Wall clock time and date at job start Tue Mar 31 2020 18:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47079 * 2 1 4 4 C 1.50698 * 109.47257 * 239.99908 * 2 1 3 5 5 H 1.08003 * 120.00182 * 239.99959 * 4 2 1 6 6 C 1.37883 * 119.99715 * 59.99483 * 4 2 1 7 7 N 1.31509 * 119.99983 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99576 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46894 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47369 * 299.99959 * 8 6 4 11 11 H 1.48500 * 109.47087 * 60.00634 * 8 6 4 12 12 N 1.46497 * 109.47107 * 119.99744 * 2 1 3 13 13 C 1.34769 * 120.00382 * 274.99814 * 12 2 1 14 14 O 1.21370 * 120.00306 * 0.02562 * 13 12 2 15 15 C 1.49336 * 120.00620 * 180.02562 * 13 12 2 16 16 O 1.21398 * 119.99572 * 0.02562 * 15 13 12 17 17 N 1.34769 * 120.00620 * 180.02562 * 15 13 12 18 18 C 1.39865 * 120.00163 * 175.36099 * 17 15 13 19 19 C 1.38944 * 120.19224 * 214.78899 * 18 17 15 20 20 C 1.37845 * 120.26621 * 179.60024 * 19 18 17 21 21 C 1.39324 * 120.33851 * 0.51514 * 20 19 18 22 22 C 1.38917 * 119.00167 * 0.06787 * 21 20 19 23 23 C 1.37662 * 120.85829 * 359.50308 * 22 21 20 24 24 C 1.51662 * 107.04024 * 179.05450 * 22 21 20 25 25 C 1.54697 * 101.94063 * 344.64619 * 24 22 21 26 26 C 1.53002 * 110.75245 * 266.98957 * 25 24 22 27 27 C 1.53000 * 110.90759 * 143.71193 * 25 24 22 28 28 O 1.36223 * 129.79586 * 180.31470 * 21 20 19 29 29 H 1.08999 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47229 * 300.00079 * 1 2 3 31 31 H 1.08999 * 109.47557 * 59.99974 * 1 2 3 32 32 H 0.97006 * 119.99787 * 179.97438 * 7 6 4 33 33 H 0.97008 * 119.99668 * 95.00280 * 12 2 1 34 34 H 0.97003 * 119.99710 * 355.36692 * 17 15 13 35 35 H 1.07997 * 119.86948 * 359.83190 * 19 18 17 36 36 H 1.07994 * 119.83331 * 180.26161 * 20 19 18 37 37 H 1.08003 * 120.03807 * 180.31876 * 23 22 21 38 38 H 1.08996 * 110.93814 * 102.81117 * 24 22 21 39 39 H 1.09004 * 110.93568 * 226.48855 * 24 22 21 40 40 H 1.08995 * 109.47291 * 174.81950 * 26 25 24 41 41 H 1.08999 * 109.47108 * 294.82622 * 26 25 24 42 42 H 1.08998 * 109.46898 * 54.81932 * 26 25 24 43 43 H 1.09000 * 109.46930 * 305.08997 * 27 25 24 44 44 H 1.08998 * 109.47310 * 65.08678 * 27 25 24 45 45 H 1.08993 * 109.47289 * 185.09025 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8268 -0.4200 -5.2205 10 1 3.8062 -1.1209 -4.0082 11 1 1.8257 -2.5203 -4.0077 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8581 1.1593 2.4118 15 6 2.6454 -0.7220 3.5763 16 8 2.9350 -1.8996 3.5216 17 7 2.7737 -0.0498 4.7374 18 6 3.1471 -0.7294 5.9014 19 6 2.6304 -0.3435 7.1321 20 6 2.9910 -1.0175 8.2792 21 6 3.8847 -2.0845 8.2170 22 6 4.4057 -2.4557 6.9839 23 6 4.0416 -1.7911 5.8346 24 6 5.3526 -3.6141 7.2319 25 6 5.5617 -3.5344 8.7626 26 6 6.7969 -2.6960 9.0981 27 6 5.6770 -4.9333 9.3716 28 8 4.3639 -2.8797 9.2138 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7093 1.1617 -3.4844 33 1 2.2490 -1.6318 1.1526 34 1 2.6069 0.9054 4.7657 35 1 1.9406 0.4854 7.1897 36 1 2.5819 -0.7143 9.2315 37 1 4.4509 -2.0942 4.8821 38 1 4.8918 -4.5610 6.9506 39 1 6.2939 -3.4681 6.7021 40 1 6.8725 -2.5767 10.1789 41 1 7.6893 -3.1983 8.7247 42 1 6.7088 -1.7158 8.6296 43 1 4.8031 -5.5230 9.0950 44 1 6.5773 -5.4198 8.9963 45 1 5.7328 -4.8535 10.4571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438868330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:41 Heat of formation + Delta-G solvation = -96.451231 kcal Electronic energy + Delta-G solvation = -27697.854362 eV Core-core repulsion = 23679.955579 eV Total energy + Delta-G solvation = -4017.898784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.49204 -41.80707 -40.05195 -38.55623 -37.01679 -35.65575 -34.75396 -34.33129 -32.49086 -31.16426 -30.30178 -28.38157 -27.71228 -27.38154 -26.15848 -23.77786 -22.88204 -22.26932 -21.70285 -21.24581 -20.09187 -18.61901 -18.33493 -18.01545 -17.42669 -17.20706 -16.94012 -16.68746 -16.45131 -15.95413 -15.48518 -15.23977 -15.11674 -14.79932 -14.62123 -14.44380 -14.32347 -13.93918 -13.77643 -13.67795 -13.51080 -13.19360 -13.08684 -12.91995 -12.90746 -12.83383 -12.78759 -12.67588 -12.30559 -12.20954 -12.14585 -11.95858 -11.76345 -11.18072 -10.92600 -10.68904 -10.59953 -10.00136 -9.92202 -8.81615 -8.20675 -6.38053 -0.08592 0.25690 0.53871 1.29632 1.46309 1.47203 1.55459 2.09279 2.20414 2.38630 2.65326 2.71685 3.10038 3.35625 3.46434 3.53881 3.82899 3.87683 4.02331 4.10240 4.23319 4.47014 4.54551 4.63131 4.64828 4.68911 4.72590 4.83320 4.87689 4.88297 4.97487 5.00490 5.00715 5.15811 5.20324 5.25048 5.27535 5.29266 5.36610 5.42539 5.57577 5.61648 5.75590 5.99338 6.02615 6.18435 6.52439 6.63693 6.76810 7.05102 7.34012 8.85221 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.002209 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.789894 B =12670.255651 C =13553.990461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.972 3.028 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.267 1.267 12 N -0.670 5.670 13 C 0.497 3.503 14 O -0.556 6.556 15 C 0.517 3.483 16 O -0.521 6.521 17 N -0.629 5.629 18 C 0.096 3.904 19 C -0.095 4.095 20 C -0.121 4.121 21 C 0.085 3.915 22 C -0.167 4.167 23 C -0.086 4.086 24 C -0.102 4.102 25 C 0.096 3.904 26 C -0.160 4.160 27 C -0.139 4.139 28 O -0.310 6.310 29 H 0.039 0.961 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.431 0.569 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.522 -7.884 24.749 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.591 4.591 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.191 1.191 12 N -0.320 5.320 13 C 0.276 3.724 14 O -0.436 6.436 15 C 0.299 3.701 16 O -0.396 6.396 17 N -0.276 5.276 18 C 0.002 3.998 19 C -0.115 4.115 20 C -0.140 4.140 21 C 0.039 3.961 22 C -0.168 4.168 23 C -0.106 4.106 24 C -0.139 4.139 25 C 0.059 3.941 26 C -0.217 4.217 27 C -0.196 4.196 28 O -0.225 6.225 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.271 0.729 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.333 -7.801 24.752 27.580 hybrid contribution 0.071 -0.021 -1.299 1.301 sum 9.404 -7.823 23.453 26.451 Atomic orbital electron populations 1.21932 0.97446 0.99787 1.00365 1.18624 0.91709 0.92412 0.80659 0.96619 1.21453 1.33150 1.13819 0.90728 0.91174 1.25731 0.94744 0.95566 1.02074 1.70009 1.36494 1.23542 1.24911 0.85399 0.78653 0.78673 0.77643 1.20837 1.19657 1.19138 1.46266 1.61841 1.14829 1.09023 1.20097 0.80262 0.86988 0.85009 1.90715 1.51474 1.16259 1.85164 1.20224 0.78524 0.86632 0.84740 1.90728 1.48105 1.16061 1.84735 1.42942 1.65597 1.13322 1.05775 1.17703 0.98639 0.97363 0.86059 1.20907 0.99667 1.01622 0.89263 1.20314 0.99899 0.93845 0.99958 1.19798 0.96833 0.92374 0.87063 1.20816 1.03237 0.99922 0.92859 1.20381 0.96232 0.95718 0.98266 1.22001 0.99438 0.96466 0.95958 1.23023 0.84132 0.94644 0.92305 1.22199 0.96531 0.99772 1.03199 1.21875 1.03951 0.91637 1.02122 1.86867 1.41017 1.56772 1.37848 0.94205 0.96044 0.90744 0.92286 0.75423 0.72896 0.81794 0.82598 0.85587 0.88629 0.87757 0.90738 0.88628 0.93176 0.91910 0.88132 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.67 2.56 44.24 0.11 13.78 16 3 H 0.02 0.93 7.58 -2.38 -0.02 0.91 16 4 C -0.55 -29.17 8.73 25.60 0.22 -28.95 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -50.83 11.32 21.45 0.24 -50.59 16 8 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 12 N -0.67 -28.85 5.06 -447.56 -2.27 -31.12 16 13 C 0.50 19.88 7.85 87.23 0.68 20.56 16 14 O -0.56 -24.56 16.14 -3.31 -0.05 -24.62 16 15 C 0.52 17.39 7.73 87.23 0.67 18.07 16 16 O -0.52 -18.81 13.92 -3.39 -0.05 -18.85 16 17 N -0.63 -16.94 5.33 -304.67 -1.62 -18.56 16 18 C 0.10 2.40 6.31 38.21 0.24 2.64 16 19 C -0.09 -1.85 9.94 22.35 0.22 -1.62 16 20 C -0.12 -2.32 10.06 22.44 0.23 -2.10 16 21 C 0.09 1.89 6.94 22.69 0.16 2.05 16 22 C -0.17 -3.89 6.26 -19.53 -0.12 -4.01 16 23 C -0.09 -2.30 8.69 22.31 0.19 -2.11 16 24 C -0.10 -1.76 6.18 30.73 0.19 -1.57 16 25 C 0.10 1.45 1.26 -10.21 -0.01 1.44 16 26 C -0.16 -1.93 8.85 71.98 0.64 -1.29 16 27 C -0.14 -1.42 8.96 71.98 0.65 -0.78 16 28 O -0.31 -6.50 10.53 -96.10 -1.01 -7.51 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 32 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 33 H 0.41 16.33 8.01 -92.70 -0.74 15.59 16 34 H 0.43 10.06 8.30 -92.71 -0.77 9.29 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.13 3.77 6.24 -2.91 -0.02 3.75 16 38 H 0.10 1.58 7.91 -2.39 -0.02 1.56 16 39 H 0.10 1.51 7.92 -2.39 -0.02 1.49 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 43 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 44 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -65.45 377.32 1.98 -63.47 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.47 Total: 32.57 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.19 Total: 11.54 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -3.65 Total: -100.27 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -1.11 Total: -50.98 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -65.45 1.98 -63.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438868330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.985 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds