Wall clock time and date at job start Tue Mar 31 2020 17:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58633 * 2 1 4 4 C 1.53183 * 109.70516 * 239.64038 * 2 1 3 5 5 C 1.53044 * 109.31605 * 185.51104 * 4 2 1 6 6 C 1.53032 * 109.53895 * 61.35902 * 5 4 2 7 7 H 1.09009 * 109.49715 * 58.59294 * 6 5 4 8 8 C 1.50703 * 109.50011 * 178.68361 * 6 5 4 9 9 O 1.20821 * 119.99523 * 0.02562 * 8 6 5 10 10 O 1.34223 * 119.99969 * 180.02562 * 8 6 5 11 11 C 1.53618 * 109.24651 * 298.51715 * 6 5 4 12 12 N 1.46927 * 108.54461 * 54.85270 * 11 6 5 13 13 C 1.34779 * 120.62845 * 126.36774 * 12 11 6 14 14 O 1.21593 * 119.99647 * 187.83355 * 13 12 11 15 15 N 1.34775 * 120.00440 * 7.83292 * 13 12 11 16 16 C 1.39950 * 120.00048 * 173.34620 * 15 13 12 17 17 C 1.39287 * 119.94740 * 35.00608 * 16 15 13 18 18 C 1.38486 * 120.42868 * 180.30113 * 17 16 15 19 19 C 1.37677 * 120.32259 * 359.67238 * 18 17 16 20 20 C 1.40746 * 119.88353 * 0.02626 * 19 18 17 21 21 C 1.41403 * 120.20950 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00757 * 37.70878 * 21 20 19 23 23 C 1.39937 * 119.99876 * 217.70788 * 21 20 19 24 24 N 1.30828 * 119.99727 * 19.01405 * 23 21 20 25 25 Si 1.86798 * 120.00398 * 199.01406 * 23 21 20 26 26 H 1.48497 * 109.46911 * 59.99741 * 25 23 21 27 27 H 1.48489 * 109.47390 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47106 * 300.00301 * 25 23 21 29 29 C 1.38240 * 119.94946 * 214.69892 * 16 15 13 30 30 H 1.09008 * 109.46976 * 301.00037 * 1 2 3 31 31 H 1.08998 * 109.46917 * 60.99913 * 1 2 3 32 32 H 1.08999 * 109.46952 * 181.00114 * 1 2 3 33 33 H 1.09006 * 109.49976 * 305.45691 * 4 2 1 34 34 H 1.09004 * 109.50150 * 65.55660 * 4 2 1 35 35 H 1.08999 * 109.46204 * 181.38886 * 5 4 2 36 36 H 1.09003 * 109.45617 * 301.35576 * 5 4 2 37 37 H 0.96703 * 116.99780 * 180.02562 * 10 8 6 38 38 H 1.09004 * 109.74134 * 295.11590 * 11 6 5 39 39 H 1.09006 * 109.66833 * 174.54553 * 11 6 5 40 40 H 0.97001 * 119.99222 * 353.35315 * 15 13 12 41 41 H 1.08005 * 119.78567 * 359.97438 * 17 16 15 42 42 H 1.08000 * 119.83969 * 179.69678 * 18 17 16 43 43 H 1.08004 * 120.06076 * 180.02562 * 19 18 17 44 44 H 0.97004 * 120.00130 * 179.97438 * 24 23 21 45 45 H 1.08004 * 120.15518 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 3.5706 -0.8445 -1.1672 6 6 3.9602 -1.6607 0.0672 7 1 3.5037 -2.6489 0.0089 8 6 5.4596 -1.8014 0.1247 9 8 6.1466 -1.2999 -0.7334 10 8 6.0316 -2.4837 1.1290 11 6 3.4660 -0.9374 1.3292 12 7 2.0226 -0.6979 1.1954 13 6 1.1672 -1.1058 2.1538 14 8 -0.0324 -1.0314 1.9696 15 7 1.6413 -1.5963 3.3161 16 6 0.7603 -1.8893 4.3633 17 6 -0.5116 -2.3836 4.0841 18 6 -1.3937 -2.6712 5.1122 19 6 -1.0200 -2.4776 6.4231 20 6 0.2643 -1.9847 6.7208 21 6 0.6551 -1.7828 8.0646 22 1 0.3425 -2.4794 8.8285 23 6 1.4469 -0.6803 8.4050 24 7 1.5208 0.3462 7.5972 25 14 2.3984 -0.6743 10.0124 26 1 3.3471 -1.8166 10.0303 27 1 3.1531 0.5985 10.1362 28 1 1.4510 -0.8000 11.1490 29 6 1.1560 -1.6938 5.6733 30 1 -0.3633 0.5293 0.8809 31 1 -0.3633 0.4982 -0.8988 32 1 -0.3633 -1.0275 0.0180 33 1 1.6081 -1.7258 -1.2903 34 1 1.7689 -0.1674 -2.1365 35 1 3.9430 -1.3409 -2.0633 36 1 4.0072 0.1518 -1.0962 37 1 6.9966 -2.5465 1.1234 38 1 3.9861 0.0147 1.4353 39 1 3.6537 -1.5583 2.2052 40 1 2.5933 -1.7459 3.4269 41 1 -0.8138 -2.5388 3.0588 42 1 -2.3793 -3.0494 4.8847 43 1 -1.7111 -2.7036 7.2217 44 1 2.0694 1.1106 7.8332 45 1 2.1437 -1.3149 5.8909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397067089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:20 Heat of formation + Delta-G solvation = -101.985648 kcal Electronic energy + Delta-G solvation = -28925.304273 eV Core-core repulsion = 24907.165499 eV Total energy + Delta-G solvation = -4018.138774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.16840 -41.26127 -39.60803 -38.26113 -37.13958 -36.22824 -35.19935 -33.98813 -33.51702 -31.47199 -30.07085 -28.84766 -27.09396 -26.15233 -24.50663 -23.67267 -23.09620 -22.04125 -21.41771 -20.68203 -19.17990 -19.09307 -18.95996 -17.72555 -17.57323 -17.03880 -16.88527 -16.54368 -16.39773 -16.01867 -15.55078 -15.29858 -15.04334 -14.71628 -14.58014 -14.43719 -14.38151 -14.08580 -13.63551 -13.54092 -13.28775 -13.19463 -13.01246 -12.78076 -12.57279 -12.50826 -12.28440 -12.18069 -12.05854 -11.95847 -11.80573 -11.74425 -11.62665 -11.59568 -11.03095 -10.79347 -10.15413 -9.68646 -9.20859 -8.71186 -8.53547 -6.33201 0.91605 1.06640 1.08950 1.41787 1.49645 1.53070 1.56807 2.02169 2.20292 2.26864 2.79700 2.88009 3.42787 3.59888 3.68705 3.80192 3.91631 4.09540 4.24482 4.34191 4.37348 4.46079 4.60041 4.62353 4.72227 4.77530 4.83880 4.88838 4.95065 5.05509 5.10814 5.13777 5.15590 5.20954 5.31024 5.36577 5.45053 5.57946 5.70607 5.76394 5.85691 5.99136 6.10044 6.13678 6.42093 6.69006 6.92284 6.95313 6.98963 7.04392 7.57680 8.44352 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003434 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.985464 B = 8151.629146 C = 9615.783389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.084 0.916 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.091 4.091 7 H 0.122 0.878 8 C 0.496 3.504 9 O -0.539 6.539 10 O -0.511 6.511 11 C 0.120 3.880 12 N -0.620 5.620 13 C 0.701 3.299 14 O -0.589 6.589 15 N -0.677 5.677 16 C 0.168 3.832 17 C -0.224 4.224 18 C -0.089 4.089 19 C -0.237 4.237 20 C 0.104 3.896 21 C -0.518 4.518 22 H 0.076 0.924 23 C 0.044 3.956 24 N -0.838 5.838 25 Si 0.975 3.025 26 H -0.259 1.259 27 H -0.272 1.272 28 H -0.263 1.263 29 C -0.193 4.193 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.430 0.570 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.407 0.593 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.284 0.716 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -1.678 -16.151 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.101 0.899 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.111 4.111 7 H 0.140 0.860 8 C 0.338 3.662 9 O -0.429 6.429 10 O -0.325 6.325 11 C -0.003 4.003 12 N -0.358 5.358 13 C 0.404 3.596 14 O -0.468 6.468 15 N -0.327 5.327 16 C 0.074 3.926 17 C -0.245 4.245 18 C -0.108 4.108 19 C -0.257 4.257 20 C 0.102 3.898 21 C -0.549 4.549 22 H 0.094 0.906 23 C -0.170 4.170 24 N -0.465 5.465 25 Si 0.796 3.204 26 H -0.183 1.183 27 H -0.196 1.196 28 H -0.187 1.187 29 C -0.215 4.215 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.292 0.708 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.246 0.754 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.540 -1.183 -16.594 18.700 hybrid contribution 1.399 0.062 1.052 1.751 sum 9.938 -1.122 -15.542 18.482 Atomic orbital electron populations 1.22018 0.93409 1.02482 1.00507 1.21401 0.95206 0.95449 0.82891 0.89850 1.21982 0.94476 1.01837 0.97430 1.21418 0.95851 1.00594 0.95719 1.21517 0.87456 1.03710 0.98401 0.86046 1.23237 0.91682 0.73424 0.77811 1.90724 1.65571 1.46590 1.40004 1.84532 1.31202 1.68552 1.48243 1.21704 0.80304 1.01285 0.97026 1.47330 1.06018 1.61492 1.20967 1.16078 0.85192 0.78100 0.80239 1.90959 1.14770 1.61521 1.79549 1.42770 1.10416 1.67073 1.12413 1.17423 0.91068 0.97903 0.86165 1.20754 0.94927 1.10079 0.98738 1.20811 0.98598 0.98932 0.92423 1.21348 0.96584 1.12016 0.95754 1.17650 0.90236 0.88335 0.93601 1.19606 1.31401 1.09848 0.94046 0.90556 1.26571 0.95042 0.93448 1.01942 1.69894 1.32615 1.04674 1.39272 0.85371 0.78743 0.78513 0.77750 1.18290 1.19641 1.18712 1.20743 1.00109 1.10144 0.90547 0.94012 0.91517 0.92880 0.91366 0.87621 0.89778 0.90557 0.70809 0.89498 0.88929 0.75446 0.86616 0.86191 0.88159 0.90556 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 7.60 71.98 0.55 -2.75 16 2 C 0.15 3.22 3.48 44.97 0.16 3.37 16 3 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.12 -1.74 5.38 30.67 0.16 -1.57 16 5 C -0.10 -1.38 4.46 30.62 0.14 -1.24 16 6 C -0.09 -1.40 2.79 -11.32 -0.03 -1.44 16 7 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 8 C 0.50 8.15 7.62 71.24 0.54 8.69 16 9 O -0.54 -11.71 16.74 21.98 0.37 -11.34 16 10 O -0.51 -6.53 13.36 -51.34 -0.69 -7.22 16 11 C 0.12 2.26 5.61 86.51 0.49 2.75 16 12 N -0.62 -15.58 2.97 -812.05 -2.41 -17.99 16 13 C 0.70 24.65 8.06 179.05 1.44 26.09 16 14 O -0.59 -24.44 9.12 -4.01 -0.04 -24.47 16 15 N -0.68 -25.03 5.24 -317.32 -1.66 -26.69 16 16 C 0.17 7.80 6.30 38.10 0.24 8.04 16 17 C -0.22 -10.48 8.72 22.58 0.20 -10.28 16 18 C -0.09 -4.12 10.02 22.20 0.22 -3.89 16 19 C -0.24 -11.96 9.79 22.75 0.22 -11.74 16 20 C 0.10 5.66 5.38 -21.31 -0.11 5.55 16 21 C -0.52 -28.08 8.97 23.46 0.21 -27.87 16 22 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 23 C 0.04 2.22 5.04 85.25 0.43 2.65 16 24 N -0.84 -44.66 12.00 21.82 0.26 -44.40 16 25 Si 0.97 38.39 29.60 68.60 2.03 40.42 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 27 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 28 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 29 C -0.19 -9.92 8.60 22.85 0.20 -9.72 16 30 H 0.04 1.39 6.64 -2.38 -0.02 1.37 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.60 6.85 -2.39 -0.02 1.58 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 36 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 37 H 0.43 2.01 9.10 -74.06 -0.67 1.33 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.09 1.74 5.70 -2.38 -0.01 1.72 16 40 H 0.41 12.49 6.34 -92.71 -0.59 11.91 16 41 H 0.12 5.34 6.13 -2.91 -0.02 5.32 16 42 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 45 H 0.09 4.88 7.21 -2.91 -0.02 4.86 16 Total: -1.00 -70.69 363.51 2.69 -68.00 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.22 Total: 37.06 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 5.05 Total: -13.37 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -3.81 Total: -89.08 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.35 Total: -43.03 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -70.69 2.69 -68.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397067089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.987 kcal (2) G-P(sol) polarization free energy of solvation -70.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds