Wall clock time and date at job start Tue Mar 31 2020 17:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49685 * 2 1 4 4 C 1.53047 * 109.49634 * 239.90739 * 2 1 3 5 5 C 1.53046 * 109.53448 * 178.68180 * 4 2 1 6 6 H 1.08995 * 109.50010 * 301.41567 * 5 4 2 7 7 O 1.42894 * 109.49426 * 181.34405 * 5 4 2 8 8 C 1.52768 * 109.38323 * 61.24244 * 5 4 2 9 9 N 1.46929 * 109.00310 * 305.58631 * 8 5 4 10 10 C 1.34776 * 120.62754 * 233.57971 * 9 8 5 11 11 O 1.21363 * 120.00177 * 186.12036 * 10 9 8 12 12 C 1.49360 * 119.99947 * 6.13025 * 10 9 8 13 13 O 1.21375 * 120.00125 * 6.20527 * 12 10 9 14 14 N 1.34782 * 119.99963 * 186.21303 * 12 10 9 15 15 C 1.39735 * 119.99683 * 184.36537 * 14 12 10 16 16 C 1.39341 * 119.95147 * 144.77574 * 15 14 12 17 17 C 1.38476 * 120.42447 * 179.97438 * 16 15 14 18 18 C 1.37697 * 120.32741 * 359.97438 * 17 16 15 19 19 C 1.40749 * 119.89549 * 359.97438 * 18 17 16 20 20 C 1.41408 * 120.20830 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99918 * 150.73614 * 20 19 18 22 22 C 1.39929 * 119.99922 * 330.74714 * 20 19 18 23 23 N 1.30833 * 120.00414 * 169.89519 * 22 20 19 24 24 Si 1.86800 * 120.00093 * 349.88860 * 22 20 19 25 25 H 1.48507 * 109.46873 * 93.53468 * 24 22 20 26 26 H 1.48502 * 109.47368 * 213.53213 * 24 22 20 27 27 H 1.48496 * 109.47100 * 333.53647 * 24 22 20 28 28 C 1.38302 * 119.95677 * 324.49705 * 15 14 12 29 29 C 1.46921 * 118.74144 * 53.31249 * 9 8 5 30 30 H 1.08994 * 109.47467 * 299.93455 * 1 2 3 31 31 H 1.09000 * 109.46830 * 59.93485 * 1 2 3 32 32 H 1.08996 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.45763 * 298.70106 * 4 2 1 34 34 H 1.08998 * 109.46124 * 58.67714 * 4 2 1 35 35 H 0.96700 * 113.99867 * 179.97438 * 7 5 4 36 36 H 1.08994 * 109.50938 * 185.70479 * 8 5 4 37 37 H 1.08997 * 109.43313 * 65.41536 * 8 5 4 38 38 H 0.97003 * 119.99689 * 4.63464 * 14 12 10 39 39 H 1.08001 * 119.79200 * 0.02562 * 16 15 14 40 40 H 1.08005 * 119.83550 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.05162 * 180.02562 * 18 17 16 42 42 H 0.96990 * 120.00598 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.16052 * 0.02562 * 28 15 14 44 44 H 1.08999 * 109.58651 * 66.43006 * 29 9 8 45 45 H 1.09001 * 109.58676 * 186.85526 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2483 5 6 3.5709 -0.6952 -1.2659 6 1 3.9159 0.3386 -1.2541 7 8 4.0462 -1.3434 -2.4474 8 6 4.1056 -1.4216 -0.0329 9 7 3.5046 -0.8288 1.1697 10 6 4.2811 -0.3851 2.1780 11 8 3.7733 -0.0004 3.2109 12 6 5.7666 -0.3668 2.0240 13 8 6.2694 -0.6437 0.9546 14 7 6.5489 -0.0428 3.0727 15 6 7.9321 0.0635 2.9060 16 6 8.6475 1.0218 3.6211 17 6 10.0186 1.1354 3.4638 18 6 10.6906 0.3013 2.5985 19 6 9.9817 -0.6723 1.8701 20 6 10.6651 -1.5320 0.9793 21 1 10.2850 -2.5247 0.7886 22 6 11.8339 -1.0964 0.3450 23 7 12.5732 -1.9467 -0.3199 24 14 12.3386 0.6992 0.4475 25 1 13.2728 0.8864 1.5867 26 1 13.0116 1.0971 -0.8150 27 1 11.1329 1.5413 0.6526 28 6 8.5902 -0.7864 2.0357 29 6 2.0413 -0.7236 1.2497 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7576 -1.2349 34 1 1.6583 -0.2248 -2.1389 35 1 5.0098 -1.3624 -2.5250 36 1 5.1895 -1.3160 0.0103 37 1 3.8412 -2.4774 -0.0909 38 1 6.1519 0.1127 3.9441 39 1 8.1294 1.6798 4.3031 40 1 10.5637 1.8813 4.0233 41 1 11.7601 0.3935 2.4796 42 1 13.3831 -1.6448 -0.7599 43 1 8.0374 -1.5323 1.4839 44 1 1.6053 -1.7214 1.2984 45 1 1.7638 -0.1575 2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411844681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:49 Heat of formation + Delta-G solvation = -100.440760 kcal Electronic energy + Delta-G solvation = -28734.919275 eV Core-core repulsion = 24716.847492 eV Total energy + Delta-G solvation = -4018.071783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41503 -40.72538 -39.39483 -39.11679 -37.06456 -36.48995 -35.20781 -34.67516 -32.22229 -31.36831 -30.79648 -28.29400 -27.43241 -27.10837 -25.13386 -23.15026 -23.06368 -22.69939 -21.51249 -20.77557 -19.68923 -18.86551 -18.33864 -17.97832 -17.85337 -17.31138 -16.95756 -16.72942 -16.41513 -16.22809 -15.92528 -15.66950 -15.28039 -15.14305 -14.65062 -14.47458 -14.37152 -14.16713 -13.91870 -13.86413 -13.44511 -13.26869 -12.92264 -12.88146 -12.83118 -12.63468 -12.58638 -12.38094 -11.96088 -11.89589 -11.83065 -11.68317 -11.57894 -11.25034 -11.17829 -10.91208 -10.17393 -9.90743 -9.56404 -8.99626 -8.87546 -6.54366 -0.01375 0.75911 0.80169 1.12512 1.26701 1.42889 1.50356 1.95308 2.12543 2.25432 2.60179 3.01765 3.23811 3.47931 3.71067 3.73508 3.83253 3.95826 4.11771 4.28637 4.39161 4.45195 4.47978 4.53490 4.56154 4.61331 4.65572 4.75810 4.85570 4.88622 4.95891 4.99511 5.02289 5.12421 5.15423 5.24264 5.31194 5.39739 5.51979 5.64367 5.73702 5.84996 5.89979 6.13187 6.18309 6.33422 6.56082 6.69594 6.70381 6.77404 6.87448 8.20955 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.003230 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.904917 B = 8665.541619 C = 9894.984337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.107 4.107 5 C 0.099 3.901 6 H 0.049 0.951 7 O -0.574 6.574 8 C 0.016 3.984 9 N -0.569 5.569 10 C 0.519 3.481 11 O -0.533 6.533 12 C 0.498 3.502 13 O -0.507 6.507 14 N -0.624 5.624 15 C 0.157 3.843 16 C -0.233 4.233 17 C -0.064 4.064 18 C -0.256 4.256 19 C 0.082 3.918 20 C -0.476 4.476 21 H 0.051 0.949 22 C 0.041 3.959 23 N -0.857 5.857 24 Si 0.973 3.027 25 H -0.254 1.254 26 H -0.285 1.285 27 H -0.246 1.246 28 C -0.211 4.211 29 C 0.105 3.895 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.395 0.605 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.428 0.572 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.293 0.707 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.263 5.981 2.110 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.145 4.145 5 C 0.040 3.960 6 H 0.067 0.933 7 O -0.381 6.381 8 C -0.106 4.106 9 N -0.302 5.302 10 C 0.301 3.699 11 O -0.410 6.410 12 C 0.281 3.719 13 O -0.384 6.384 14 N -0.270 5.270 15 C 0.064 3.936 16 C -0.254 4.254 17 C -0.082 4.082 18 C -0.275 4.275 19 C 0.078 3.922 20 C -0.506 4.506 21 H 0.069 0.931 22 C -0.172 4.172 23 N -0.483 5.483 24 Si 0.797 3.203 25 H -0.179 1.179 26 H -0.213 1.213 27 H -0.170 1.170 28 C -0.233 4.233 29 C -0.015 4.015 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.244 0.756 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.268 0.732 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.680 5.781 1.618 21.534 hybrid contribution 1.146 0.037 0.062 1.148 sum -19.534 5.818 1.680 20.451 Atomic orbital electron populations 1.21709 0.91556 1.03188 1.03094 1.21429 0.97998 0.99321 0.92839 0.91144 1.21608 0.92019 1.02224 0.98603 1.21920 0.95802 0.94690 0.83632 0.93334 1.86427 1.28779 1.81179 1.41727 1.23855 1.05251 0.97868 0.83581 1.47887 1.07668 1.57421 1.17264 1.19648 0.86871 0.79166 0.84239 1.90737 1.74867 1.47949 1.27493 1.20575 0.88592 0.78265 0.84430 1.90387 1.74723 1.46576 1.26701 1.43054 1.05130 1.65950 1.12889 1.17592 0.81045 0.96219 0.98766 1.20638 0.94342 1.02451 1.07975 1.20835 0.93941 0.97243 0.96184 1.21169 0.98559 1.03753 1.04047 1.17732 0.91768 0.91531 0.91125 1.19458 1.06938 1.00835 1.23330 0.93058 1.26883 0.93928 1.04124 0.92261 1.69675 1.13013 1.38473 1.27176 0.85421 0.79634 0.77991 0.77249 1.17918 1.21283 1.17025 1.21052 0.93389 1.03336 1.05491 1.22135 0.76658 1.02729 1.00004 0.91369 0.91286 0.91359 0.90502 0.90324 0.75564 0.84028 0.90227 0.73229 0.84079 0.84091 0.88257 0.89614 0.87823 0.89015 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 71.98 0.66 -0.68 16 2 C -0.10 -1.41 2.87 -10.71 -0.03 -1.44 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.11 -1.81 4.82 30.63 0.15 -1.66 16 5 C 0.10 2.16 3.60 30.53 0.11 2.27 16 6 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 7 O -0.57 -13.17 13.32 -148.98 -1.98 -15.16 16 8 C 0.02 0.38 5.88 86.22 0.51 0.89 16 9 N -0.57 -13.39 2.98 -821.42 -2.45 -15.84 16 10 C 0.52 14.55 7.74 87.24 0.68 15.23 16 11 O -0.53 -15.70 15.95 -3.29 -0.05 -15.75 16 12 C 0.50 16.28 7.62 87.24 0.66 16.94 16 13 O -0.51 -19.00 10.54 -3.33 -0.04 -19.04 16 14 N -0.62 -20.01 5.31 -304.97 -1.62 -21.63 16 15 C 0.16 6.11 6.28 38.16 0.24 6.35 16 16 C -0.23 -8.21 9.97 22.59 0.23 -7.99 16 17 C -0.06 -2.38 10.02 22.20 0.22 -2.16 16 18 C -0.26 -11.66 6.84 22.76 0.16 -11.50 16 19 C 0.08 4.18 5.21 -21.31 -0.11 4.07 16 20 C -0.48 -27.16 9.63 23.46 0.23 -26.93 16 21 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 22 C 0.04 2.24 5.49 85.25 0.47 2.71 16 23 N -0.86 -47.71 13.93 21.82 0.30 -47.40 16 24 Si 0.97 42.89 24.33 68.60 1.67 44.56 16 25 H -0.25 -10.33 6.76 99.48 0.67 -9.66 16 26 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.25 -11.00 6.37 99.48 0.63 -10.36 16 28 C -0.21 -9.98 8.43 22.86 0.19 -9.79 16 29 C 0.11 1.84 5.70 86.36 0.49 2.33 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.39 7.41 9.08 -74.06 -0.67 6.74 16 36 H 0.14 4.19 3.75 -81.22 -0.30 3.89 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.43 11.19 8.33 -92.71 -0.77 10.42 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 40 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.10 4.48 4.01 -2.91 -0.01 4.47 16 42 H 0.29 14.67 8.30 -92.72 -0.77 13.90 16 43 H 0.10 5.13 6.25 -2.91 -0.02 5.12 16 44 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.10 1.75 7.05 -2.39 -0.02 1.73 16 Total: -1.00 -65.83 360.11 -0.12 -65.95 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.80 Total: 35.67 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.85 Total: -11.36 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.76 Total: -84.87 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -2.07 Total: -49.94 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.56 kcal Total: -65.83 -0.12 -65.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411844681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.493 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds