Wall clock time and date at job start Tue Mar 31 2020 17:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49685 * 2 1 4 4 C 1.53047 * 109.49634 * 239.90739 * 2 1 3 5 5 C 1.53046 * 109.53448 * 178.68180 * 4 2 1 6 6 H 1.08995 * 109.50010 * 301.41567 * 5 4 2 7 7 O 1.42894 * 109.49426 * 181.34405 * 5 4 2 8 8 C 1.52768 * 109.38323 * 61.24244 * 5 4 2 9 9 N 1.46929 * 109.00310 * 305.58631 * 8 5 4 10 10 C 1.34776 * 120.62754 * 233.57971 * 9 8 5 11 11 O 1.21363 * 120.00177 * 186.12036 * 10 9 8 12 12 C 1.49360 * 119.99947 * 6.13025 * 10 9 8 13 13 O 1.21375 * 120.00125 * 6.20527 * 12 10 9 14 14 N 1.34782 * 119.99963 * 186.21303 * 12 10 9 15 15 C 1.39735 * 119.99683 * 184.36537 * 14 12 10 16 16 C 1.39341 * 119.95147 * 144.77574 * 15 14 12 17 17 C 1.38476 * 120.42447 * 179.97438 * 16 15 14 18 18 C 1.37697 * 120.32741 * 359.97438 * 17 16 15 19 19 C 1.40749 * 119.89549 * 359.97438 * 18 17 16 20 20 C 1.41408 * 120.20830 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99918 * 150.73614 * 20 19 18 22 22 C 1.39929 * 119.99922 * 330.74714 * 20 19 18 23 23 N 1.30833 * 120.00414 * 169.89519 * 22 20 19 24 24 Si 1.86800 * 120.00093 * 349.88860 * 22 20 19 25 25 H 1.48507 * 109.46873 * 93.53468 * 24 22 20 26 26 H 1.48502 * 109.47368 * 213.53213 * 24 22 20 27 27 H 1.48496 * 109.47100 * 333.53647 * 24 22 20 28 28 C 1.38302 * 119.95677 * 324.49705 * 15 14 12 29 29 C 1.46921 * 118.74144 * 53.31249 * 9 8 5 30 30 H 1.08994 * 109.47467 * 299.93455 * 1 2 3 31 31 H 1.09000 * 109.46830 * 59.93485 * 1 2 3 32 32 H 1.08996 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.45763 * 298.70106 * 4 2 1 34 34 H 1.08998 * 109.46124 * 58.67714 * 4 2 1 35 35 H 0.96700 * 113.99867 * 179.97438 * 7 5 4 36 36 H 1.08994 * 109.50938 * 185.70479 * 8 5 4 37 37 H 1.08997 * 109.43313 * 65.41536 * 8 5 4 38 38 H 0.97003 * 119.99689 * 4.63464 * 14 12 10 39 39 H 1.08001 * 119.79200 * 0.02562 * 16 15 14 40 40 H 1.08005 * 119.83550 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.05162 * 180.02562 * 18 17 16 42 42 H 0.96990 * 120.00598 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.16052 * 0.02562 * 28 15 14 44 44 H 1.08999 * 109.58651 * 66.43006 * 29 9 8 45 45 H 1.09001 * 109.58676 * 186.85526 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2483 5 6 3.5709 -0.6952 -1.2659 6 1 3.9159 0.3386 -1.2541 7 8 4.0462 -1.3434 -2.4474 8 6 4.1056 -1.4216 -0.0329 9 7 3.5046 -0.8288 1.1697 10 6 4.2811 -0.3851 2.1780 11 8 3.7733 -0.0004 3.2109 12 6 5.7666 -0.3668 2.0240 13 8 6.2694 -0.6437 0.9546 14 7 6.5489 -0.0428 3.0727 15 6 7.9321 0.0635 2.9060 16 6 8.6475 1.0218 3.6211 17 6 10.0186 1.1354 3.4638 18 6 10.6906 0.3013 2.5985 19 6 9.9817 -0.6723 1.8701 20 6 10.6651 -1.5320 0.9793 21 1 10.2850 -2.5247 0.7886 22 6 11.8339 -1.0964 0.3450 23 7 12.5732 -1.9467 -0.3199 24 14 12.3386 0.6992 0.4475 25 1 13.2728 0.8864 1.5867 26 1 13.0116 1.0971 -0.8150 27 1 11.1329 1.5413 0.6526 28 6 8.5902 -0.7864 2.0357 29 6 2.0413 -0.7236 1.2497 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7576 -1.2349 34 1 1.6583 -0.2248 -2.1389 35 1 5.0098 -1.3624 -2.5250 36 1 5.1895 -1.3160 0.0103 37 1 3.8412 -2.4774 -0.0909 38 1 6.1519 0.1127 3.9441 39 1 8.1294 1.6798 4.3031 40 1 10.5637 1.8813 4.0233 41 1 11.7601 0.3935 2.4796 42 1 13.3831 -1.6448 -0.7599 43 1 8.0374 -1.5323 1.4839 44 1 1.6053 -1.7214 1.2984 45 1 1.7638 -0.1575 2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411844681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:50 Heat of formation + Delta-G solvation = -79.032187 kcal Electronic energy + Delta-G solvation = -28733.990930 eV Core-core repulsion = 24716.847492 eV Total energy + Delta-G solvation = -4017.143437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18251 -39.47065 -38.26329 -37.55904 -36.11940 -35.03683 -33.85574 -33.23171 -30.48412 -30.42696 -29.17468 -27.44427 -26.37979 -25.32007 -23.87636 -22.29207 -21.61096 -20.98913 -20.39656 -19.65056 -18.07125 -17.53104 -17.32996 -16.84512 -16.14017 -16.01489 -15.65021 -15.47256 -15.24405 -14.87848 -14.68995 -14.46786 -14.00588 -13.64240 -13.60905 -13.21390 -12.93448 -12.84660 -12.67640 -12.48292 -12.25773 -12.13692 -12.08311 -11.74563 -11.50530 -11.23717 -11.07431 -11.02674 -10.86880 -10.79000 -10.69033 -10.32169 -10.11370 -9.74048 -9.49504 -9.21168 -8.92004 -8.84299 -7.77723 -7.32833 -6.96558 -4.56029 1.29988 2.22685 2.49183 2.55399 3.07173 3.20425 3.25244 3.30304 3.44541 3.94874 3.95709 4.35363 4.44955 4.46194 4.55316 4.68998 4.77661 4.97861 5.16312 5.22236 5.28927 5.34329 5.37453 5.50778 5.56017 5.68104 5.74322 5.78978 5.87164 5.90394 6.03876 6.07771 6.10459 6.27777 6.48278 6.59603 6.68279 6.91017 7.06826 7.09516 7.36911 7.47282 7.51861 7.58720 7.78208 7.81086 7.88262 8.22655 8.30907 8.55251 8.73690 10.05573 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.003230 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.904917 B = 8665.541619 C = 9894.984337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.111 4.111 5 C 0.098 3.902 6 H 0.058 0.942 7 O -0.564 6.564 8 C 0.012 3.988 9 N -0.577 5.577 10 C 0.513 3.487 11 O -0.523 6.523 12 C 0.501 3.499 13 O -0.486 6.486 14 N -0.629 5.629 15 C 0.150 3.850 16 C -0.257 4.257 17 C -0.063 4.063 18 C -0.244 4.244 19 C 0.100 3.900 20 C -0.435 4.435 21 H 0.092 0.908 22 C 0.080 3.920 23 N -0.811 5.811 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.294 1.294 27 H -0.239 1.239 28 C -0.192 4.192 29 C 0.110 3.890 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.387 0.613 36 H 0.166 0.834 37 H 0.072 0.928 38 H 0.414 0.586 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.286 0.714 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 3.469 0.512 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.096 0.904 4 C -0.148 4.148 5 C 0.038 3.962 6 H 0.076 0.924 7 O -0.370 6.370 8 C -0.109 4.109 9 N -0.311 5.311 10 C 0.296 3.704 11 O -0.399 6.399 12 C 0.283 3.717 13 O -0.363 6.363 14 N -0.273 5.273 15 C 0.059 3.941 16 C -0.278 4.278 17 C -0.082 4.082 18 C -0.263 4.263 19 C 0.096 3.904 20 C -0.463 4.463 21 H 0.110 0.890 22 C -0.138 4.138 23 N -0.435 5.435 24 Si 0.745 3.255 25 H -0.198 1.198 26 H -0.223 1.223 27 H -0.163 1.163 28 C -0.213 4.213 29 C -0.012 4.012 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.181 0.819 37 H 0.090 0.910 38 H 0.251 0.749 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.092 0.908 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.424 3.281 0.013 18.714 hybrid contribution 0.696 0.812 0.454 1.162 sum -17.729 4.093 0.467 18.201 Atomic orbital electron populations 1.21733 0.93608 1.02350 1.02344 1.21469 0.96470 1.00210 0.94186 0.90423 1.21598 0.93720 1.01682 0.97835 1.21900 0.94417 0.95531 0.84347 0.92402 1.86445 1.27842 1.81152 1.41564 1.24006 1.06528 0.97276 0.83084 1.47797 1.06545 1.58742 1.18044 1.20107 0.87986 0.78561 0.83733 1.90739 1.75141 1.46932 1.27124 1.20070 0.87462 0.79241 0.84888 1.90329 1.73836 1.46286 1.25833 1.43140 1.06473 1.65769 1.11914 1.17531 0.79379 0.97212 0.99998 1.20088 0.94449 1.03834 1.09441 1.20359 0.93296 0.97379 0.97176 1.21010 0.98250 1.03592 1.03487 1.17619 0.90955 0.90874 0.90935 1.19511 1.05030 1.01455 1.20343 0.89038 1.26183 0.94272 1.00497 0.92864 1.69633 1.11896 1.36805 1.25184 0.86269 0.80084 0.82851 0.76336 1.19849 1.22254 1.16284 1.21075 0.93707 1.02449 1.04117 1.21864 0.78690 1.01451 0.99244 0.92095 0.92004 0.92227 0.90981 0.90895 0.76461 0.81857 0.90965 0.74940 0.88288 0.88201 0.88285 0.90346 0.86228 0.90761 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.20 37.16 0.34 -0.57 16 2 C -0.10 -0.88 2.87 -90.50 -0.26 -1.14 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.04 4.82 -26.68 -0.13 -1.17 16 5 C 0.10 1.10 3.60 -26.83 -0.10 1.00 16 6 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 7 O -0.56 -6.56 13.32 -35.23 -0.47 -7.03 16 8 C 0.01 0.15 5.88 -3.93 -0.02 0.13 16 9 N -0.58 -7.15 2.98 -173.57 -0.52 -7.67 16 10 C 0.51 7.52 7.74 -11.63 -0.09 7.43 16 11 O -0.52 -8.21 15.95 5.49 0.09 -8.13 16 12 C 0.50 8.32 7.62 -11.63 -0.09 8.23 16 13 O -0.49 -8.91 10.54 5.47 0.06 -8.85 16 14 N -0.63 -10.60 5.31 -10.34 -0.05 -10.66 16 15 C 0.15 3.06 6.28 -83.82 -0.53 2.53 16 16 C -0.26 -5.05 9.97 -39.08 -0.39 -5.44 16 17 C -0.06 -1.31 10.02 -39.69 -0.40 -1.70 16 18 C -0.24 -5.70 6.84 -38.83 -0.27 -5.97 16 19 C 0.10 2.49 5.21 -106.85 -0.56 1.93 16 20 C -0.43 -11.60 9.63 -37.74 -0.36 -11.97 16 21 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 22 C 0.08 2.08 5.49 -17.34 -0.10 1.99 16 23 N -0.81 -21.41 13.93 55.55 0.77 -20.63 16 24 Si 0.92 20.63 24.33 -169.99 -4.14 16.49 16 25 H -0.27 -5.89 6.76 56.52 0.38 -5.51 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.24 -5.52 6.37 56.52 0.36 -5.16 16 28 C -0.19 -4.44 8.43 -38.67 -0.33 -4.77 16 29 C 0.11 1.08 5.70 -3.71 -0.02 1.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.39 3.53 9.08 45.56 0.41 3.94 16 36 H 0.17 2.35 3.75 -56.91 -0.21 2.14 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.41 5.96 8.33 -40.82 -0.34 5.62 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.10 2.30 4.01 -52.49 -0.21 2.09 16 42 H 0.29 6.84 8.30 -40.82 -0.34 6.51 16 43 H 0.12 2.79 6.25 -52.49 -0.33 2.46 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.10 1.00 7.05 -51.93 -0.37 0.63 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -29.16 360.11 -7.43 -36.59 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.31 Total: 12.89 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.29 Total: -8.43 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.20 Total: -38.96 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.32 Total: -24.01 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.14 Total: 16.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.16 -7.43 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411844681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.445 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds