.8332 45 1 2.1437 -1.3149 5.8909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397067089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:26 Heat of formation + Delta-G solvation = -82.729472 kcal Electronic energy + Delta-G solvation = -28924.469263 eV Core-core repulsion = 24907.165499 eV Total energy + Delta-G solvation = -4017.303764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 7.25 seconds Orbital eigenvalues (eV) -41.13734 -40.24856 -38.15973 -36.91880 -36.38331 -34.71296 -33.44441 -32.98411 -32.34749 -29.56090 -28.58001 -27.70058 -25.25709 -25.10022 -23.63183 -22.52509 -21.30322 -20.77712 -20.30121 -19.35515 -18.37040 -17.82706 -17.38956 -16.75635 -16.44987 -15.77384 -15.44515 -15.24069 -14.74712 -14.66987 -14.44928 -14.12670 -13.87918 -13.71714 -13.50671 -12.93699 -12.82665 -12.67055 -12.38736 -12.30456 -12.17616 -11.85259 -11.71768 -11.45766 -11.23209 -11.18998 -11.12323 -11.06381 -11.03337 -10.82163 -10.64762 -10.47067 -9.93623 -9.84447 -9.26037 -9.01441 -8.68868 -8.56797 -7.28620 -6.91184 -6.66393 -4.33566 1.81716 2.53796 2.75650 2.87290 2.91122 3.10557 3.13774 3.23592 3.59650 4.00676 4.09044 4.20689 4.37260 4.56593 4.69865 4.73544 4.88971 5.05306 5.10530 5.19065 5.39333 5.44683 5.51215 5.62306 5.63957 5.71025 5.84854 5.96831 6.16492 6.22663 6.32302 6.36782 6.65856 6.67576 6.82635 6.83124 6.97588 7.05081 7.19632 7.32587 7.54816 7.64367 7.80107 7.96143 8.05270 8.27067 8.39049 8.61506 8.92003 8.95008 9.02815 10.31837 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003434 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.985464 B = 8151.629146 C = 9615.783389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.131 4.131 5 C -0.103 4.103 6 C -0.096 4.096 7 H 0.116 0.884 8 C 0.487 3.513 9 O -0.513 6.513 10 O -0.512 6.512 11 C 0.124 3.876 12 N -0.630 5.630 13 C 0.706 3.294 14 O -0.558 6.558 15 N -0.679 5.679 16 C 0.160 3.840 17 C -0.217 4.217 18 C -0.091 4.091 19 C -0.217 4.217 20 C 0.132 3.868 21 C -0.485 4.485 22 H 0.078 0.922 23 C 0.083 3.917 24 N -0.803 5.803 25 Si 0.901 3.099 26 H -0.265 1.265 27 H -0.281 1.281 28 H -0.267 1.267 29 C -0.178 4.178 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.394 0.606 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.278 0.722 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -1.767 -15.085 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.056 3.944 3 H 0.087 0.913 4 C -0.169 4.169 5 C -0.141 4.141 6 C -0.116 4.116 7 H 0.134 0.866 8 C 0.328 3.672 9 O -0.400 6.400 10 O -0.324 6.324 11 C -0.001 4.001 12 N -0.369 5.369 13 C 0.409 3.591 14 O -0.434 6.434 15 N -0.328 5.328 16 C 0.067 3.933 17 C -0.238 4.238 18 C -0.110 4.110 19 C -0.237 4.237 20 C 0.129 3.871 21 C -0.516 4.516 22 H 0.096 0.904 23 C -0.134 4.134 24 N -0.429 5.429 25 Si 0.725 3.275 26 H -0.190 1.190 27 H -0.206 1.206 28 H -0.192 1.192 29 C -0.199 4.199 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.271 0.729 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.230 0.770 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.025 -1.265 -15.491 17.057 hybrid contribution 1.876 0.091 0.834 2.055 sum 8.901 -1.174 -14.657 17.188 Atomic orbital electron populations 1.22211 0.91931 1.04143 1.00976 1.21153 0.96364 0.94386 0.82513 0.91254 1.22064 0.94432 1.02131 0.98282 1.21445 0.96304 1.00562 0.95748 1.21572 0.87481 1.03490 0.99064 0.86621 1.23323 0.91788 0.73974 0.78078 1.90725 1.65027 1.45355 1.38940 1.84566 1.29423 1.69287 1.49128 1.21534 0.82151 1.00354 0.96018 1.47316 1.05261 1.62624 1.21692 1.15889 0.85053 0.78190 0.79962 1.90965 1.13145 1.60398 1.78893 1.42891 1.10186 1.66815 1.12869 1.17413 0.90596 0.99553 0.85703 1.20566 0.94604 1.10074 0.98542 1.20504 0.97406 0.99967 0.93120 1.21185 0.96679 1.11077 0.94741 1.17279 0.89281 0.87611 0.92891 1.19341 1.29534 1.08910 0.93770 0.90408 1.25756 0.94890 0.94473 0.98277 1.69832 1.31931 1.04022 1.37153 0.86505 0.80300 0.78144 0.82511 1.18991 1.20610 1.19157 1.20822 1.00488 1.08882 0.89754 0.90330 0.94283 0.90769 0.90967 0.89964 0.90594 0.90657 0.72913 0.90654 0.88969 0.77020 0.86961 0.88980 0.88758 0.91153 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.60 37.16 0.28 -1.52 16 2 C 0.16 1.82 3.48 -67.60 -0.24 1.58 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -1.14 5.38 -26.61 -0.14 -1.28 16 5 C -0.10 -0.87 4.46 -26.69 -0.12 -0.99 16 6 C -0.10 -0.85 2.79 -91.43 -0.26 -1.11 16 7 H 0.12 0.99 8.14 -51.92 -0.42 0.56 16 8 C 0.49 4.54 7.62 36.01 0.27 4.81 16 9 O -0.51 -6.10 16.74 -18.75 -0.31 -6.41 16 10 O -0.51 -3.84 13.36 -39.24 -0.52 -4.36 16 11 C 0.12 1.28 5.61 -3.49 -0.02 1.26 16 12 N -0.63 -8.28 2.97 -170.64 -0.51 -8.78 16 13 C 0.71 12.46 8.06 -86.92 -0.70 11.76 16 14 O -0.56 -11.40 9.12 5.28 0.05 -11.35 16 15 N -0.68 -12.54 5.24 -14.27 -0.07 -12.61 16 16 C 0.16 3.64 6.30 -83.76 -0.53 3.12 16 17 C -0.22 -5.04 8.72 -39.10 -0.34 -5.38 16 18 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 19 C -0.22 -5.36 9.79 -38.84 -0.38 -5.74 16 20 C 0.13 3.48 5.38 -106.85 -0.57 2.91 16 21 C -0.48 -12.81 8.97 -37.74 -0.34 -13.15 16 22 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 23 C 0.08 2.08 5.04 -17.34 -0.09 2.00 16 24 N -0.80 -21.09 12.00 55.55 0.67 -20.43 16 25 Si 0.90 18.72 29.60 -169.99 -5.03 13.69 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 27 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 28 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 29 C -0.18 -4.44 8.60 -38.69 -0.33 -4.77 16 30 H 0.08 1.29 6.64 -51.92 -0.34 0.95 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.12 6.85 -51.93 -0.36 0.76 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.41 1.42 9.10 45.56 0.41 1.84 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.93 5.70 -51.93 -0.30 0.64 16 40 H 0.39 6.10 6.34 -40.82 -0.26 5.84 16 41 H 0.11 2.58 6.13 -52.48 -0.32 2.26 16 42 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 43 H 0.09 2.20 8.06 -52.48 -0.42 1.77 16 44 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 45 H 0.10 2.61 7.21 -52.48 -0.38 2.23 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -32.05 363.51 -9.47 -41.52 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.31 Total: 12.26 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.90 Total: -9.00 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.09 Total: -41.82 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.79 Total: -22.13 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.05 -9.47 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397067089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.210 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.26 seconds