Wall clock time and date at job start Tue Mar 31 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35962 * 116.99811 * 2 1 4 4 C 1.38539 * 120.12971 * 0.28507 * 3 2 1 5 5 C 1.38117 * 119.96439 * 180.26349 * 4 3 2 6 6 C 1.38582 * 120.43376 * 359.73611 * 5 4 3 7 7 C 1.38182 * 119.97104 * 359.97438 * 6 5 4 8 8 C 1.39036 * 119.85244 * 0.02562 * 7 6 5 9 9 N 1.39881 * 119.97874 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00217 * 51.80450 * 9 8 7 11 11 O 1.21386 * 120.00084 * 354.16982 * 10 9 8 12 12 C 1.49329 * 120.00093 * 174.44278 * 10 9 8 13 13 O 1.21363 * 119.99799 * 359.72705 * 12 10 9 14 14 N 1.34778 * 120.00249 * 179.72367 * 12 10 9 15 15 C 1.46496 * 120.00093 * 179.97438 * 14 12 10 16 16 H 1.09007 * 109.47321 * 35.00634 * 15 14 12 17 17 C 1.52994 * 109.47651 * 274.99997 * 15 14 12 18 18 C 1.50705 * 109.47141 * 155.00089 * 15 14 12 19 19 H 1.08001 * 119.99783 * 3.81205 * 18 15 14 20 20 C 1.37871 * 120.00290 * 183.80970 * 18 15 14 21 21 N 1.31518 * 119.99911 * 6.73181 * 20 18 15 22 22 Si 1.86802 * 120.00200 * 186.73322 * 20 18 15 23 23 H 1.48496 * 109.47225 * 94.98711 * 22 20 18 24 24 H 1.48501 * 109.46913 * 214.99164 * 22 20 18 25 25 H 1.48503 * 109.46869 * 334.98675 * 22 20 18 26 26 C 1.51368 * 109.78156 * 179.97438 * 7 6 5 27 27 C 1.54338 * 105.16589 * 342.81311 * 26 7 6 28 28 C 1.51405 * 130.29307 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47058 * 299.99862 * 1 2 3 31 31 H 1.09001 * 109.46702 * 59.99626 * 1 2 3 32 32 H 1.07999 * 120.02081 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.78920 * 179.71661 * 5 4 3 34 34 H 0.97001 * 119.99658 * 231.79995 * 9 8 7 35 35 H 0.96997 * 119.99782 * 0.02562 * 14 12 10 36 36 H 1.08998 * 109.47452 * 294.70206 * 17 15 14 37 37 H 1.09006 * 109.47110 * 54.69881 * 17 15 14 38 38 H 1.09002 * 109.47818 * 174.69173 * 17 15 14 39 39 H 0.97003 * 119.99935 * 180.02562 * 21 20 18 40 40 H 1.08998 * 110.29760 * 101.73804 * 26 7 6 41 41 H 1.09000 * 110.30606 * 223.88482 * 26 7 6 42 42 H 1.09003 * 110.82228 * 268.12739 * 27 26 7 43 43 H 1.08998 * 110.99296 * 144.65175 * 27 26 7 44 44 H 1.08998 * 110.30360 * 316.13484 * 28 6 5 45 45 H 1.08995 * 110.29866 * 78.28503 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3750 0.0060 5 6 1.9249 3.6039 0.0004 6 6 3.3084 3.6829 -0.0056 7 6 4.0659 2.5272 -0.0055 8 6 3.4367 1.2874 0.0000 9 7 4.2010 0.1158 0.0007 10 6 5.1768 -0.0519 0.9151 11 8 5.4637 0.8546 1.6697 12 6 5.9091 -1.3507 0.9960 13 8 5.6223 -2.2570 0.2415 14 7 6.8887 -1.5165 1.9067 15 6 7.6068 -2.7909 1.9864 16 1 7.7123 -3.2117 0.9864 17 6 6.8226 -3.7639 2.8691 18 6 8.9723 -2.5618 2.5815 19 1 9.2521 -1.5779 2.9280 20 6 9.8643 -3.6081 2.6835 21 7 9.5767 -4.7723 2.1436 22 14 11.4812 -3.3722 3.5887 23 1 11.3325 -3.8269 4.9944 24 1 12.5429 -4.1672 2.9208 25 1 11.8537 -1.9347 3.5701 26 6 5.5380 2.8796 -0.0133 27 6 5.5974 4.3562 -0.4582 28 6 4.2200 4.8917 -0.0127 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2157 2.3213 0.0102 33 1 1.3359 4.5091 0.0005 34 1 4.0286 -0.5760 -0.6570 35 1 7.1177 -0.7922 2.5099 36 1 6.7980 -3.3877 3.8918 37 1 5.8043 -3.8570 2.4916 38 1 7.3067 -4.7404 2.8526 39 1 10.2041 -5.5086 2.2157 40 1 5.9587 2.7684 0.9861 41 1 6.0741 2.2489 -0.7224 42 1 5.7111 4.4308 -1.5397 43 1 6.4021 4.8857 0.0518 44 1 3.8563 5.6355 -0.7217 45 1 4.2861 5.3214 0.9868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411399518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:51 Heat of formation + Delta-G solvation = -82.622674 kcal Electronic energy + Delta-G solvation = -28561.644084 eV Core-core repulsion = 24544.344952 eV Total energy + Delta-G solvation = -4017.299133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17057 -39.77514 -38.72412 -37.88914 -35.55142 -34.94349 -34.32790 -32.35638 -30.34676 -29.17254 -28.76934 -28.23925 -26.46849 -25.30657 -24.73644 -22.60706 -21.29416 -21.06553 -20.28306 -19.56412 -18.58288 -17.86225 -16.90773 -16.73959 -16.33650 -15.86812 -15.65472 -15.48875 -15.08652 -15.02326 -14.65007 -14.29124 -14.08186 -13.58200 -13.36043 -13.16069 -12.95237 -12.75628 -12.43586 -12.30957 -11.94839 -11.84758 -11.74063 -11.50069 -11.34778 -11.14127 -11.07661 -11.05728 -11.01861 -10.78494 -10.59619 -10.37789 -10.28078 -10.00531 -9.15672 -9.01495 -8.57887 -8.51432 -8.10500 -8.00274 -6.17379 -4.23929 1.06446 1.21484 1.94091 2.78624 3.02547 3.24945 3.32103 3.35111 3.50522 3.79103 4.16557 4.33281 4.37004 4.48011 4.70676 4.88445 4.91719 4.94077 4.95770 5.08213 5.14305 5.17181 5.21874 5.26940 5.42267 5.57780 5.71430 5.73696 5.82223 5.95066 6.01647 6.12534 6.22877 6.37522 6.50988 6.60187 6.72152 6.82122 7.00202 7.11810 7.24182 7.27702 7.46427 7.63290 7.76151 7.99335 8.06833 8.49869 8.66745 8.89460 9.42071 10.91055 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002984 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.984276 B = 9380.918436 C =10799.120481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.117 3.883 4 C -0.199 4.199 5 C -0.075 4.075 6 C -0.124 4.124 7 C -0.042 4.042 8 C 0.121 3.879 9 N -0.645 5.645 10 C 0.507 3.493 11 O -0.508 6.508 12 C 0.496 3.504 13 O -0.535 6.535 14 N -0.670 5.670 15 C 0.261 3.739 16 H 0.059 0.941 17 C -0.143 4.143 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.069 3.931 21 N -0.882 5.882 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.081 4.081 27 C -0.121 4.121 28 C -0.074 4.074 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.422 0.578 35 H 0.401 0.599 36 H 0.033 0.967 37 H 0.019 0.981 38 H 0.079 0.921 39 H 0.265 0.735 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 16.917 -5.651 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.070 3.930 4 C -0.218 4.218 5 C -0.093 4.093 6 C -0.125 4.125 7 C -0.044 4.044 8 C 0.027 3.973 9 N -0.294 5.294 10 C 0.290 3.710 11 O -0.382 6.382 12 C 0.274 3.726 13 O -0.413 6.413 14 N -0.318 5.318 15 C 0.160 3.840 16 H 0.076 0.924 17 C -0.202 4.202 18 C -0.576 4.576 19 H 0.083 0.917 20 C -0.135 4.135 21 N -0.519 5.519 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.118 4.118 27 C -0.159 4.159 28 C -0.111 4.111 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.260 0.740 35 H 0.236 0.764 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.552 16.440 -5.633 23.999 hybrid contribution 0.418 0.048 0.502 0.655 sum -16.135 16.488 -5.130 23.633 Atomic orbital electron populations 1.23073 0.78205 1.04131 1.01213 1.86120 1.21428 1.26119 1.88687 1.18775 0.90450 0.85047 0.98734 1.20913 0.99789 0.91488 1.09637 1.20368 0.93069 0.97002 0.98875 1.20424 0.93187 0.95405 1.03519 1.20354 0.96933 0.90700 0.96458 1.16434 0.86558 0.85930 1.08392 1.42942 1.33802 1.19176 1.33450 1.20891 0.80482 0.89201 0.80429 1.90684 1.64373 1.42212 1.40978 1.19700 0.82530 0.87069 0.83280 1.90728 1.65834 1.42413 1.42359 1.46455 1.32891 1.19052 1.33444 1.18960 0.89165 0.77845 0.98047 0.92359 1.22032 0.97229 1.02356 0.98534 1.21178 0.97798 0.96318 1.42279 0.91725 1.24879 0.98462 0.95051 0.95093 1.69963 1.36831 1.02458 1.42647 0.86423 0.82573 0.78331 0.79754 1.20493 1.21081 1.19700 1.21235 0.91269 0.95612 1.03704 1.22324 0.96816 0.95504 1.01224 1.20970 0.93349 0.94913 1.01875 0.88072 0.92636 0.92648 0.84915 0.85823 0.74022 0.76421 0.94768 0.96218 0.90230 0.92496 0.87691 0.91137 0.91157 0.90407 0.90925 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.31 -3.84 10.24 -19.62 -0.20 -4.04 16 3 C 0.12 1.51 6.70 -39.09 -0.26 1.24 16 4 C -0.20 -2.05 9.03 -39.51 -0.36 -2.41 16 5 C -0.07 -0.74 10.03 -39.50 -0.40 -1.14 16 6 C -0.12 -1.42 6.14 -104.17 -0.64 -2.06 16 7 C -0.04 -0.58 5.43 -104.02 -0.56 -1.14 16 8 C 0.12 1.76 5.97 -83.51 -0.50 1.27 16 9 N -0.64 -10.16 5.01 -10.16 -0.05 -10.21 16 10 C 0.51 9.15 7.40 -11.64 -0.09 9.06 16 11 O -0.51 -9.47 12.92 5.47 0.07 -9.40 16 12 C 0.50 10.33 7.85 -11.64 -0.09 10.24 16 13 O -0.53 -12.31 16.15 5.49 0.09 -12.22 16 14 N -0.67 -14.65 5.06 -55.40 -0.28 -14.93 16 15 C 0.26 6.63 2.44 -69.08 -0.17 6.47 16 16 H 0.06 1.68 7.57 -51.93 -0.39 1.29 16 17 C -0.14 -3.50 9.24 37.15 0.34 -3.16 16 18 C -0.54 -14.30 8.68 -34.44 -0.30 -14.59 16 19 H 0.06 1.66 7.73 -52.49 -0.41 1.26 16 20 C 0.07 1.85 5.26 -17.82 -0.09 1.76 16 21 N -0.88 -24.75 11.95 55.43 0.66 -24.09 16 22 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 C -0.08 -1.06 5.21 -26.85 -0.14 -1.20 16 27 C -0.12 -1.17 7.08 -25.33 -0.18 -1.35 16 28 C -0.07 -0.67 6.77 -26.83 -0.18 -0.86 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 31 H 0.05 0.33 7.68 -51.93 -0.40 -0.07 16 32 H 0.13 0.99 6.31 -52.49 -0.33 0.66 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.42 6.32 8.31 -40.82 -0.34 5.98 16 35 H 0.40 8.17 8.00 -40.82 -0.33 7.84 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 2.08 6.79 -51.93 -0.35 1.73 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.11 1.55 6.38 -51.93 -0.33 1.22 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -31.16 373.16 -7.95 -39.11 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.21 Total: 11.18 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.62 Total: 3.35 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.33 Total: -49.24 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.04 Total: -25.66 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.16 -7.95 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411399518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.515 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds