Wall clock time and date at job start Tue Mar 31 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47079 * 2 1 4 4 C 1.50698 * 109.47257 * 239.99908 * 2 1 3 5 5 H 1.08003 * 120.00182 * 239.99959 * 4 2 1 6 6 C 1.37883 * 119.99715 * 59.99483 * 4 2 1 7 7 N 1.31509 * 119.99983 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99576 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46894 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47369 * 299.99959 * 8 6 4 11 11 H 1.48500 * 109.47087 * 60.00634 * 8 6 4 12 12 N 1.46497 * 109.47107 * 119.99744 * 2 1 3 13 13 C 1.34769 * 120.00382 * 274.99814 * 12 2 1 14 14 O 1.21370 * 120.00306 * 0.02562 * 13 12 2 15 15 C 1.49336 * 120.00620 * 180.02562 * 13 12 2 16 16 O 1.21398 * 119.99572 * 0.02562 * 15 13 12 17 17 N 1.34769 * 120.00620 * 180.02562 * 15 13 12 18 18 C 1.39865 * 120.00163 * 175.36099 * 17 15 13 19 19 C 1.38944 * 120.19224 * 214.78899 * 18 17 15 20 20 C 1.37845 * 120.26621 * 179.60024 * 19 18 17 21 21 C 1.39324 * 120.33851 * 0.51514 * 20 19 18 22 22 C 1.38917 * 119.00167 * 0.06787 * 21 20 19 23 23 C 1.37662 * 120.85829 * 359.50308 * 22 21 20 24 24 C 1.51662 * 107.04024 * 179.05450 * 22 21 20 25 25 C 1.54697 * 101.94063 * 344.64619 * 24 22 21 26 26 C 1.53002 * 110.75245 * 266.98957 * 25 24 22 27 27 C 1.53000 * 110.90759 * 143.71193 * 25 24 22 28 28 O 1.36223 * 129.79586 * 180.31470 * 21 20 19 29 29 H 1.08999 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47229 * 300.00079 * 1 2 3 31 31 H 1.08999 * 109.47557 * 59.99974 * 1 2 3 32 32 H 0.97006 * 119.99787 * 179.97438 * 7 6 4 33 33 H 0.97008 * 119.99668 * 95.00280 * 12 2 1 34 34 H 0.97003 * 119.99710 * 355.36692 * 17 15 13 35 35 H 1.07997 * 119.86948 * 359.83190 * 19 18 17 36 36 H 1.07994 * 119.83331 * 180.26161 * 20 19 18 37 37 H 1.08003 * 120.03807 * 180.31876 * 23 22 21 38 38 H 1.08996 * 110.93814 * 102.81117 * 24 22 21 39 39 H 1.09004 * 110.93568 * 226.48855 * 24 22 21 40 40 H 1.08995 * 109.47291 * 174.81950 * 26 25 24 41 41 H 1.08999 * 109.47108 * 294.82622 * 26 25 24 42 42 H 1.08998 * 109.46898 * 54.81932 * 26 25 24 43 43 H 1.09000 * 109.46930 * 305.08997 * 27 25 24 44 44 H 1.08998 * 109.47310 * 65.08678 * 27 25 24 45 45 H 1.08993 * 109.47289 * 185.09025 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8268 -0.4200 -5.2205 10 1 3.8062 -1.1209 -4.0082 11 1 1.8257 -2.5203 -4.0077 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8581 1.1593 2.4118 15 6 2.6454 -0.7220 3.5763 16 8 2.9350 -1.8996 3.5216 17 7 2.7737 -0.0498 4.7374 18 6 3.1471 -0.7294 5.9014 19 6 2.6304 -0.3435 7.1321 20 6 2.9910 -1.0175 8.2792 21 6 3.8847 -2.0845 8.2170 22 6 4.4057 -2.4557 6.9839 23 6 4.0416 -1.7911 5.8346 24 6 5.3526 -3.6141 7.2319 25 6 5.5617 -3.5344 8.7626 26 6 6.7969 -2.6960 9.0981 27 6 5.6770 -4.9333 9.3716 28 8 4.3639 -2.8797 9.2138 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7093 1.1617 -3.4844 33 1 2.2490 -1.6318 1.1526 34 1 2.6069 0.9054 4.7657 35 1 1.9406 0.4854 7.1897 36 1 2.5819 -0.7143 9.2315 37 1 4.4509 -2.0942 4.8821 38 1 4.8918 -4.5610 6.9506 39 1 6.2939 -3.4681 6.7021 40 1 6.8725 -2.5767 10.1789 41 1 7.6893 -3.1983 8.7247 42 1 6.7088 -1.7158 8.6296 43 1 4.8031 -5.5230 9.0950 44 1 6.5773 -5.4198 8.9963 45 1 5.7328 -4.8535 10.4571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438868330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:42 Heat of formation + Delta-G solvation = -77.038650 kcal Electronic energy + Delta-G solvation = -27697.012570 eV Core-core repulsion = 23679.955579 eV Total energy + Delta-G solvation = -4017.056991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60808 -40.51736 -38.61458 -37.42309 -35.27920 -34.45384 -33.97103 -32.44009 -31.68826 -29.54541 -29.02435 -27.86543 -26.90363 -25.36914 -24.76139 -22.63861 -21.84170 -20.96987 -20.76761 -19.64818 -18.63961 -17.58468 -17.20663 -16.54743 -16.08063 -15.90399 -15.77548 -15.26584 -15.10773 -14.66319 -14.33822 -14.14076 -14.06399 -13.53162 -13.51254 -13.24041 -13.17913 -12.88709 -12.81644 -12.51057 -12.46731 -12.38152 -12.12047 -11.82660 -11.55229 -11.31013 -11.22408 -11.16252 -11.01902 -10.93944 -10.80385 -10.39285 -10.29323 -9.92145 -9.19626 -9.14142 -8.98578 -8.64506 -8.16571 -7.85972 -6.19305 -4.29091 0.98234 1.17054 1.85207 2.64661 2.95145 3.23914 3.28770 3.30895 3.46461 3.70575 3.99889 4.13093 4.23562 4.33335 4.42905 4.64707 4.72282 4.88694 5.05347 5.06324 5.12721 5.13779 5.19566 5.26200 5.29636 5.39787 5.49739 5.52364 5.67110 5.76838 5.79229 5.83931 6.13321 6.19297 6.26483 6.55447 6.69716 6.82370 6.99421 7.01831 7.08750 7.19494 7.38401 7.59453 7.75439 7.89721 8.02824 8.40795 8.58133 8.82258 9.37890 10.86664 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.002209 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.789894 B =12670.255651 C =13553.990461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.535 6.535 15 C 0.508 3.492 16 O -0.507 6.507 17 N -0.648 5.648 18 C 0.120 3.880 19 C -0.107 4.107 20 C -0.120 4.120 21 C 0.091 3.909 22 C -0.155 4.155 23 C -0.071 4.071 24 C -0.100 4.100 25 C 0.101 3.899 26 C -0.163 4.163 27 C -0.141 4.141 28 O -0.298 6.298 29 H 0.030 0.970 30 H 0.016 0.984 31 H 0.095 0.905 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.423 0.577 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -6.686 23.206 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.316 5.316 13 C 0.273 3.727 14 O -0.414 6.414 15 C 0.291 3.709 16 O -0.381 6.381 17 N -0.295 5.295 18 C 0.025 3.975 19 C -0.127 4.127 20 C -0.139 4.139 21 C 0.045 3.955 22 C -0.156 4.156 23 C -0.091 4.091 24 C -0.137 4.137 25 C 0.063 3.937 26 C -0.220 4.220 27 C -0.198 4.198 28 O -0.213 6.213 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.261 0.739 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.459 -6.600 23.155 25.520 hybrid contribution 0.302 -0.415 -0.970 1.097 sum 8.761 -7.015 22.185 24.863 Atomic orbital electron populations 1.22102 0.97807 0.99583 1.01233 1.18982 0.91470 0.94133 0.79308 0.92771 1.21148 1.32900 1.13513 0.90021 0.91799 1.24879 0.94679 0.94936 0.99095 1.69880 1.35605 1.22310 1.24208 0.86445 0.79209 0.79620 0.81490 1.21074 1.20092 1.20039 1.46507 1.61264 1.14544 1.09302 1.19647 0.81239 0.87279 0.84489 1.90734 1.50819 1.15217 1.84635 1.20971 0.78032 0.87043 0.84895 1.90722 1.47071 1.15721 1.84612 1.43135 1.66893 1.13051 1.06400 1.17520 0.97376 0.96672 0.85889 1.20645 1.00205 1.01428 0.90407 1.19969 1.00544 0.94435 0.98988 1.19513 0.96870 0.92163 0.86965 1.20570 1.02695 0.99195 0.93185 1.20424 0.95354 0.94888 0.98404 1.21884 0.99421 0.97375 0.95023 1.22732 0.84586 0.93448 0.92897 1.22195 0.96399 1.00554 1.02836 1.21835 1.03121 0.93068 1.01806 1.86876 1.39873 1.56786 1.37726 0.95090 0.96453 0.88696 0.92370 0.76318 0.73857 0.84484 0.85033 0.83871 0.88881 0.88946 0.91352 0.90678 0.91737 0.91359 0.90296 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.52 2.56 -69.09 -0.18 6.35 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.67 -14.16 5.06 -55.40 -0.28 -14.44 16 13 C 0.50 9.79 7.85 -11.64 -0.09 9.70 16 14 O -0.54 -11.64 16.14 5.48 0.09 -11.55 16 15 C 0.51 8.55 7.73 -11.64 -0.09 8.46 16 16 O -0.51 -9.13 13.92 5.46 0.08 -9.05 16 17 N -0.65 -8.90 5.33 -10.25 -0.05 -8.96 16 18 C 0.12 1.55 6.31 -83.65 -0.53 1.02 16 19 C -0.11 -1.14 9.94 -39.46 -0.39 -1.54 16 20 C -0.12 -1.28 10.06 -39.32 -0.40 -1.67 16 21 C 0.09 1.07 6.94 -38.93 -0.27 0.80 16 22 C -0.16 -1.86 6.26 -104.11 -0.65 -2.51 16 23 C -0.07 -0.95 8.69 -39.51 -0.34 -1.29 16 24 C -0.10 -0.92 6.18 -26.52 -0.16 -1.09 16 25 C 0.10 0.85 1.26 -89.73 -0.11 0.74 16 26 C -0.16 -1.14 8.85 37.16 0.33 -0.81 16 27 C -0.14 -0.88 8.96 37.16 0.33 -0.55 16 28 O -0.30 -3.35 10.53 -20.45 -0.22 -3.57 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.40 7.95 8.01 -40.82 -0.33 7.63 16 34 H 0.42 5.10 8.30 -40.82 -0.34 4.77 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.14 2.09 6.24 -52.48 -0.33 1.76 16 38 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 39 H 0.09 0.73 7.92 -51.93 -0.41 0.31 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -30.26 377.32 -7.99 -38.25 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.29 Total: 10.18 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.61 Total: 1.68 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.29 Total: -47.02 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.26 -7.99 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438868330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.788 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds