Wall clock time and date at job start Tue Mar 31 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35962 * 116.99811 * 2 1 4 4 C 1.38539 * 120.12971 * 0.28507 * 3 2 1 5 5 C 1.38117 * 119.96439 * 180.26349 * 4 3 2 6 6 C 1.38582 * 120.43376 * 359.73611 * 5 4 3 7 7 C 1.38182 * 119.97104 * 359.97438 * 6 5 4 8 8 C 1.39036 * 119.85244 * 0.02562 * 7 6 5 9 9 N 1.39881 * 119.97874 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00217 * 51.80450 * 9 8 7 11 11 O 1.21386 * 120.00084 * 354.16982 * 10 9 8 12 12 C 1.49329 * 120.00093 * 174.44278 * 10 9 8 13 13 O 1.21363 * 119.99799 * 359.72705 * 12 10 9 14 14 N 1.34778 * 120.00249 * 179.72367 * 12 10 9 15 15 C 1.46496 * 120.00093 * 179.97438 * 14 12 10 16 16 H 1.09007 * 109.47321 * 35.00634 * 15 14 12 17 17 C 1.52994 * 109.47651 * 274.99997 * 15 14 12 18 18 C 1.50705 * 109.47141 * 155.00089 * 15 14 12 19 19 H 1.08001 * 119.99783 * 3.81205 * 18 15 14 20 20 C 1.37871 * 120.00290 * 183.80970 * 18 15 14 21 21 N 1.31518 * 119.99911 * 6.73181 * 20 18 15 22 22 Si 1.86802 * 120.00200 * 186.73322 * 20 18 15 23 23 H 1.48496 * 109.47225 * 94.98711 * 22 20 18 24 24 H 1.48501 * 109.46913 * 214.99164 * 22 20 18 25 25 H 1.48503 * 109.46869 * 334.98675 * 22 20 18 26 26 C 1.51368 * 109.78156 * 179.97438 * 7 6 5 27 27 C 1.54338 * 105.16589 * 342.81311 * 26 7 6 28 28 C 1.51405 * 130.29307 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47058 * 299.99862 * 1 2 3 31 31 H 1.09001 * 109.46702 * 59.99626 * 1 2 3 32 32 H 1.07999 * 120.02081 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.78920 * 179.71661 * 5 4 3 34 34 H 0.97001 * 119.99658 * 231.79995 * 9 8 7 35 35 H 0.96997 * 119.99782 * 0.02562 * 14 12 10 36 36 H 1.08998 * 109.47452 * 294.70206 * 17 15 14 37 37 H 1.09006 * 109.47110 * 54.69881 * 17 15 14 38 38 H 1.09002 * 109.47818 * 174.69173 * 17 15 14 39 39 H 0.97003 * 119.99935 * 180.02562 * 21 20 18 40 40 H 1.08998 * 110.29760 * 101.73804 * 26 7 6 41 41 H 1.09000 * 110.30606 * 223.88482 * 26 7 6 42 42 H 1.09003 * 110.82228 * 268.12739 * 27 26 7 43 43 H 1.08998 * 110.99296 * 144.65175 * 27 26 7 44 44 H 1.08998 * 110.30360 * 316.13484 * 28 6 5 45 45 H 1.08995 * 110.29866 * 78.28503 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3750 0.0060 5 6 1.9249 3.6039 0.0004 6 6 3.3084 3.6829 -0.0056 7 6 4.0659 2.5272 -0.0055 8 6 3.4367 1.2874 0.0000 9 7 4.2010 0.1158 0.0007 10 6 5.1768 -0.0519 0.9151 11 8 5.4637 0.8546 1.6697 12 6 5.9091 -1.3507 0.9960 13 8 5.6223 -2.2570 0.2415 14 7 6.8887 -1.5165 1.9067 15 6 7.6068 -2.7909 1.9864 16 1 7.7123 -3.2117 0.9864 17 6 6.8226 -3.7639 2.8691 18 6 8.9723 -2.5618 2.5815 19 1 9.2521 -1.5779 2.9280 20 6 9.8643 -3.6081 2.6835 21 7 9.5767 -4.7723 2.1436 22 14 11.4812 -3.3722 3.5887 23 1 11.3325 -3.8269 4.9944 24 1 12.5429 -4.1672 2.9208 25 1 11.8537 -1.9347 3.5701 26 6 5.5380 2.8796 -0.0133 27 6 5.5974 4.3562 -0.4582 28 6 4.2200 4.8917 -0.0127 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2157 2.3213 0.0102 33 1 1.3359 4.5091 0.0005 34 1 4.0286 -0.5760 -0.6570 35 1 7.1177 -0.7922 2.5099 36 1 6.7980 -3.3877 3.8918 37 1 5.8043 -3.8570 2.4916 38 1 7.3067 -4.7404 2.8526 39 1 10.2041 -5.5086 2.2157 40 1 5.9587 2.7684 0.9861 41 1 6.0741 2.2489 -0.7224 42 1 5.7111 4.4308 -1.5397 43 1 6.4021 4.8857 0.0518 44 1 3.8563 5.6355 -0.7217 45 1 4.2861 5.3214 0.9868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411399518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:50 Heat of formation + Delta-G solvation = -103.287731 kcal Electronic energy + Delta-G solvation = -28562.540189 eV Core-core repulsion = 24544.344952 eV Total energy + Delta-G solvation = -4018.195237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.28875 -41.13165 -39.71591 -39.31041 -37.09552 -36.34104 -35.40153 -34.32413 -31.44535 -31.03833 -29.57862 -29.00384 -27.39755 -27.28609 -26.17708 -23.74657 -22.66895 -22.04464 -21.53135 -21.09742 -20.12834 -18.83752 -18.20183 -18.06765 -17.65361 -17.24379 -17.02049 -16.62466 -16.55887 -16.27226 -15.89846 -15.51520 -15.17686 -14.91637 -14.83774 -14.44108 -14.25374 -13.85609 -13.81708 -13.59223 -13.08002 -13.05557 -13.03545 -12.85587 -12.72666 -12.67534 -12.44082 -12.38706 -12.18134 -12.14296 -12.01622 -11.92302 -11.38289 -11.20180 -11.16483 -10.66147 -10.61484 -10.01262 -9.49666 -8.91998 -8.23491 -6.38117 0.03467 0.33161 0.49321 1.36377 1.44952 1.46227 1.57110 2.14426 2.23395 2.39076 2.64799 2.75929 3.09175 3.48243 3.55102 3.65241 3.99566 4.09751 4.17240 4.26545 4.29925 4.38274 4.40654 4.58524 4.66995 4.73603 4.78219 4.81165 4.89690 4.95378 4.96861 4.99467 5.10902 5.18017 5.23149 5.27633 5.31629 5.40048 5.42769 5.56826 5.62130 5.69748 5.75084 5.93877 5.98320 6.35161 6.54898 6.64981 6.82642 7.06520 7.33387 8.85527 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002984 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.984276 B = 9380.918436 C =10799.120481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.108 3.892 4 C -0.193 4.193 5 C -0.065 4.065 6 C -0.130 4.130 7 C -0.066 4.066 8 C 0.081 3.919 9 N -0.631 5.631 10 C 0.514 3.486 11 O -0.516 6.516 12 C 0.495 3.505 13 O -0.560 6.560 14 N -0.669 5.669 15 C 0.267 3.733 16 H 0.016 0.984 17 C -0.130 4.130 18 C -0.553 4.553 19 H 0.071 0.929 20 C 0.021 3.979 21 N -0.915 5.915 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.264 1.264 26 C -0.085 4.085 27 C -0.116 4.116 28 C -0.070 4.070 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.422 0.578 35 H 0.410 0.590 36 H 0.045 0.955 37 H 0.022 0.978 38 H 0.059 0.941 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.268 19.735 -5.290 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.061 3.939 4 C -0.212 4.212 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.068 4.068 8 C -0.012 4.012 9 N -0.279 5.279 10 C 0.296 3.704 11 O -0.391 6.391 12 C 0.275 3.725 13 O -0.440 6.440 14 N -0.319 5.319 15 C 0.165 3.835 16 H 0.034 0.966 17 C -0.189 4.189 18 C -0.591 4.591 19 H 0.089 0.911 20 C -0.180 4.180 21 N -0.552 5.552 22 Si 0.796 3.204 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.189 1.189 26 C -0.122 4.122 27 C -0.153 4.153 28 C -0.106 4.106 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.260 0.740 35 H 0.245 0.755 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.081 19.294 -5.281 26.964 hybrid contribution 0.734 -0.816 0.309 1.141 sum -17.346 18.477 -4.972 25.827 Atomic orbital electron populations 1.23383 0.75897 1.05501 1.02729 1.86087 1.23930 1.26388 1.88688 1.18956 0.89986 0.86195 0.98772 1.21318 1.01288 0.90601 1.07990 1.20832 0.92741 0.98266 0.96506 1.20817 0.94107 0.95318 1.02862 1.20575 0.97426 0.91353 0.97453 1.16838 0.87520 0.85440 1.11430 1.42786 1.32971 1.19860 1.32295 1.20177 0.81158 0.87739 0.81296 1.90685 1.64927 1.41866 1.41666 1.20192 0.81992 0.88036 0.82235 1.90703 1.66474 1.43737 1.43083 1.46228 1.33163 1.18271 1.34212 1.18623 0.89845 0.79259 0.95790 0.96564 1.21861 0.96900 1.01140 0.98973 1.21471 0.98410 0.96798 1.42449 0.91064 1.25752 1.02020 0.94647 0.95612 1.70090 1.38197 1.03304 1.43622 0.85337 0.78037 0.78529 0.78493 1.19691 1.20921 1.18862 1.21211 0.91122 0.97870 1.01955 1.22339 0.98034 0.93024 1.01898 1.21020 0.92129 0.94452 1.03030 0.87006 0.91393 0.90684 0.81714 0.82145 0.74019 0.75450 0.93617 0.95912 0.92172 0.92312 0.90026 0.92950 0.90254 0.89244 0.88310 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.82 113.37 1.11 1.36 16 2 O -0.34 -8.09 10.24 -93.12 -0.95 -9.05 16 3 C 0.11 2.66 6.70 22.59 0.15 2.81 16 4 C -0.19 -3.39 9.03 22.31 0.20 -3.19 16 5 C -0.07 -1.06 10.03 22.32 0.22 -0.84 16 6 C -0.13 -2.67 6.14 -19.57 -0.12 -2.79 16 7 C -0.07 -1.79 5.43 -19.47 -0.11 -1.90 16 8 C 0.08 2.37 5.97 38.29 0.23 2.60 16 9 N -0.63 -20.72 5.01 -304.40 -1.53 -22.24 16 10 C 0.51 19.32 7.40 87.23 0.65 19.97 16 11 O -0.52 -19.86 12.92 -3.36 -0.04 -19.91 16 12 C 0.50 21.57 7.85 87.23 0.68 22.26 16 13 O -0.56 -27.06 16.15 -3.29 -0.05 -27.11 16 14 N -0.67 -30.33 5.06 -447.55 -2.27 -32.60 16 15 C 0.27 14.09 2.44 44.25 0.11 14.20 16 16 H 0.02 1.00 7.57 -2.38 -0.02 0.98 16 17 C -0.13 -6.55 9.24 71.98 0.66 -5.88 16 18 C -0.55 -29.89 8.68 25.60 0.22 -29.67 16 19 H 0.07 3.67 7.73 -2.91 -0.02 3.65 16 20 C 0.02 1.12 5.26 84.65 0.45 1.56 16 21 N -0.91 -52.43 11.95 21.45 0.26 -52.17 16 22 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 C -0.08 -2.24 5.21 30.51 0.16 -2.08 16 27 C -0.12 -2.06 7.08 31.50 0.22 -1.84 16 28 C -0.07 -1.06 6.77 30.53 0.21 -0.86 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 31 H 0.07 0.69 7.68 -2.39 -0.02 0.67 16 32 H 0.17 1.74 6.31 -2.91 -0.02 1.73 16 33 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.42 13.37 8.31 -92.71 -0.77 12.60 16 35 H 0.41 17.11 8.00 -92.71 -0.74 16.37 16 36 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 3.24 6.79 -2.39 -0.02 3.23 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.08 2.51 6.38 -2.39 -0.02 2.50 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.51 373.16 2.03 -67.49 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.47 Total: 35.46 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 5.05 Total: 15.71 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.54 Total: -107.01 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -1.05 Total: -56.06 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -69.51 2.03 -67.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411399518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.800 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds